Wall clock time and date at job start Tue Mar 31 2020 11:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47571 * 2 1 4 4 C 1.52998 * 109.46861 * 120.00398 * 2 1 3 5 5 C 1.53003 * 109.46965 * 299.99175 * 4 2 1 6 6 C 1.50700 * 109.47328 * 180.02562 * 5 4 2 7 7 O 1.20835 * 119.99600 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00368 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00205 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55544 * 294.88682 * 10 9 8 12 12 H 1.07995 * 119.99892 * 95.15843 * 11 10 9 13 13 C 1.37875 * 119.99625 * 274.89404 * 11 10 9 14 14 N 1.31516 * 120.00645 * 6.38641 * 13 11 10 15 15 Si 1.86804 * 119.99966 * 186.39037 * 13 11 10 16 16 H 1.48497 * 109.46911 * 59.99497 * 15 13 11 17 17 H 1.48501 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46934 * 299.99733 * 15 13 11 19 19 C 1.52999 * 117.50107 * 80.55676 * 10 9 8 20 20 C 1.53002 * 117.49851 * 149.21518 * 10 9 8 21 21 C 1.50701 * 109.47030 * 239.99805 * 2 1 3 22 22 C 1.38237 * 120.00153 * 239.73157 * 21 2 1 23 23 C 1.38232 * 119.99834 * 179.76504 * 22 21 2 24 24 C 1.38237 * 120.00127 * 0.51041 * 23 22 21 25 25 C 1.38232 * 119.99686 * 359.73821 * 24 23 22 26 26 C 1.38226 * 120.00533 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47131 * 300.00176 * 1 2 3 28 28 H 1.09006 * 109.47215 * 59.99807 * 1 2 3 29 29 H 1.08996 * 109.47784 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47359 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47009 * 300.00319 * 3 2 1 32 32 H 1.09002 * 109.47037 * 59.99766 * 3 2 1 33 33 H 1.09006 * 109.47042 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47684 * 59.99535 * 4 2 1 35 35 H 1.09004 * 109.46971 * 60.00633 * 5 4 2 36 36 H 1.08998 * 109.47214 * 300.00648 * 5 4 2 37 37 H 1.09001 * 109.46840 * 59.99792 * 9 8 6 38 38 H 1.09000 * 109.47129 * 299.99899 * 9 8 6 39 39 H 0.96998 * 120.00543 * 180.02562 * 14 13 11 40 40 H 1.08998 * 117.50651 * 215.00344 * 19 10 9 41 41 H 1.09007 * 117.49575 * 0.02562 * 19 10 9 42 42 H 1.09004 * 117.50100 * 359.97438 * 20 10 9 43 43 H 1.09000 * 117.49932 * 144.97481 * 20 10 9 44 44 H 1.07993 * 119.99836 * 359.97438 * 22 21 2 45 45 H 1.07997 * 119.99793 * 180.22782 * 23 22 21 46 46 H 1.08005 * 120.00215 * 179.72674 * 24 23 22 47 47 H 1.08008 * 119.99529 * 179.97438 * 25 24 23 48 48 H 1.07998 * 120.00534 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 0.0000 2.4985 6 6 2.0327 -0.7101 3.7289 7 8 2.7280 -1.6921 3.6180 8 8 1.7082 -0.2517 4.9481 9 6 2.2283 -0.9852 6.0881 10 6 1.7568 -0.3183 7.3818 11 6 2.2834 1.0725 7.6255 12 1 1.6962 1.9309 7.3342 13 6 3.5122 1.2491 8.2253 14 7 4.2798 0.2097 8.4705 15 14 4.0869 2.9648 8.6898 16 1 3.1282 3.5641 9.6525 17 1 5.4311 2.8840 9.3157 18 1 4.1579 3.8100 7.4707 19 6 0.3377 -0.6304 7.8610 20 6 1.5422 -1.2162 8.6019 21 6 2.0323 -0.7105 -1.2305 22 6 2.8316 -1.8312 -1.1036 23 6 3.2883 -2.4856 -2.2323 24 6 2.9545 -2.0133 -3.4878 25 6 2.1594 -0.8896 -3.6146 26 6 1.6986 -0.2380 -2.4860 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7210 1.2495 34 1 1.6765 -1.7490 1.2492 35 1 0.4400 0.0000 2.4985 36 1 1.8934 1.0276 2.4984 37 1 3.3178 -0.9835 6.0550 38 1 1.8655 -2.0126 6.0554 39 1 5.1442 0.3340 8.8928 40 1 -0.2151 0.1702 8.3524 41 1 -0.2599 -1.3112 7.2547 42 1 1.7365 -2.2822 8.4828 43 1 1.7823 -0.8011 9.5808 44 1 3.0964 -2.1973 -0.1228 45 1 3.9097 -3.3633 -2.1332 46 1 3.3149 -2.5221 -4.3697 47 1 1.8989 -0.5204 -4.5956 48 1 1.0778 0.6402 -2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754535462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:48 Heat of formation + Delta-G solvation = -58.013178 kcal Electronic energy + Delta-G solvation = -26014.786481 eV Core-core repulsion = 22420.777031 eV Total energy + Delta-G solvation = -3594.009449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29718 -39.55270 -37.17809 -36.54968 -35.17292 -31.97063 -31.76654 -31.04351 -29.50927 -27.44206 -27.07354 -25.57303 -24.89958 -22.85380 -22.20392 -21.19138 -20.19291 -19.25863 -18.86890 -17.46216 -16.81640 -16.41272 -15.98771 -15.42840 -15.19576 -14.93289 -14.72327 -14.49365 -14.09972 -13.81634 -13.75181 -13.60080 -13.41664 -12.95552 -12.55196 -12.44705 -12.14505 -12.04451 -11.84126 -11.72178 -11.51066 -11.48863 -11.29998 -10.97797 -10.86368 -10.75643 -10.68115 -10.55603 -10.52531 -10.29365 -9.96933 -9.82269 -9.53426 -9.05651 -8.83690 -8.83261 -8.47412 -8.21171 -6.07444 -4.12843 1.21700 1.26099 2.81144 3.29405 3.34556 3.36706 3.37940 3.64009 4.37870 4.38535 4.54137 4.82236 4.83924 4.90961 4.93733 5.04939 5.18334 5.21271 5.22959 5.24235 5.33936 5.42107 5.50392 5.51601 5.63563 5.73491 5.74624 5.80857 5.89758 5.91079 5.94930 5.99317 6.03421 6.19608 6.22633 6.25043 6.33536 6.35366 6.39114 6.52743 6.53826 6.66841 6.73256 6.86562 7.02366 7.29321 7.36418 7.48174 7.85586 8.36234 8.48715 8.88526 9.52930 11.01983 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.002578 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.944987 B =10858.811670 C =11178.759201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.025 4.025 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.119 4.119 6 C 0.451 3.549 7 O -0.526 6.526 8 O -0.339 6.339 9 C 0.116 3.884 10 C 0.038 3.962 11 C -0.490 4.490 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.882 5.882 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.205 4.205 20 C -0.146 4.146 21 C -0.065 4.065 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.116 4.116 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 -1.441 -21.198 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 C -0.201 4.201 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.295 3.705 7 O -0.417 6.417 8 O -0.254 6.254 9 C 0.043 3.957 10 C 0.038 3.962 11 C -0.528 4.528 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.518 5.518 15 Si 0.720 3.280 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.242 4.242 20 C -0.184 4.184 21 C -0.065 4.065 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.149 0.851 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.359 -1.783 -21.084 21.827 hybrid contribution 0.594 0.653 0.327 0.941 sum -4.766 -1.130 -20.757 21.327 Atomic orbital electron populations 1.21980 0.93507 1.02309 1.02232 1.19519 0.95859 0.95286 0.91868 1.21990 1.01576 0.94311 1.02251 1.21559 1.01765 0.99327 0.90965 1.21499 1.03204 1.01178 0.89720 1.23612 0.77889 0.82914 0.86088 1.90605 1.36431 1.26725 1.87913 1.86515 1.68618 1.55756 1.14527 1.22866 0.99266 0.91434 0.82159 1.18770 0.92827 0.95962 0.88679 1.20348 1.02839 0.89824 1.39785 0.91919 1.25017 0.96332 0.96838 0.95274 1.69987 1.10416 1.29489 1.41937 0.86650 0.77766 0.84652 0.78912 1.20133 1.21279 1.20106 1.23002 0.92323 1.03073 1.05844 1.22547 1.01158 0.96687 0.98004 1.19830 0.97051 0.95412 0.94205 1.21346 0.97565 0.95493 0.99350 1.21184 0.99952 0.99898 0.92611 1.21129 0.99107 0.97086 0.97391 1.21100 0.98406 0.96144 0.98366 1.20967 1.00455 1.00037 0.91947 0.91544 0.92449 0.92345 0.92249 0.92458 0.91476 0.90564 0.90685 0.87894 0.87649 0.90652 0.94443 0.92838 0.90077 0.91570 0.91660 0.89445 0.85149 0.86186 0.86442 0.86370 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.93 37.16 0.29 -0.93 16 2 C -0.03 -0.24 0.63 -155.67 -0.10 -0.34 16 3 C -0.14 -1.30 7.93 37.15 0.29 -1.01 16 4 C -0.10 -1.16 2.22 -26.73 -0.06 -1.22 16 5 C -0.12 -1.55 5.11 -27.88 -0.14 -1.69 16 6 C 0.45 8.47 7.96 36.01 0.29 8.76 16 7 O -0.53 -11.11 15.73 -18.76 -0.30 -11.40 16 8 O -0.34 -7.41 10.16 -39.25 -0.40 -7.81 16 9 C 0.12 2.78 5.29 37.15 0.20 2.97 16 10 C 0.04 0.95 1.61 -155.66 -0.25 0.70 16 11 C -0.49 -13.37 8.77 -34.44 -0.30 -13.67 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.29 16 13 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 14 N -0.88 -24.94 12.93 55.43 0.72 -24.23 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.21 -4.47 9.96 -26.70 -0.27 -4.74 16 20 C -0.15 -3.41 9.43 -26.69 -0.25 -3.66 16 21 C -0.06 -0.66 4.76 -104.62 -0.50 -1.16 16 22 C -0.12 -1.29 8.98 -39.58 -0.36 -1.65 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.15 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 26 C -0.12 -1.07 8.71 -39.58 -0.34 -1.41 16 27 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 28 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 32 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.08 0.98 7.46 -51.93 -0.39 0.60 16 34 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 35 H 0.10 1.14 6.43 -51.93 -0.33 0.81 16 36 H 0.11 1.27 6.43 -51.93 -0.33 0.93 16 37 H 0.08 2.00 8.13 -51.93 -0.42 1.58 16 38 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 42 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 44 H 0.13 1.44 5.90 -52.49 -0.31 1.13 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.91 7.10 -52.49 -0.37 0.54 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -30.47 388.30 -9.68 -40.15 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.75 Total: 3.26 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.78 Total: -21.83 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.72 Total: -24.23 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.69 Total: -19.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.47 -9.68 -40.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754535462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.861 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds