Wall clock time and date at job start Tue Mar 31 2020 11:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47422 * 2 1 4 4 C 1.52998 * 109.47212 * 299.99967 * 3 2 1 5 5 C 1.53000 * 109.46950 * 300.00088 * 4 3 2 6 6 C 1.53000 * 109.47317 * 180.02562 * 5 4 3 7 7 O 1.45197 * 109.47332 * 174.99568 * 6 5 4 8 8 C 1.34234 * 116.99835 * 179.97438 * 7 6 5 9 9 O 1.20824 * 119.99711 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99720 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.46813 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.13180 * 265.30632 * 11 10 8 13 13 C 1.38613 * 120.24862 * 180.32332 * 12 11 10 14 14 C 1.38655 * 120.50174 * 359.67182 * 13 12 11 15 15 C 1.37598 * 120.24576 * 359.97438 * 14 13 12 16 16 C 1.40702 * 120.12495 * 85.00356 * 11 10 8 17 17 C 1.41393 * 120.24620 * 359.97406 * 16 11 10 18 18 H 1.07999 * 119.99787 * 29.07372 * 17 16 11 19 19 C 1.39938 * 120.00244 * 209.07592 * 17 16 11 20 20 N 1.30823 * 120.00241 * 197.10039 * 19 17 16 21 21 Si 1.86803 * 119.99882 * 17.09514 * 19 17 16 22 22 H 1.48495 * 109.47432 * 270.00073 * 21 19 17 23 23 H 1.48498 * 109.46929 * 30.00589 * 21 19 17 24 24 H 1.48504 * 109.46998 * 150.00206 * 21 19 17 25 25 C 1.52998 * 109.47579 * 59.99818 * 5 4 3 26 26 C 1.53000 * 109.47000 * 300.00444 * 25 5 4 27 27 H 1.09004 * 109.46992 * 59.99739 * 1 2 3 28 28 H 1.09000 * 109.47690 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47627 * 300.00350 * 1 2 3 30 30 H 1.09004 * 109.46992 * 120.00261 * 2 1 3 31 31 H 1.08998 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46800 * 59.99765 * 3 2 1 33 33 H 1.09003 * 109.47279 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47059 * 59.99665 * 4 3 2 35 35 H 1.09004 * 109.46895 * 299.99678 * 5 4 3 36 36 H 1.09002 * 109.46836 * 54.99373 * 6 5 4 37 37 H 1.09001 * 109.46681 * 295.00129 * 6 5 4 38 38 H 1.08999 * 109.47299 * 60.00549 * 10 8 7 39 39 H 1.08998 * 109.47401 * 300.00018 * 10 8 7 40 40 H 1.08005 * 119.87130 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.74473 * 179.69460 * 13 12 11 42 42 H 1.08002 * 119.87493 * 180.02562 * 14 13 12 43 43 H 1.08003 * 120.12022 * 180.02562 * 15 14 13 44 44 H 0.97004 * 119.99819 * 355.45620 * 20 19 17 45 45 H 1.08998 * 109.46739 * 59.99979 * 25 5 4 46 46 H 1.08996 * 109.47166 * 179.97438 * 25 5 4 47 47 H 1.09004 * 109.46820 * 299.99740 * 26 25 5 48 48 H 1.09003 * 109.47152 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0400 1.4424 -2.4984 6 6 1.5307 2.1640 -3.7477 7 8 2.1097 1.5519 -4.9302 8 6 1.7613 2.0712 -6.1179 9 8 0.9982 3.0066 -6.1677 10 6 2.3220 1.4876 -7.3892 11 6 1.7784 2.2459 -8.5726 12 6 0.6631 1.7857 -9.2350 13 6 0.1650 2.4776 -10.3279 14 6 0.7782 3.6428 -10.7623 15 6 1.8900 4.1253 -10.1107 16 6 2.4052 3.4306 -9.0006 17 6 3.5473 3.9168 -8.3236 18 1 4.2141 3.2281 -7.8262 19 6 3.8137 5.2904 -8.2979 20 7 5.0076 5.7193 -7.9785 21 14 2.4645 6.5114 -8.7200 22 1 2.4848 6.7869 -10.1790 23 1 1.1460 5.9425 -8.3418 24 1 2.6902 7.7758 -7.9744 25 6 1.5300 -0.0001 -2.4985 26 6 2.0399 -0.7213 -1.2492 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1300 1.4423 0.0005 32 1 1.6766 1.9563 0.8900 33 1 1.8931 3.1915 -1.2490 34 1 0.4400 2.1637 -1.2493 35 1 3.1301 1.4424 -2.4984 36 1 1.8194 3.2142 -3.7038 37 1 0.4443 2.0875 -3.7938 38 1 2.0339 0.4391 -7.4656 39 1 3.4091 1.5657 -7.3763 40 1 0.1772 0.8793 -8.9050 41 1 -0.7077 2.1065 -10.8448 42 1 0.3813 4.1741 -11.6147 43 1 2.3658 5.0334 -10.4506 44 1 5.6895 5.0900 -7.6957 45 1 0.4401 0.0000 -2.4985 46 1 1.8930 -0.5137 -3.3887 47 1 3.1300 -0.7213 -1.2492 48 1 1.6762 -1.7489 -1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754877513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:21 Heat of formation + Delta-G solvation = -108.898807 kcal Electronic energy + Delta-G solvation = -26609.506658 eV Core-core repulsion = 23013.290642 eV Total energy + Delta-G solvation = -3596.216016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.07816 -39.19626 -37.87049 -35.85090 -33.69367 -32.99368 -31.94724 -30.95116 -30.19168 -28.16785 -27.12393 -25.20564 -24.48894 -22.84313 -21.64683 -21.18115 -20.72684 -19.34298 -18.78520 -18.11505 -16.96475 -16.17414 -16.07132 -15.67142 -15.29890 -14.82149 -14.58654 -14.25491 -14.03523 -13.91605 -13.69599 -13.28704 -12.99943 -12.63347 -12.53946 -12.37041 -12.25610 -12.12032 -11.97502 -11.82290 -11.42154 -11.36242 -11.26125 -11.17294 -11.11774 -10.81226 -10.39411 -10.34738 -10.27438 -10.21895 -10.18288 -10.00992 -9.74468 -9.66855 -9.29555 -8.98898 -7.69233 -7.64783 -7.20892 -4.53709 2.47742 2.72793 2.98546 3.24452 3.28795 3.43914 3.64449 4.07562 4.44501 4.50436 4.56235 4.59812 4.90652 5.01218 5.04748 5.17275 5.24583 5.34780 5.36506 5.38910 5.46259 5.54159 5.60299 5.62968 5.70568 5.75200 5.79254 5.80704 5.86025 5.92295 5.97545 5.99823 6.04850 6.09899 6.16916 6.18183 6.21919 6.29666 6.37374 6.51109 6.71942 6.99511 7.03757 7.33698 7.49603 7.64189 7.68863 7.82170 7.97752 8.37594 8.51068 8.56774 8.77887 10.05183 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003276 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.726654 B = 8546.152029 C = 9409.287218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.116 4.116 5 C -0.084 4.084 6 C 0.070 3.930 7 O -0.366 6.366 8 C 0.462 3.538 9 O -0.490 6.490 10 C -0.041 4.041 11 C -0.185 4.185 12 C -0.063 4.063 13 C -0.246 4.246 14 C -0.073 4.073 15 C -0.244 4.244 16 C 0.116 3.884 17 C -0.515 4.515 18 H 0.077 0.923 19 C 0.047 3.953 20 N -0.819 5.819 21 Si 1.070 2.930 22 H -0.278 1.278 23 H -0.258 1.258 24 H -0.292 1.292 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.284 0.716 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -10.025 13.417 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.149 4.149 4 C -0.153 4.153 5 C -0.103 4.103 6 C -0.004 4.004 7 O -0.285 6.285 8 C 0.304 3.696 9 O -0.375 6.375 10 C -0.079 4.079 11 C -0.186 4.186 12 C -0.082 4.082 13 C -0.265 4.265 14 C -0.091 4.091 15 C -0.262 4.262 16 C 0.113 3.887 17 C -0.544 4.544 18 H 0.095 0.905 19 C -0.172 4.172 20 N -0.442 5.442 21 Si 0.896 3.104 22 H -0.205 1.205 23 H -0.183 1.183 24 H -0.219 1.219 25 C -0.152 4.152 26 C -0.151 4.151 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.670 -8.113 13.286 16.568 hybrid contribution 0.405 -1.497 0.270 1.574 sum -5.265 -9.610 13.556 17.431 Atomic orbital electron populations 1.21952 0.95422 1.01556 1.01980 1.21112 0.95927 0.96037 0.98079 1.21528 1.00688 0.95235 0.97455 1.21549 1.01259 0.99019 0.93477 1.21173 1.01543 0.95343 0.92214 1.22968 0.97791 0.97111 0.82519 1.86486 1.67627 1.59165 1.15206 1.24160 0.79099 0.81680 0.84687 1.90637 1.33204 1.26448 1.87239 1.19953 1.02211 0.98621 0.87073 1.19009 0.99716 1.01246 0.98634 1.20448 0.94729 0.97699 0.95278 1.20337 1.03796 0.99893 1.02503 1.20633 0.95209 0.95473 0.97803 1.21139 1.01564 1.03675 0.99860 1.17513 0.90834 0.90363 0.89943 1.20587 1.07642 0.94659 1.31503 0.90544 1.27179 0.99338 0.98817 0.91896 1.70561 1.02173 1.40929 1.30533 0.83651 0.75841 0.74290 0.76593 1.20493 1.18259 1.21935 1.21598 1.00764 0.94803 0.98069 1.21569 1.00635 0.98681 0.94264 0.91880 0.92947 0.92992 0.91526 0.91853 0.91924 0.91629 0.91367 0.90128 0.91501 0.91815 0.89347 0.87903 0.88996 0.88850 0.88743 0.87663 0.90450 0.91815 0.91114 0.91941 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.50 37.15 0.32 -0.86 16 2 C -0.09 -0.75 3.19 -90.63 -0.29 -1.03 16 3 C -0.11 -0.93 5.45 -26.73 -0.15 -1.08 16 4 C -0.12 -1.12 4.93 -26.73 -0.13 -1.25 16 5 C -0.08 -0.97 2.43 -90.62 -0.22 -1.19 16 6 C 0.07 1.05 4.84 37.16 0.18 1.23 16 7 O -0.37 -6.45 9.76 -39.27 -0.38 -6.84 16 8 C 0.46 9.56 7.95 36.01 0.29 9.85 16 9 O -0.49 -11.86 15.78 -18.75 -0.30 -12.16 16 10 C -0.04 -0.82 5.47 -29.03 -0.16 -0.98 16 11 C -0.18 -4.28 4.43 -103.91 -0.46 -4.74 16 12 C -0.06 -1.36 9.66 -39.66 -0.38 -1.74 16 13 C -0.25 -5.25 10.05 -39.29 -0.39 -5.64 16 14 C -0.07 -1.62 10.02 -39.66 -0.40 -2.02 16 15 C -0.24 -6.03 7.26 -38.87 -0.28 -6.31 16 16 C 0.12 2.99 5.13 -106.83 -0.55 2.44 16 17 C -0.52 -13.81 8.80 -37.75 -0.33 -14.14 16 18 H 0.08 2.06 6.60 -52.49 -0.35 1.71 16 19 C 0.05 1.26 5.42 -17.34 -0.09 1.17 16 20 N -0.82 -22.36 13.65 55.55 0.76 -21.60 16 21 Si 1.07 25.80 24.89 -169.99 -4.23 21.56 16 22 H -0.28 -6.27 6.45 56.52 0.36 -5.91 16 23 H -0.26 -6.47 7.01 56.52 0.40 -6.07 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.11 -1.20 4.83 -26.73 -0.13 -1.33 16 26 C -0.11 -1.00 5.45 -26.73 -0.15 -1.14 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 39 H 0.10 2.04 6.51 -51.93 -0.34 1.70 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.59 4.43 -52.48 -0.23 2.35 16 44 H 0.28 7.50 8.73 -40.82 -0.36 7.14 16 45 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 46 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -29.47 372.02 -9.65 -39.12 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.77 Total: 3.08 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -3.33 Total: -28.78 kcal Atomic # 7 Polarization: -22.36 SS G_CDS: 0.76 Total: -21.60 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.68 Total: -18.99 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.23 Total: 21.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.47 -9.65 -39.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754877513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.776 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds