Wall clock time and date at job start Tue Mar 31 2020 11:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 C 1.50691 * 109.47107 * 300.00102 * 3 2 1 5 5 O 1.20833 * 119.99943 * 239.99568 * 4 3 2 6 6 O 1.34227 * 120.00604 * 59.72702 * 4 3 2 7 7 C 1.45193 * 117.00578 * 180.27501 * 6 4 3 8 8 C 1.50699 * 109.47204 * 179.97438 * 7 6 4 9 9 C 1.38632 * 119.75167 * 269.72686 * 8 7 6 10 10 C 1.37613 * 120.24992 * 179.72411 * 9 8 7 11 11 C 1.40718 * 119.74754 * 0.56824 * 10 9 8 12 12 C 1.41389 * 120.24674 * 179.68403 * 11 10 9 13 13 H 1.07992 * 120.00173 * 24.41383 * 12 11 10 14 14 C 1.39950 * 119.99858 * 204.40777 * 12 11 10 15 15 N 1.30826 * 119.99820 * 17.86082 * 14 12 11 16 16 Si 1.86795 * 119.99963 * 197.85545 * 14 12 11 17 17 H 1.48494 * 109.47279 * 60.00383 * 16 14 12 18 18 H 1.48501 * 109.47201 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47103 * 300.00256 * 16 14 12 20 20 C 1.40715 * 119.50514 * 359.70687 * 11 10 9 21 21 C 1.37618 * 119.74825 * 359.97438 * 20 11 10 22 22 C 1.53004 * 109.46840 * 60.00010 * 3 2 1 23 23 C 1.53000 * 109.46815 * 179.97438 * 22 3 2 24 24 C 1.53000 * 109.47429 * 299.99864 * 23 22 3 25 25 C 1.53004 * 109.47011 * 60.00256 * 24 23 22 26 26 C 1.53000 * 109.47093 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.46707 * 59.99818 * 1 2 3 28 28 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47082 * 300.00023 * 1 2 3 30 30 H 1.08997 * 109.47082 * 239.99977 * 2 1 3 31 31 H 1.09000 * 109.47110 * 120.00251 * 2 1 3 32 32 H 1.09000 * 109.46936 * 300.00102 * 7 6 4 33 33 H 1.08997 * 109.47385 * 59.99405 * 7 6 4 34 34 H 1.08003 * 119.87103 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.13103 * 180.27612 * 10 9 8 36 36 H 0.96998 * 119.99561 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.12480 * 179.97438 * 20 11 10 38 38 H 1.07999 * 119.87323 * 179.97438 * 21 20 11 39 39 H 1.08993 * 109.47065 * 299.99834 * 22 3 2 40 40 H 1.09000 * 109.47072 * 60.00000 * 22 3 2 41 41 H 1.08997 * 109.47091 * 179.97438 * 23 22 3 42 42 H 1.09000 * 109.46977 * 60.00338 * 23 22 3 43 43 H 1.08993 * 109.47096 * 300.00188 * 24 23 22 44 44 H 1.09005 * 109.46880 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.47065 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47072 * 59.99724 * 25 24 23 47 47 H 1.09000 * 109.47428 * 300.00373 * 26 3 2 48 48 H 1.08997 * 109.46883 * 60.00171 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5378 2.1529 -1.2304 5 8 2.3230 2.6121 -2.0257 6 8 0.2181 2.2708 -1.4457 7 6 -0.1935 2.9619 -2.6544 8 6 -1.6984 2.9959 -2.7258 9 6 -2.3803 1.9702 -3.3621 10 6 -3.7547 1.9880 -3.4284 11 6 -4.4674 3.0588 -2.8578 12 6 -5.8793 3.0911 -2.9257 13 1 -6.4356 2.1726 -3.0404 14 6 -6.5560 4.3135 -2.8441 15 7 -5.9124 5.4327 -3.0554 16 14 -8.3779 4.3468 -2.4336 17 1 -8.5970 3.7261 -1.1025 18 1 -8.8541 5.7532 -2.4088 19 1 -9.1314 3.5877 -3.4638 20 6 -3.7645 4.0973 -2.2195 21 6 -2.3903 4.0554 -2.1594 22 6 1.5300 2.1637 1.2493 23 6 2.0406 3.6060 1.2496 24 6 3.5706 3.6055 1.2500 25 6 4.0806 2.8843 0.0007 26 6 3.5701 1.4425 0.0006 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.1930 3.9810 -2.6398 33 1 0.1995 2.4368 -3.5249 34 1 -1.8309 1.1520 -3.8038 35 1 -4.2842 1.1856 -3.9206 36 1 -6.3815 6.2798 -2.9992 37 1 -4.3014 4.9241 -1.7786 38 1 -1.8487 4.8516 -1.6704 39 1 0.4401 2.1637 1.2493 40 1 1.8934 1.6498 2.1393 41 1 1.6769 4.1200 2.1393 42 1 1.6776 4.1201 0.3597 43 1 3.9335 3.0914 2.1399 44 1 3.9342 4.6331 1.2497 45 1 5.1706 2.8843 0.0007 46 1 3.7176 3.3984 -0.8893 47 1 3.9331 0.9287 0.8908 48 1 3.9337 0.9285 -0.8891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763557734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:43 Heat of formation + Delta-G solvation = -101.420217 kcal Electronic energy + Delta-G solvation = -27065.625244 eV Core-core repulsion = 23469.733525 eV Total energy + Delta-G solvation = -3595.891720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02119 -38.29501 -37.44415 -35.97997 -34.19174 -33.78958 -30.93918 -30.68344 -29.37439 -29.13497 -27.25567 -24.51571 -23.93759 -22.80208 -22.28968 -21.08586 -20.53917 -20.04015 -19.33698 -17.39231 -16.93491 -16.55282 -15.75511 -15.39029 -15.26179 -14.48328 -14.34179 -14.09086 -13.92301 -13.76693 -13.48149 -13.22317 -13.05928 -12.72730 -12.53082 -12.36466 -12.17929 -12.03509 -11.97816 -11.59803 -11.56964 -11.30633 -11.15448 -11.12579 -11.04116 -10.97787 -10.70108 -10.60477 -10.54125 -10.14350 -10.04308 -9.97797 -9.80735 -9.60103 -9.46159 -9.20744 -7.55830 -7.44905 -6.86921 -4.46117 2.47261 2.52030 2.97414 3.00566 3.02218 3.05329 3.40944 3.85469 4.44292 4.50126 4.57285 4.65637 4.97129 5.06150 5.08523 5.25312 5.31050 5.37443 5.42525 5.55196 5.59472 5.62390 5.67993 5.69545 5.71711 5.76049 5.86915 5.93763 6.02376 6.04734 6.10999 6.14458 6.15818 6.19902 6.25318 6.31635 6.33198 6.42711 6.67959 6.86800 6.97265 7.00207 7.18691 7.26822 7.51675 7.74596 7.95771 8.01455 8.16586 8.19525 8.53966 8.78791 8.87069 10.07131 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.002918 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.447869 B = 9594.646221 C = 9780.055155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.050 4.050 4 C 0.468 3.532 5 O -0.517 6.517 6 O -0.340 6.340 7 C 0.131 3.869 8 C -0.232 4.232 9 C -0.064 4.064 10 C -0.230 4.230 11 C 0.119 3.881 12 C -0.458 4.458 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.786 5.786 16 Si 0.910 3.090 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.170 4.170 21 C -0.075 4.075 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.136 4.136 26 C -0.096 4.096 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.283 0.717 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 -5.210 8.465 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.147 4.147 3 C -0.051 4.051 4 C 0.311 3.689 5 O -0.407 6.407 6 O -0.256 6.256 7 C 0.059 3.941 8 C -0.234 4.234 9 C -0.083 4.083 10 C -0.249 4.249 11 C 0.116 3.884 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.411 5.411 16 Si 0.734 3.266 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.189 4.189 21 C -0.094 4.094 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.173 4.173 26 C -0.133 4.133 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.515 -4.786 8.165 16.499 hybrid contribution -0.754 0.219 -0.051 0.787 sum 12.760 -4.567 8.114 15.796 Atomic orbital electron populations 1.22139 0.94063 1.01745 1.04699 1.21546 0.97651 0.93077 1.02453 1.20690 0.96489 0.95998 0.91949 1.23510 0.81581 0.76893 0.86874 1.90541 1.56950 1.46404 1.46779 1.86787 1.23944 1.69581 1.45282 1.21700 0.93622 0.95190 0.83603 1.18647 0.90794 1.00280 1.13635 1.20365 0.94273 0.95732 0.97896 1.20938 0.92994 1.02353 1.08660 1.17666 0.93220 0.90387 0.87080 1.19639 0.91748 0.93648 1.43628 0.90242 1.25963 1.01150 0.95074 0.92122 1.69817 1.38829 0.99143 1.33314 0.86335 0.81760 0.78151 0.80348 1.18685 1.20246 1.18907 1.21291 0.92292 1.01587 1.03766 1.20523 0.94678 0.96118 0.98090 1.21671 1.02039 0.95317 0.95577 1.21599 0.95830 0.96595 1.02283 1.21553 0.95526 1.00326 0.98191 1.21807 0.99980 0.95813 0.99701 1.21429 0.91748 0.97929 1.02212 0.89483 0.92982 0.92199 0.91780 0.90867 0.92265 0.92310 0.89411 0.88797 0.90600 0.86313 0.89441 0.89878 0.90774 0.91468 0.92112 0.92225 0.92204 0.92271 0.89262 0.91095 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.04 37.16 0.34 -1.79 16 2 C -0.11 -1.20 4.98 -26.73 -0.13 -1.33 16 3 C -0.05 -0.60 0.52 -155.66 -0.08 -0.69 16 4 C 0.47 7.35 4.98 36.00 0.18 7.53 16 5 O -0.52 -9.11 13.41 -18.76 -0.25 -9.36 16 6 O -0.34 -5.93 7.02 -39.25 -0.28 -6.21 16 7 C 0.13 2.47 5.58 36.00 0.20 2.67 16 8 C -0.23 -5.05 5.54 -104.33 -0.58 -5.63 16 9 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 10 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 11 C 0.12 3.10 5.57 -106.83 -0.60 2.51 16 12 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 13 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 14 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 15 N -0.79 -19.78 10.95 55.55 0.61 -19.17 16 16 Si 0.91 18.10 29.59 -169.99 -5.03 13.06 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 20 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 21 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 22 C -0.11 -1.21 4.32 -26.73 -0.12 -1.32 16 23 C -0.13 -1.42 5.70 -26.73 -0.15 -1.58 16 24 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 25 C -0.14 -1.53 5.63 -26.75 -0.15 -1.68 16 26 C -0.10 -1.03 4.37 -26.75 -0.12 -1.15 16 27 H 0.09 1.35 5.31 -51.93 -0.28 1.07 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 33 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.08 1.01 6.41 -51.93 -0.33 0.68 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.83 7.22 -51.93 -0.37 0.45 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.26 5.52 -51.93 -0.29 0.97 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -26.95 371.42 -10.44 -37.39 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.81 Total: 7.39 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.28 Total: -28.70 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.53 Total: -15.57 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -26.95 -10.44 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763557734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.028 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds