Wall clock time and date at job start Tue Mar 31 2020 11:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46908 * 2 1 4 4 C 1.53001 * 109.46563 * 240.00521 * 2 1 3 5 5 C 1.52998 * 109.47551 * 299.99604 * 4 2 1 6 6 C 1.53001 * 109.46863 * 300.00586 * 5 4 2 7 7 C 1.50706 * 109.46785 * 179.97438 * 6 5 4 8 8 O 1.20822 * 119.99751 * 239.99641 * 7 6 5 9 9 O 1.34226 * 120.00120 * 60.00003 * 7 6 5 10 10 C 1.45199 * 116.99898 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.75069 * 269.72874 * 11 10 9 13 13 C 1.37619 * 120.25011 * 179.72111 * 12 11 10 14 14 C 1.40710 * 119.74358 * 0.56679 * 13 12 11 15 15 C 1.41398 * 120.24480 * 179.68135 * 14 13 12 16 16 H 1.08004 * 120.00132 * 204.41402 * 15 14 13 17 17 C 1.39944 * 119.99906 * 24.41228 * 15 14 13 18 18 N 1.30828 * 119.99950 * 17.84406 * 17 15 14 19 19 Si 1.86800 * 120.00018 * 197.84656 * 17 15 14 20 20 H 1.48500 * 109.46991 * 59.99996 * 19 17 15 21 21 H 1.48503 * 109.47230 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47177 * 299.99890 * 19 17 15 23 23 C 1.40718 * 119.51496 * 359.71007 * 14 13 12 24 24 C 1.37619 * 119.73924 * 359.97438 * 23 14 13 25 25 C 1.53002 * 109.47479 * 59.99780 * 6 5 4 26 26 C 1.52991 * 109.47152 * 120.00736 * 2 1 3 27 27 H 1.08996 * 109.46548 * 299.99489 * 1 2 3 28 28 H 1.08995 * 109.47341 * 59.99792 * 1 2 3 29 29 H 1.09003 * 109.46733 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47640 * 300.00655 * 3 2 1 32 32 H 1.09007 * 109.46866 * 60.00412 * 3 2 1 33 33 H 1.08995 * 109.47655 * 60.00359 * 4 2 1 34 34 H 1.09003 * 109.47037 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47404 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46718 * 60.00088 * 5 4 2 37 37 H 1.08994 * 109.47197 * 299.99126 * 6 5 4 38 38 H 1.09000 * 109.47124 * 299.99667 * 10 9 7 39 39 H 1.08999 * 109.47024 * 60.00326 * 10 9 7 40 40 H 1.08005 * 119.87690 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.12628 * 180.27999 * 13 12 11 42 42 H 0.97001 * 119.99547 * 180.02562 * 18 17 15 43 43 H 1.07995 * 120.12952 * 179.97438 * 23 14 13 44 44 H 1.07998 * 119.87175 * 179.97438 * 24 23 14 45 45 H 1.08995 * 109.46997 * 179.97438 * 25 6 5 46 46 H 1.09003 * 109.46661 * 59.99494 * 25 6 5 47 47 H 1.09000 * 109.46862 * 180.02562 * 26 2 1 48 48 H 1.09005 * 109.47022 * 299.99255 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5300 -2.1637 -1.2495 6 6 2.0401 -2.8850 -0.0003 7 6 1.5373 -4.3057 -0.0001 8 8 0.8428 -4.7005 0.9063 9 8 1.8611 -5.1323 -1.0068 10 6 1.3419 -6.4867 -0.9405 11 6 1.8063 -7.2622 -2.1463 12 6 1.0327 -7.2736 -3.2967 13 6 1.4498 -7.9737 -4.4057 14 6 2.6605 -8.6895 -4.3648 15 6 3.0958 -9.4179 -5.4959 16 1 3.7687 -10.2538 -5.3737 17 6 2.6546 -9.0558 -6.7736 18 7 2.1403 -7.8700 -6.9764 19 14 2.8000 -10.2654 -8.1896 20 1 2.0224 -11.4909 -7.8755 21 1 2.2654 -9.6444 -9.4281 22 1 4.2273 -10.6228 -8.3908 23 6 3.4348 -8.6756 -3.1899 24 6 3.0013 -7.9632 -2.0951 25 6 1.5301 -2.1638 1.2491 26 6 2.0401 -0.7214 1.2491 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2497 35 1 1.8936 -2.6775 -2.1393 36 1 0.4400 -2.1636 -1.2494 37 1 3.1300 -2.8850 -0.0004 38 1 1.7062 -6.9715 -0.0348 39 1 0.2524 -6.4578 -0.9242 40 1 0.1012 -6.7277 -3.3241 41 1 0.8478 -7.9776 -5.3023 42 1 1.8342 -7.6192 -7.8620 43 1 4.3655 -9.2217 -3.1474 44 1 3.5936 -7.9514 -1.1921 45 1 1.8932 -2.6780 2.1389 46 1 0.4401 -2.1638 1.2490 47 1 3.1301 -0.7209 1.2493 48 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:25 Heat of formation + Delta-G solvation = -108.636008 kcal Electronic energy + Delta-G solvation = -26016.435583 eV Core-core repulsion = 22420.230963 eV Total energy + Delta-G solvation = -3596.204620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60469 -39.11373 -37.64977 -36.02159 -33.88312 -33.54438 -31.02783 -30.73542 -29.36859 -27.74449 -27.53571 -26.73919 -23.95928 -22.86924 -22.41459 -21.08622 -20.19159 -20.01458 -18.62413 -17.39972 -17.26615 -16.39475 -15.99355 -15.35302 -15.23811 -15.02891 -14.37791 -14.20771 -13.89791 -13.84335 -13.49277 -13.17402 -13.07321 -12.59159 -12.49301 -12.22764 -12.18114 -12.10480 -12.02376 -11.88365 -11.75121 -11.60514 -11.18550 -11.16928 -11.13492 -11.00591 -10.82733 -10.64297 -10.45282 -10.36984 -10.12547 -10.11323 -9.99621 -9.67157 -9.46506 -9.21603 -7.56151 -7.44880 -6.86515 -4.46369 2.47316 2.50435 2.97511 3.00485 3.02275 3.05415 3.41994 3.85485 4.39104 4.45620 4.49799 4.60036 4.79601 4.88114 5.11428 5.17499 5.20618 5.31944 5.35161 5.40680 5.46717 5.58477 5.62106 5.65833 5.69258 5.71180 5.72393 5.75930 5.85907 5.88508 5.94976 6.00988 6.05395 6.12014 6.14139 6.25537 6.26789 6.31513 6.36933 6.86571 6.93171 6.97581 7.18612 7.26820 7.51700 7.74366 7.95571 8.01409 8.13844 8.19390 8.53852 8.78598 8.86953 10.07240 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002493 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.132818 B =11230.344163 C =12058.729831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.080 4.080 7 C 0.458 3.542 8 O -0.522 6.522 9 O -0.348 6.348 10 C 0.135 3.865 11 C -0.235 4.235 12 C -0.076 4.076 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.230 4.230 24 C -0.064 4.064 25 C -0.105 4.105 26 C -0.106 4.106 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.283 0.717 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 14.699 9.718 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.099 4.099 7 C 0.301 3.699 8 O -0.412 6.412 9 O -0.264 6.264 10 C 0.063 3.937 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.250 4.250 24 C -0.083 4.083 25 C -0.142 4.142 26 C -0.144 4.144 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.495 14.692 9.764 17.703 hybrid contribution 0.039 -0.584 -0.640 0.867 sum -1.456 14.108 9.124 16.864 Atomic orbital electron populations 1.21991 0.94639 1.02272 1.01467 1.20589 0.95842 0.95054 0.95392 1.21856 1.00931 0.95380 1.01619 1.21595 1.00821 0.94626 0.97294 1.21570 1.01459 0.95502 0.96621 1.21082 1.02546 0.88094 0.98164 1.23726 0.77595 0.88752 0.79805 1.90605 1.36321 1.77614 1.36693 1.86723 1.69184 1.24865 1.45659 1.21709 0.97287 0.77090 0.97596 1.18682 1.00689 1.08517 0.95706 1.20534 0.97653 0.98323 0.92909 1.21290 0.97513 1.02792 0.97372 1.17677 0.89923 0.89185 0.91661 1.19643 1.24991 1.13376 0.90551 0.90217 1.25970 0.92770 0.95003 1.00646 1.69823 1.29165 1.17564 1.24420 0.86328 0.79814 0.81185 0.79220 1.18710 1.20232 1.18889 1.20962 1.00726 1.07853 0.95447 1.20388 0.94312 0.96726 0.96829 1.21469 1.01955 0.94724 0.96088 1.21600 1.00659 0.94763 0.97352 0.92864 0.92753 0.91896 0.92673 0.92676 0.92794 0.91402 0.91547 0.90036 0.91193 0.87745 0.92238 0.92167 0.89374 0.86242 0.90589 0.88733 0.89353 0.91220 0.90750 0.91742 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.78 37.16 0.29 -0.93 16 2 C -0.07 -0.56 0.77 -154.51 -0.12 -0.68 16 3 C -0.14 -0.98 8.47 37.15 0.31 -0.67 16 4 C -0.11 -0.96 4.73 -26.73 -0.13 -1.08 16 5 C -0.11 -1.28 4.86 -26.73 -0.13 -1.41 16 6 C -0.08 -0.97 2.63 -91.77 -0.24 -1.21 16 7 C 0.46 7.49 7.25 36.01 0.26 7.75 16 8 O -0.52 -9.60 15.73 -18.75 -0.29 -9.89 16 9 O -0.35 -6.52 10.11 -39.25 -0.40 -6.92 16 10 C 0.14 2.63 5.58 36.01 0.20 2.83 16 11 C -0.23 -5.23 5.54 -104.33 -0.58 -5.81 16 12 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 13 C -0.17 -4.38 8.70 -38.87 -0.34 -4.71 16 14 C 0.12 3.11 5.57 -106.82 -0.60 2.51 16 15 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 16 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 17 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 19 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 24 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 25 C -0.10 -1.12 4.22 -26.73 -0.11 -1.23 16 26 C -0.11 -0.89 4.73 -26.74 -0.13 -1.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 36 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 39 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 40 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 42 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 43 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.07 0.85 6.39 -51.93 -0.33 0.52 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -27.83 379.80 -10.23 -38.07 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.96 Total: 5.21 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.88 Total: -26.08 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.69 Total: -16.81 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.83 -10.23 -38.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.570 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds