Wall clock time and date at job start Tue Mar 31 2020 12:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47660 * 240.00045 * 2 1 3 5 5 C 1.52992 * 109.47407 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47605 * 59.99751 * 5 4 2 7 7 H 1.09004 * 109.47016 * 60.00066 * 6 5 4 8 8 O 1.45195 * 109.47300 * 179.97438 * 6 5 4 9 9 C 1.34224 * 117.00363 * 270.00131 * 8 6 5 10 10 O 1.20828 * 119.99779 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00301 * 180.02562 * 9 8 6 12 12 C 1.50695 * 109.47201 * 179.97438 * 11 9 8 13 13 C 1.37640 * 120.12987 * 265.00012 * 12 11 9 14 14 C 1.38612 * 120.24557 * 179.97438 * 13 12 11 15 15 C 1.38654 * 120.50662 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.24534 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12585 * 84.72750 * 12 11 9 18 18 C 1.41392 * 120.24509 * 359.97438 * 17 12 11 19 19 H 1.08003 * 120.00206 * 333.90289 * 18 17 12 20 20 C 1.39943 * 119.99943 * 153.89271 * 18 17 12 21 21 N 1.30818 * 120.00391 * 343.76572 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 163.75672 * 20 18 17 23 23 H 1.48502 * 109.47280 * 60.00758 * 22 20 18 24 24 H 1.48503 * 109.47102 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47512 * 300.00626 * 22 20 18 26 26 C 1.53003 * 109.46843 * 300.00015 * 6 5 4 27 27 H 1.08996 * 109.47086 * 299.99693 * 26 6 5 28 28 C 1.53001 * 109.46975 * 179.97438 * 26 6 5 29 29 C 1.52999 * 109.46739 * 59.99983 * 26 6 5 30 30 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47517 * 300.00493 * 1 2 3 32 32 H 1.09005 * 109.46962 * 60.00264 * 1 2 3 33 33 H 1.08996 * 109.47033 * 59.99797 * 4 2 1 34 34 H 1.09004 * 109.46884 * 300.00019 * 4 2 1 35 35 H 1.09006 * 109.47077 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.47136 * 299.99560 * 5 4 2 37 37 H 1.09003 * 109.46648 * 299.99925 * 11 9 8 38 38 H 1.09003 * 109.46658 * 59.99739 * 11 9 8 39 39 H 1.08001 * 119.87610 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.74446 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.87565 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.12337 * 180.02562 * 16 15 14 43 43 H 0.97000 * 120.00695 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47248 * 300.00274 * 28 26 6 45 45 H 1.08994 * 109.47106 * 60.00201 * 28 26 6 46 46 H 1.08993 * 109.46985 * 180.02562 * 28 26 6 47 47 H 1.09006 * 109.46784 * 179.97438 * 29 26 6 48 48 H 1.08996 * 109.47568 * 60.00005 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0005 7 1 3.7159 -2.4709 0.0003 8 8 5.5315 -1.4443 0.0005 9 6 6.1402 -2.4804 -0.5975 10 8 5.4815 -3.3578 -1.1038 11 6 7.6451 -2.5500 -0.6364 12 6 8.0716 -3.8020 -1.3585 13 6 8.3658 -4.9434 -0.6477 14 6 8.7577 -6.0965 -1.3094 15 6 8.8587 -6.1147 -2.6922 16 6 8.5695 -4.9854 -3.4231 17 6 8.1650 -3.8105 -2.7624 18 6 7.8592 -2.6459 -3.5036 19 1 7.1790 -1.9112 -3.0987 20 6 8.4381 -2.4451 -4.7617 21 7 9.4834 -3.1452 -5.1201 22 14 7.7180 -1.1774 -5.9296 23 1 7.7658 0.1642 -5.2946 24 1 8.5072 -1.1585 -7.1874 25 1 6.3084 -1.5303 -6.2354 26 6 3.5695 -0.7220 1.2497 27 1 3.9331 0.3055 1.2499 28 6 4.0785 -1.4439 2.4990 29 6 2.0395 -0.7216 1.2493 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6767 -0.2074 -2.1392 34 1 1.6767 -1.7489 -1.2492 35 1 3.9333 -1.2360 -2.1386 36 1 3.9336 0.3058 -1.2486 37 1 8.0357 -1.6773 -1.1599 38 1 8.0344 -2.5676 0.3816 39 1 8.2901 -4.9407 0.4297 40 1 8.9870 -6.9874 -0.7436 41 1 9.1654 -7.0186 -3.1973 42 1 8.6484 -5.0019 -4.5001 43 1 9.8845 -3.0064 -5.9923 44 1 3.7145 -2.4713 2.4986 45 1 5.1684 -1.4446 2.4994 46 1 3.7148 -0.9303 3.3888 47 1 1.6761 -0.2081 2.1395 48 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776936862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:16 Heat of formation + Delta-G solvation = -108.762815 kcal Electronic energy + Delta-G solvation = -27050.126031 eV Core-core repulsion = 23453.915912 eV Total energy + Delta-G solvation = -3596.210119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28384 -38.64615 -37.46841 -35.60848 -33.65029 -33.17740 -31.91589 -31.35481 -29.48893 -27.31625 -26.74285 -25.85039 -24.98014 -22.44544 -21.18402 -20.93348 -20.40047 -19.99966 -19.24684 -17.19292 -17.06558 -16.09915 -15.72559 -15.32233 -14.82546 -14.59697 -14.45880 -14.13680 -13.95037 -13.69351 -13.41420 -13.28244 -12.69053 -12.61514 -12.52498 -12.39270 -12.10354 -11.93809 -11.80818 -11.58456 -11.56437 -11.19571 -11.09267 -11.04015 -10.99762 -10.85698 -10.73151 -10.68542 -10.52363 -10.42495 -10.30159 -9.79907 -9.59081 -9.51437 -9.39876 -9.17628 -7.35859 -7.33287 -6.76019 -4.37934 2.71907 2.89578 3.02290 3.05492 3.08897 3.26403 3.41535 3.92504 4.50731 4.53192 4.63678 4.68570 4.90705 5.00354 5.17751 5.24541 5.33253 5.37993 5.44867 5.47818 5.58149 5.65708 5.70503 5.73904 5.79951 5.81330 5.89101 5.98603 6.00199 6.02515 6.06115 6.12031 6.20894 6.26164 6.27646 6.29911 6.41028 6.42885 6.49202 6.76259 7.06106 7.09623 7.26866 7.39029 7.61653 7.88763 8.02923 8.10211 8.28166 8.54849 8.62881 8.88211 8.97844 10.18017 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.004117 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.744026 B = 6799.281421 C = 8297.690979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.094 3.906 7 H 0.080 0.920 8 O -0.362 6.362 9 C 0.458 3.542 10 O -0.493 6.493 11 C -0.042 4.042 12 C -0.193 4.193 13 C -0.077 4.077 14 C -0.240 4.240 15 C -0.105 4.105 16 C -0.159 4.159 17 C 0.131 3.869 18 C -0.458 4.458 19 H 0.073 0.927 20 C 0.079 3.921 21 N -0.793 5.793 22 Si 0.902 3.098 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.086 4.086 27 H 0.079 0.921 28 C -0.148 4.148 29 C -0.106 4.106 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 7.259 9.257 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.175 4.175 6 C 0.039 3.961 7 H 0.098 0.902 8 O -0.280 6.280 9 C 0.301 3.699 10 O -0.378 6.378 11 C -0.080 4.080 12 C -0.194 4.194 13 C -0.096 4.096 14 C -0.259 4.259 15 C -0.123 4.123 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.488 4.488 19 H 0.091 0.909 20 C -0.139 4.139 21 N -0.418 5.418 22 Si 0.727 3.273 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.105 4.105 27 H 0.097 0.903 28 C -0.205 4.205 29 C -0.144 4.144 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.640 6.968 8.903 16.226 hybrid contribution -0.326 0.423 -0.731 0.905 sum -11.966 7.391 8.172 16.266 Atomic orbital electron populations 1.21819 0.95215 1.01835 1.01520 1.21200 0.95415 0.99824 0.94975 0.91021 1.21537 0.94600 1.01004 0.97597 1.21941 0.95833 1.01525 0.98236 1.22606 0.77897 1.00565 0.95014 0.90155 1.86566 1.22016 1.47316 1.72115 1.24428 0.92670 0.78546 0.74305 1.90623 1.66805 1.38677 1.41708 1.19981 0.85933 1.00656 1.01406 1.19060 1.13412 0.93366 0.93608 1.20321 0.99296 0.93137 0.96810 1.20311 1.13880 0.97391 0.94338 1.20695 1.00518 0.97185 0.93909 1.21306 1.05019 0.91880 0.99589 1.17335 0.87549 0.92447 0.89807 1.19455 1.23926 1.04849 1.00523 0.90857 1.25866 0.93293 0.96464 0.98302 1.69801 1.15449 1.35911 1.20647 0.86452 0.80307 0.81178 0.79373 1.18908 1.20231 1.18850 1.21197 0.95150 1.00388 0.93718 0.90255 1.21802 1.02056 1.00104 0.96524 1.21644 0.93872 1.01095 0.97744 0.92667 0.92789 0.92701 0.91506 0.91685 0.90842 0.91128 0.87578 0.89539 0.89595 0.89542 0.89475 0.86435 0.90802 0.92865 0.91756 0.92632 0.91335 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.15 0.34 -0.82 16 2 C -0.10 -0.90 2.72 -90.62 -0.25 -1.14 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -1.24 5.20 -26.74 -0.14 -1.37 16 5 C -0.14 -1.94 5.56 -26.73 -0.15 -2.08 16 6 C 0.09 1.40 1.88 -26.73 -0.05 1.35 16 7 H 0.08 1.32 7.15 -51.93 -0.37 0.95 16 8 O -0.36 -6.29 9.21 -39.24 -0.36 -6.65 16 9 C 0.46 9.36 7.54 36.01 0.27 9.63 16 10 O -0.49 -11.64 15.25 -18.75 -0.29 -11.93 16 11 C -0.04 -0.86 5.29 -29.04 -0.15 -1.01 16 12 C -0.19 -4.65 4.43 -103.91 -0.46 -5.11 16 13 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 14 C -0.24 -5.55 10.05 -39.29 -0.39 -5.94 16 15 C -0.10 -2.54 10.02 -39.66 -0.40 -2.93 16 16 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 17 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 18 C -0.46 -12.05 8.14 -37.74 -0.31 -12.35 16 19 H 0.07 1.88 6.67 -52.48 -0.35 1.53 16 20 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 21 N -0.79 -20.37 10.96 55.55 0.61 -19.76 16 22 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.09 -0.99 2.47 -90.62 -0.22 -1.21 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 C -0.15 -1.62 9.05 37.16 0.34 -1.29 16 29 C -0.11 -1.01 4.48 -26.73 -0.12 -1.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.11 2.14 7.08 -51.93 -0.37 1.77 16 38 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.20 6.21 -52.49 -0.33 2.88 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -28.81 382.59 -10.53 -39.34 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.13 Total: 6.77 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -3.10 Total: -27.37 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.61 Total: -19.76 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.65 Total: -18.58 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.81 -10.53 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776936862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.420 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds