Wall clock time and date at job start Tue Mar 31 2020 12:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.53005 * 109.47268 * 239.99686 * 2 1 3 5 5 C 1.53003 * 109.46929 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46888 * 60.00521 * 5 4 2 7 7 H 1.09002 * 109.47032 * 179.97438 * 6 5 4 8 8 O 1.45199 * 109.47232 * 59.99717 * 6 5 4 9 9 C 1.34228 * 116.99979 * 90.00491 * 8 6 5 10 10 O 1.20829 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99806 * 180.02562 * 9 8 6 12 12 C 1.50704 * 109.46864 * 179.97438 * 11 9 8 13 13 C 1.37635 * 120.13138 * 264.99688 * 12 11 9 14 14 C 1.38607 * 120.25000 * 179.97438 * 13 12 11 15 15 C 1.38662 * 120.50398 * 0.02562 * 14 13 12 16 16 C 1.37594 * 120.24447 * 359.97438 * 15 14 13 17 17 C 1.40704 * 120.12536 * 84.97718 * 12 11 9 18 18 C 1.41395 * 120.24133 * 359.97438 * 17 12 11 19 19 H 1.07997 * 120.00614 * 329.77785 * 18 17 12 20 20 C 1.39952 * 119.99710 * 149.78333 * 18 17 12 21 21 N 1.30821 * 119.99729 * 162.08364 * 20 18 17 22 22 Si 1.86793 * 120.00025 * 342.08060 * 20 18 17 23 23 H 1.48495 * 109.47565 * 95.39235 * 22 20 18 24 24 H 1.48503 * 109.47292 * 215.39772 * 22 20 18 25 25 H 1.48506 * 109.47144 * 335.39322 * 22 20 18 26 26 C 1.53002 * 109.47236 * 299.99312 * 6 5 4 27 27 H 1.08995 * 109.46998 * 300.00501 * 26 6 5 28 28 C 1.52996 * 109.47236 * 180.02562 * 26 6 5 29 29 C 1.53003 * 109.46621 * 60.00524 * 26 6 5 30 30 H 1.08992 * 109.47336 * 299.99844 * 1 2 3 31 31 H 1.08995 * 109.47322 * 60.00872 * 1 2 3 32 32 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47015 * 299.99842 * 4 2 1 34 34 H 1.09005 * 109.46736 * 59.99890 * 4 2 1 35 35 H 1.08995 * 109.47454 * 299.99954 * 5 4 2 36 36 H 1.09001 * 109.46834 * 180.02562 * 5 4 2 37 37 H 1.08997 * 109.47424 * 59.99638 * 11 9 8 38 38 H 1.08997 * 109.47083 * 299.98801 * 11 9 8 39 39 H 1.08001 * 119.87182 * 359.96051 * 13 12 11 40 40 H 1.08000 * 119.75288 * 179.97438 * 14 13 12 41 41 H 1.07990 * 119.87557 * 179.70096 * 15 14 13 42 42 H 1.07998 * 120.12931 * 179.97438 * 16 15 14 43 43 H 0.97004 * 119.99764 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.47032 * 60.00341 * 28 26 6 45 45 H 1.08999 * 109.47030 * 179.97438 * 28 26 6 46 46 H 1.09000 * 109.47229 * 300.00500 * 28 26 6 47 47 H 1.08995 * 109.47454 * 60.00256 * 29 26 6 48 48 H 1.09001 * 109.47017 * 180.02562 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 1 5.1705 -1.4416 -0.0006 8 8 3.5969 -2.8107 0.0000 9 6 4.3706 -3.7304 -0.5979 10 8 5.4170 -3.4021 -1.1051 11 6 3.9335 -5.1721 -0.6375 12 6 4.9711 -5.9918 -1.3605 13 6 4.8303 -6.2552 -2.7040 14 6 5.7834 -7.0084 -3.3715 15 6 6.8876 -7.5052 -2.6958 16 6 7.0488 -7.2544 -1.3526 17 6 6.0877 -6.4905 -0.6646 18 6 6.2433 -6.2254 0.7155 19 1 5.8513 -5.3119 1.1376 20 6 6.9056 -7.1469 1.5347 21 7 7.3604 -6.7745 2.7034 22 14 7.1399 -8.9085 0.9592 23 1 8.4792 -9.0510 0.3338 24 1 7.0361 -9.8269 2.1215 25 1 6.0906 -9.2482 -0.0352 26 6 3.5705 -0.7203 1.2490 27 1 3.9335 0.3074 1.2487 28 6 4.0814 -1.4409 2.4982 29 6 2.0405 -0.7209 1.2493 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7490 -1.2491 34 1 1.6766 -0.2075 -2.1392 35 1 3.9330 0.3070 -1.2497 36 1 3.9334 -1.2342 -2.1397 37 1 2.9808 -5.2487 -1.1613 38 1 3.8197 -5.5453 0.3802 39 1 3.9739 -5.8737 -3.2401 40 1 5.6647 -7.2106 -4.4258 41 1 7.6215 -8.0950 -3.2248 42 1 7.9093 -7.6426 -0.8281 43 1 7.8190 -7.4133 3.2713 44 1 5.1715 -1.4401 2.4978 45 1 3.7185 -0.9267 3.3882 46 1 3.7188 -2.4688 2.4987 47 1 1.6775 -1.7487 1.2495 48 1 1.6771 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776936864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:20 Heat of formation + Delta-G solvation = -105.556431 kcal Electronic energy + Delta-G solvation = -27352.179339 eV Core-core repulsion = 23756.108260 eV Total energy + Delta-G solvation = -3596.071079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35964 -38.61360 -37.61324 -35.42174 -33.60758 -33.14576 -32.02629 -31.37569 -30.34637 -27.41437 -26.61680 -25.93843 -24.88108 -22.44985 -21.54342 -21.17830 -20.56471 -19.62169 -18.97425 -17.37300 -16.91740 -16.12666 -15.91717 -15.54765 -14.72303 -14.64724 -14.35876 -14.15573 -13.99096 -13.75926 -13.62837 -13.39134 -12.79738 -12.62415 -12.44906 -12.30669 -12.18162 -11.93744 -11.84350 -11.68198 -11.53467 -11.36515 -11.32763 -11.12692 -10.84226 -10.82227 -10.75150 -10.55164 -10.44671 -10.26175 -9.97732 -9.81687 -9.72831 -9.61803 -9.56349 -9.13850 -7.63341 -7.53887 -6.94984 -4.50258 2.48219 2.69965 3.01608 3.11819 3.18436 3.32044 3.40107 3.98156 4.50589 4.60764 4.65218 4.68663 5.00063 5.08028 5.23281 5.29678 5.34698 5.43166 5.49946 5.52579 5.62687 5.69397 5.73436 5.76865 5.84623 5.87981 5.93869 5.96937 6.00714 6.01465 6.07065 6.15663 6.16617 6.21640 6.26965 6.29408 6.35161 6.42780 6.54680 6.57488 6.70455 6.92939 7.08842 7.18571 7.42399 7.63822 7.72899 7.88114 8.11983 8.33514 8.55517 8.65719 8.80183 10.06994 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.003969 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.371487 B = 7053.651427 C = 8108.324123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.093 3.907 7 H 0.082 0.918 8 O -0.353 6.353 9 C 0.459 3.541 10 O -0.495 6.495 11 C -0.045 4.045 12 C -0.178 4.178 13 C -0.065 4.065 14 C -0.243 4.243 15 C -0.077 4.077 16 C -0.233 4.233 17 C 0.111 3.889 18 C -0.445 4.445 19 H 0.089 0.911 20 C 0.086 3.914 21 N -0.806 5.806 22 Si 0.910 3.090 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.243 1.243 26 C -0.084 4.084 27 H 0.081 0.919 28 C -0.150 4.150 29 C -0.107 4.107 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.285 0.715 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 9.957 -2.164 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.173 4.173 6 C 0.038 3.962 7 H 0.100 0.900 8 O -0.271 6.271 9 C 0.302 3.698 10 O -0.380 6.380 11 C -0.083 4.083 12 C -0.180 4.180 13 C -0.083 4.083 14 C -0.262 4.262 15 C -0.096 4.096 16 C -0.252 4.252 17 C 0.108 3.892 18 C -0.473 4.473 19 H 0.106 0.894 20 C -0.133 4.133 21 N -0.430 5.430 22 Si 0.736 3.264 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.166 1.166 26 C -0.102 4.102 27 H 0.099 0.901 28 C -0.207 4.207 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.268 10.086 -2.032 14.536 hybrid contribution 0.548 -0.594 -0.178 0.828 sum -9.720 9.492 -2.210 13.764 Atomic orbital electron populations 1.21809 0.95376 1.01901 1.01219 1.21140 0.95323 0.99212 0.95329 0.91646 1.21528 0.94833 1.01345 0.97105 1.21932 0.96616 1.00677 0.98031 1.22583 0.99453 0.79110 0.95032 0.90047 1.86557 1.50509 1.18036 1.72036 1.24246 0.82299 0.88811 0.74467 1.90630 1.23524 1.81372 1.42482 1.19981 0.98336 0.86022 1.03944 1.19071 0.97275 1.07678 0.93955 1.20445 0.97387 0.97069 0.93400 1.20333 0.98652 1.08990 0.98251 1.20619 0.96468 0.98014 0.94468 1.21007 1.00802 1.08955 0.94414 1.17481 0.89104 0.89276 0.93372 1.19426 1.30585 1.05725 0.91571 0.89355 1.26156 0.91152 1.01685 0.94354 1.69703 1.26221 1.37106 1.09998 0.86338 0.80679 0.80980 0.78371 1.19721 1.21870 1.16624 1.21237 0.96378 0.98761 0.93868 0.90110 1.21810 1.01212 1.01447 0.96212 1.21614 0.94281 1.01608 0.96908 0.92914 0.92986 0.92532 0.91179 0.92326 0.90845 0.91332 0.89327 0.87231 0.88968 0.88905 0.88916 0.88236 0.90495 0.92581 0.92713 0.91526 0.90758 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.90 2.72 -90.62 -0.25 -1.15 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -1.23 5.06 -26.73 -0.14 -1.37 16 5 C -0.13 -1.72 5.65 -26.73 -0.15 -1.87 16 6 C 0.09 1.38 2.18 -26.73 -0.06 1.33 16 7 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 8 O -0.35 -6.00 7.87 -39.25 -0.31 -6.30 16 9 C 0.46 9.23 7.54 36.01 0.27 9.50 16 10 O -0.49 -11.62 15.25 -18.75 -0.29 -11.91 16 11 C -0.05 -0.89 5.31 -29.03 -0.15 -1.04 16 12 C -0.18 -4.08 4.43 -103.91 -0.46 -4.54 16 13 C -0.06 -1.38 9.66 -39.67 -0.38 -1.77 16 14 C -0.24 -5.18 10.05 -39.29 -0.39 -5.57 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 16 C -0.23 -5.76 7.17 -38.87 -0.28 -6.04 16 17 C 0.11 2.82 5.10 -106.82 -0.54 2.27 16 18 C -0.44 -11.90 8.56 -37.74 -0.32 -12.22 16 19 H 0.09 2.49 7.00 -52.49 -0.37 2.12 16 20 C 0.09 2.23 5.41 -17.34 -0.09 2.14 16 21 N -0.81 -21.39 13.93 55.55 0.77 -20.61 16 22 Si 0.91 20.74 24.52 -169.99 -4.17 16.57 16 23 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.24 -5.64 6.86 56.52 0.39 -5.25 16 26 C -0.08 -1.02 2.55 -90.62 -0.23 -1.25 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 C -0.15 -1.97 9.05 37.16 0.34 -1.64 16 29 C -0.11 -1.16 4.34 -26.73 -0.12 -1.27 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 38 H 0.11 2.16 7.14 -51.93 -0.37 1.79 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.10 2.45 4.76 -52.49 -0.25 2.20 16 43 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 47 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -28.96 375.41 -9.41 -38.37 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.06 Total: 5.76 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -3.02 Total: -27.53 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.77 Total: -20.61 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.59 Total: -18.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.17 Total: 16.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.96 -9.41 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776936864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.187 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds