Wall clock time and date at job start Tue Mar 31 2020 12:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08995 * 109.47010 * 2 1 4 4 C 1.53003 * 109.46977 * 240.00346 * 2 1 3 5 5 C 1.52995 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47154 * 59.99421 * 5 4 2 7 7 H 1.09005 * 109.47052 * 60.00505 * 6 5 4 8 8 O 1.45202 * 109.47172 * 180.02562 * 6 5 4 9 9 C 1.34235 * 116.99811 * 270.00711 * 8 6 5 10 10 O 1.20818 * 120.00304 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99661 * 179.97438 * 9 8 6 12 12 C 1.50702 * 109.46732 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.12557 * 264.72223 * 12 11 9 14 14 C 1.38622 * 120.24527 * 179.70273 * 13 12 11 15 15 C 1.38657 * 120.49686 * 0.60091 * 14 13 12 16 16 C 1.37592 * 120.25249 * 359.68314 * 15 14 13 17 17 C 1.40696 * 120.12645 * 85.00350 * 12 11 9 18 18 C 1.41388 * 120.24567 * 0.02562 * 17 12 11 19 19 H 1.07998 * 120.00071 * 334.58436 * 18 17 12 20 20 C 1.39952 * 120.00305 * 154.58569 * 18 17 12 21 21 N 1.30828 * 119.99524 * 342.83583 * 20 18 17 22 22 Si 1.86795 * 120.00188 * 162.83843 * 20 18 17 23 23 H 1.48506 * 109.47088 * 94.65021 * 22 20 18 24 24 H 1.48493 * 109.47246 * 214.64844 * 22 20 18 25 25 H 1.48505 * 109.47341 * 334.65013 * 22 20 18 26 26 C 1.52995 * 109.47542 * 300.00099 * 6 5 4 27 27 H 1.09003 * 109.47284 * 179.97438 * 26 6 5 28 28 C 1.52997 * 109.47229 * 300.00313 * 26 6 5 29 29 C 1.53001 * 109.46972 * 120.00276 * 2 1 3 30 30 H 1.08998 * 109.46667 * 299.99607 * 1 2 3 31 31 H 1.08993 * 109.46910 * 59.99749 * 1 2 3 32 32 H 1.09005 * 109.46961 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46910 * 59.99673 * 4 2 1 34 34 H 1.09007 * 109.46585 * 299.99816 * 4 2 1 35 35 H 1.09005 * 109.46729 * 299.99728 * 5 4 2 36 36 H 1.08997 * 109.47244 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.47084 * 299.99356 * 11 9 8 38 38 H 1.09001 * 109.46998 * 59.99588 * 11 9 8 39 39 H 1.07995 * 119.87908 * 359.97438 * 13 12 11 40 40 H 1.07994 * 119.75240 * 180.30193 * 14 13 12 41 41 H 1.08005 * 119.87111 * 179.69621 * 15 14 13 42 42 H 1.08003 * 120.12661 * 180.02562 * 16 15 14 43 43 H 0.96995 * 119.99349 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.47483 * 59.99428 * 28 26 6 45 45 H 1.09007 * 109.46880 * 180.02562 * 28 26 6 46 46 H 1.08997 * 109.47126 * 299.99337 * 28 26 6 47 47 H 1.09004 * 109.46912 * 59.99945 * 29 2 1 48 48 H 1.08997 * 109.47040 * 299.99800 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 1 3.7159 -2.4709 0.0000 8 8 5.5316 -1.4434 0.0008 9 6 6.1412 -2.4790 -0.5974 10 8 5.4833 -3.3565 -1.1042 11 6 7.6461 -2.5470 -0.6367 12 6 8.0736 -3.7986 -1.3590 13 6 8.3747 -4.9379 -0.6478 14 6 8.7622 -6.0924 -1.3100 15 6 8.8632 -6.1103 -2.6927 16 6 8.5727 -4.9814 -3.4237 17 6 8.1722 -3.8054 -2.7625 18 6 7.8717 -2.6391 -3.5031 19 1 7.2003 -1.8982 -3.0949 20 6 8.4444 -2.4446 -4.7652 21 7 9.4926 -3.1413 -5.1222 22 14 7.7122 -1.1903 -5.9399 23 1 8.4325 0.1006 -5.7977 24 1 7.8468 -1.6811 -7.3349 25 1 6.2753 -0.9932 -5.6210 26 6 3.5696 -0.7222 1.2495 27 1 3.9323 -1.2365 2.1394 28 6 4.0801 0.7202 1.2498 29 6 2.0401 -0.7213 1.2492 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -0.2073 -2.1392 34 1 1.6767 -1.7489 -1.2493 35 1 3.9337 0.3058 -1.2488 36 1 3.9334 -1.2359 -2.1388 37 1 8.0357 -1.6740 -1.1603 38 1 8.0358 -2.5641 0.3811 39 1 8.3045 -4.9337 0.4299 40 1 8.9919 -6.9833 -0.7443 41 1 9.1708 -7.0140 -3.1980 42 1 8.6517 -4.9977 -4.5007 43 1 9.8893 -3.0068 -5.9970 44 1 3.7171 1.2342 0.3599 45 1 3.7171 1.2338 2.1401 46 1 5.1700 0.7198 1.2500 47 1 1.6767 -1.7490 1.2491 48 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776936866.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:24 Heat of formation + Delta-G solvation = -104.454579 kcal Electronic energy + Delta-G solvation = -27106.678527 eV Core-core repulsion = 23510.655227 eV Total energy + Delta-G solvation = -3596.023300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36284 -38.82025 -37.48862 -35.59937 -33.65474 -32.83005 -31.85102 -31.25382 -29.49255 -27.34424 -26.88664 -25.93673 -24.98902 -22.59654 -21.73061 -20.96576 -20.56562 -19.28509 -18.79830 -17.20132 -17.02772 -16.29463 -15.64771 -15.31763 -14.90223 -14.64479 -14.48936 -14.27183 -13.86453 -13.72219 -13.47175 -13.17408 -12.79757 -12.74104 -12.60120 -12.14847 -12.11593 -11.81139 -11.72203 -11.63118 -11.58862 -11.19880 -11.14764 -11.07982 -10.99320 -10.85529 -10.74985 -10.60670 -10.46668 -10.41923 -10.14405 -9.77021 -9.59202 -9.51029 -9.40589 -9.16816 -7.35854 -7.33935 -6.77342 -4.37536 2.71391 2.88205 3.02439 3.06051 3.11253 3.25414 3.41993 3.92272 4.51338 4.55322 4.63082 4.70210 4.95057 5.01994 5.14619 5.23929 5.32374 5.41055 5.47021 5.50288 5.54010 5.63673 5.72649 5.76777 5.80232 5.87335 5.88850 5.95689 5.99070 6.02272 6.07105 6.16864 6.23923 6.25767 6.27928 6.32580 6.42333 6.48579 6.50215 6.76259 7.05732 7.09305 7.26817 7.38960 7.61583 7.88954 8.02862 8.10436 8.27992 8.55006 8.62829 8.87996 8.97830 10.16849 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004037 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.105912 B = 6934.513797 C = 8211.420721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.139 4.139 6 C 0.094 3.906 7 H 0.080 0.920 8 O -0.361 6.361 9 C 0.457 3.543 10 O -0.493 6.493 11 C -0.042 4.042 12 C -0.194 4.194 13 C -0.077 4.077 14 C -0.241 4.241 15 C -0.104 4.104 16 C -0.160 4.160 17 C 0.131 3.869 18 C -0.457 4.457 19 H 0.074 0.926 20 C 0.079 3.921 21 N -0.791 5.791 22 Si 0.901 3.099 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.261 1.261 26 C -0.086 4.086 27 H 0.075 0.925 28 C -0.147 4.147 29 C -0.107 4.107 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.280 0.720 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 7.907 8.868 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.176 4.176 6 C 0.039 3.961 7 H 0.098 0.902 8 O -0.280 6.280 9 C 0.300 3.700 10 O -0.378 6.378 11 C -0.080 4.080 12 C -0.195 4.195 13 C -0.095 4.095 14 C -0.260 4.260 15 C -0.122 4.122 16 C -0.179 4.179 17 C 0.128 3.872 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.139 4.139 21 N -0.416 5.416 22 Si 0.726 3.274 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.185 1.185 26 C -0.105 4.105 27 H 0.094 0.906 28 C -0.204 4.204 29 C -0.144 4.144 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.641 7.617 8.513 16.310 hybrid contribution -0.320 0.360 -0.715 0.862 sum -11.961 7.977 7.798 16.356 Atomic orbital electron populations 1.21827 0.95311 1.01796 1.01481 1.21238 0.95280 1.00101 0.94912 0.90663 1.21533 0.94625 1.00978 0.97575 1.21960 0.95817 1.01734 0.98101 1.22563 0.77894 1.00322 0.95301 0.90238 1.86579 1.21987 1.47263 1.72152 1.24438 0.92680 0.78559 0.74316 1.90620 1.66860 1.38652 1.41688 1.19977 0.85930 1.00648 1.01407 1.19040 1.13419 0.93443 0.93607 1.20323 0.99262 0.93147 0.96797 1.20309 1.14019 0.97353 0.94328 1.20692 1.00461 0.97184 0.93911 1.21293 1.05159 0.91906 0.99547 1.17336 0.87529 0.92475 0.89815 1.19487 1.24380 1.04545 1.00256 0.90797 1.25879 0.93285 0.96371 0.98401 1.69824 1.15448 1.35801 1.20566 0.86404 0.80858 0.80656 0.79527 1.19454 1.19953 1.18453 1.21158 0.95168 0.97220 0.96925 0.90634 1.21878 1.02030 0.95078 1.01424 1.21600 0.93957 1.00950 0.97901 0.92812 0.92739 0.92712 0.91554 0.91738 0.90805 0.90961 0.87582 0.89535 0.89594 0.89545 0.89486 0.86485 0.90866 0.92121 0.93038 0.91681 0.91769 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.10 -0.91 2.45 -90.61 -0.22 -1.13 16 3 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 4 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.14 -1.95 5.28 -26.73 -0.14 -2.09 16 6 C 0.09 1.40 2.13 -26.73 -0.06 1.34 16 7 H 0.08 1.31 7.16 -51.93 -0.37 0.93 16 8 O -0.36 -6.27 9.21 -39.27 -0.36 -6.63 16 9 C 0.46 9.36 7.57 36.01 0.27 9.63 16 10 O -0.49 -11.67 15.25 -18.74 -0.29 -11.96 16 11 C -0.04 -0.86 5.29 -29.03 -0.15 -1.01 16 12 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 13 C -0.08 -1.77 9.66 -39.66 -0.38 -2.16 16 14 C -0.24 -5.58 10.05 -39.28 -0.39 -5.97 16 15 C -0.10 -2.52 10.02 -39.66 -0.40 -2.92 16 16 C -0.16 -4.25 8.69 -38.87 -0.34 -4.59 16 17 C 0.13 3.49 5.57 -106.83 -0.59 2.89 16 18 C -0.46 -12.01 8.15 -37.74 -0.31 -12.32 16 19 H 0.07 1.90 6.66 -52.49 -0.35 1.55 16 20 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 21 N -0.79 -20.30 10.98 55.55 0.61 -19.69 16 22 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.09 -0.99 2.94 -90.65 -0.27 -1.25 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 C -0.15 -1.55 8.36 37.16 0.31 -1.24 16 29 C -0.11 -1.01 4.73 -26.75 -0.13 -1.14 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.11 2.13 7.05 -51.93 -0.37 1.77 16 38 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.19 6.21 -52.48 -0.33 2.86 16 43 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 44 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -28.86 375.58 -10.33 -39.20 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.78 Total: 7.06 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.15 Total: -27.41 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.61 Total: -19.69 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.65 Total: -18.59 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.86 -10.33 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776936866.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.258 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds