Wall clock time and date at job start Tue Mar 31 2020 12:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46903 * 2 1 4 4 C 1.53003 * 109.47099 * 239.99826 * 2 1 3 5 5 C 1.52994 * 109.47201 * 299.99943 * 4 2 1 6 6 C 1.52995 * 109.47495 * 299.99967 * 5 4 2 7 7 C 1.53012 * 109.46992 * 60.00227 * 6 5 4 8 8 H 1.08998 * 109.46926 * 59.99689 * 7 6 5 9 9 C 1.52995 * 109.46992 * 179.97438 * 7 6 5 10 10 O 1.45191 * 109.47384 * 294.99934 * 9 7 6 11 11 C 1.34238 * 117.00247 * 180.02562 * 10 9 7 12 12 O 1.20823 * 119.99553 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00128 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47100 * 179.97438 * 13 11 10 15 15 C 1.37637 * 120.12601 * 264.99818 * 14 13 11 16 16 C 1.38617 * 120.24657 * 180.02562 * 15 14 13 17 17 C 1.38659 * 120.50224 * 359.97438 * 16 15 14 18 18 C 1.37599 * 120.24684 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.12728 * 84.72994 * 14 13 11 20 20 C 1.41400 * 120.24557 * 359.97438 * 19 14 13 21 21 H 1.08004 * 119.99440 * 333.90249 * 20 19 14 22 22 C 1.39941 * 120.00043 * 153.90303 * 20 19 14 23 23 N 1.30819 * 119.99953 * 343.71134 * 22 20 19 24 24 Si 1.86799 * 119.99872 * 163.71321 * 22 20 19 25 25 H 1.48502 * 109.47324 * 94.96176 * 24 22 20 26 26 H 1.48502 * 109.47127 * 214.96438 * 24 22 20 27 27 H 1.48499 * 109.47053 * 334.95971 * 24 22 20 28 28 C 1.52995 * 109.46579 * 299.99882 * 7 6 5 29 29 H 1.08997 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47161 * 300.00036 * 1 2 3 31 31 H 1.08997 * 109.46740 * 60.00567 * 1 2 3 32 32 H 1.08998 * 109.46869 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46904 * 60.00185 * 4 2 1 34 34 H 1.09001 * 109.47057 * 179.97438 * 5 4 2 35 35 H 1.09008 * 109.47150 * 60.00075 * 5 4 2 36 36 H 1.08998 * 109.47539 * 300.00291 * 6 5 4 37 37 H 1.08998 * 109.47269 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47308 * 55.00210 * 9 7 6 39 39 H 1.08999 * 109.47267 * 174.99462 * 9 7 6 40 40 H 1.08998 * 109.47683 * 299.99985 * 13 11 10 41 41 H 1.09000 * 109.47448 * 59.99846 * 13 11 10 42 42 H 1.07996 * 119.88146 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.75054 * 179.97438 * 16 15 14 44 44 H 1.07999 * 119.87614 * 180.02562 * 17 16 15 45 45 H 1.08000 * 120.12690 * 179.97438 * 18 17 16 46 46 H 0.97009 * 119.99907 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.47211 * 179.97438 * 28 7 6 48 48 H 1.08998 * 109.47649 * 300.00003 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1637 1.2492 9 6 2.0394 -2.8854 2.4985 10 8 1.4600 -4.2153 2.5593 11 6 1.8076 -4.9844 3.6032 12 8 2.5710 -4.5603 4.4381 13 6 1.2455 -6.3765 3.7337 14 6 1.7894 -7.0228 4.9816 15 6 2.9000 -7.8329 4.9123 16 6 3.4021 -8.4292 6.0585 17 6 2.7937 -8.2172 7.2864 18 6 1.6824 -7.4111 7.3793 19 6 1.1673 -6.7961 6.2230 20 6 0.0295 -5.9608 6.3074 21 1 -0.1255 -5.1836 5.5735 22 6 -0.8958 -6.1411 7.3417 23 7 -0.8959 -7.2517 8.0329 24 14 -2.1306 -4.7958 7.7353 25 1 -3.4051 -5.0702 7.0242 26 1 -2.3775 -4.7635 9.1993 27 1 -1.5907 -3.4842 7.2954 28 6 2.0400 -0.7213 1.2493 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1301 -0.7209 -1.2494 33 1 1.6768 -0.2075 -2.1392 34 1 1.8931 -2.6775 -2.1394 35 1 0.4400 -2.1638 -1.2492 36 1 3.1301 -2.8850 0.0001 37 1 1.6764 -3.9125 0.0002 38 1 3.1257 -2.9640 2.4551 39 1 1.7511 -2.3225 3.3862 40 1 0.1585 -6.3253 3.7948 41 1 1.5330 -6.9674 2.8640 42 1 3.3821 -8.0047 3.9613 43 1 4.2737 -9.0637 5.9948 44 1 3.1936 -8.6864 8.1731 45 1 1.2098 -7.2477 8.3366 46 1 -1.5370 -7.3766 8.7502 47 1 1.6763 -0.2073 2.1390 48 1 3.1300 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777164160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:06 Heat of formation + Delta-G solvation = -107.678375 kcal Electronic energy + Delta-G solvation = -26453.778697 eV Core-core repulsion = 22857.615603 eV Total energy + Delta-G solvation = -3596.163094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.06522 -39.17511 -37.58575 -35.79155 -33.65298 -32.68409 -31.80584 -31.53235 -29.49317 -27.40887 -26.95783 -25.82101 -24.94112 -22.49185 -21.54435 -20.97917 -20.79882 -19.34466 -18.74880 -17.20086 -16.92707 -16.20436 -16.06194 -15.48225 -15.11816 -14.76619 -14.55125 -14.34767 -13.99761 -13.84816 -13.60630 -13.24724 -12.92558 -12.62439 -12.48194 -12.34089 -12.19870 -11.79423 -11.73125 -11.59913 -11.44279 -11.25932 -11.20945 -11.12104 -11.02815 -10.99058 -10.74318 -10.45748 -10.41501 -10.28093 -10.15086 -10.01261 -9.65926 -9.51586 -9.40568 -9.17760 -7.36225 -7.33536 -6.76470 -4.38123 2.70772 2.88050 3.01103 3.06357 3.11757 3.25188 3.41265 3.92665 4.48674 4.49269 4.53384 4.64206 4.89761 5.03281 5.10908 5.18452 5.24843 5.29072 5.40692 5.48256 5.52835 5.55525 5.64311 5.68459 5.75721 5.80081 5.81152 5.85438 5.99002 6.01035 6.05234 6.07225 6.10782 6.14808 6.26252 6.30637 6.38153 6.41752 6.48876 6.75243 7.04122 7.06111 7.26568 7.38705 7.61457 7.88439 8.02794 8.09969 8.27836 8.52700 8.62457 8.87980 8.97501 10.17525 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003356 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.965448 B = 8340.794078 C = 9786.181073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.087 4.087 8 H 0.084 0.916 9 C 0.070 3.930 10 O -0.366 6.366 11 C 0.458 3.542 12 O -0.494 6.494 13 C -0.042 4.042 14 C -0.194 4.194 15 C -0.077 4.077 16 C -0.240 4.240 17 C -0.104 4.104 18 C -0.159 4.159 19 C 0.130 3.870 20 C -0.458 4.458 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.792 5.792 24 Si 0.903 3.097 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.109 4.109 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.280 0.720 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 10.616 -14.706 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.105 4.105 8 H 0.102 0.898 9 C -0.005 4.005 10 O -0.285 6.285 11 C 0.300 3.700 12 O -0.379 6.379 13 C -0.079 4.079 14 C -0.195 4.195 15 C -0.095 4.095 16 C -0.259 4.259 17 C -0.123 4.123 18 C -0.178 4.178 19 C 0.128 3.872 20 C -0.487 4.487 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.418 5.418 24 Si 0.727 3.273 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.185 1.185 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.136 0.864 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.429 10.657 -14.260 17.859 hybrid contribution -0.429 0.667 0.437 0.905 sum 0.999 11.324 -13.822 17.897 Atomic orbital electron populations 1.21969 0.95251 1.02425 1.01415 1.21062 0.96054 0.98877 0.94742 0.91289 1.21579 1.00494 0.95896 0.97291 1.21576 1.01121 0.95346 0.97804 1.21562 1.00515 0.99640 0.93346 1.21217 1.01782 0.94032 0.93472 0.89758 1.22956 0.97851 0.81296 0.98365 1.86508 1.67569 1.26743 1.47648 1.24449 0.79075 0.88435 0.78006 1.90635 1.33240 1.73582 1.40476 1.19975 1.02488 0.87221 0.98207 1.19061 1.01833 1.05957 0.92676 1.20325 0.95307 0.97524 0.96394 1.20317 1.03382 1.08728 0.93513 1.20701 0.96648 0.99115 0.95830 1.21307 0.96289 1.01267 0.98920 1.17350 0.90751 0.89381 0.89737 1.19492 1.04706 1.14749 1.09783 0.90818 1.25876 0.98074 0.95383 0.94647 1.69817 1.32116 1.22828 1.17007 0.86384 0.80301 0.82130 0.78497 1.19454 1.19948 1.18497 1.21542 1.00801 0.94318 0.97977 0.91746 0.92759 0.92953 0.92090 0.92234 0.92163 0.91605 0.92178 0.90993 0.91845 0.91621 0.87529 0.89469 0.89567 0.89519 0.89457 0.86420 0.90869 0.91609 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.50 37.16 0.32 -0.92 16 2 C -0.09 -0.72 3.20 -90.61 -0.29 -1.01 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.90 5.45 -26.73 -0.15 -1.04 16 5 C -0.12 -1.03 5.65 -26.74 -0.15 -1.18 16 6 C -0.11 -1.17 5.10 -26.73 -0.14 -1.31 16 7 C -0.09 -0.97 2.16 -90.62 -0.20 -1.16 16 8 H 0.08 0.97 6.43 -51.93 -0.33 0.63 16 9 C 0.07 1.01 4.84 37.15 0.18 1.19 16 10 O -0.37 -6.33 9.76 -39.28 -0.38 -6.71 16 11 C 0.46 9.40 7.57 36.00 0.27 9.67 16 12 O -0.49 -11.82 15.78 -18.75 -0.30 -12.11 16 13 C -0.04 -0.84 5.29 -29.04 -0.15 -0.99 16 14 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 15 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 16 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 17 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 18 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 19 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 20 C -0.46 -12.07 8.14 -37.74 -0.31 -12.38 16 21 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 22 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 23 N -0.79 -20.35 10.96 55.55 0.61 -19.74 16 24 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.11 -1.03 4.73 -26.73 -0.13 -1.15 16 29 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.56 6.43 -51.92 -0.33 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 38 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 39 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 40 H 0.11 2.13 7.08 -51.93 -0.37 1.77 16 41 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 46 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -29.08 377.12 -10.65 -39.73 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.84 Total: 5.62 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.40 Total: -26.27 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.74 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.68 Total: -18.83 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.08 -10.65 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.949 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds