Wall clock time and date at job start Tue Mar 31 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47520 * 2 1 4 4 C 1.53003 * 109.46981 * 239.99647 * 2 1 3 5 5 C 1.52999 * 109.47084 * 300.00143 * 4 2 1 6 6 C 1.53000 * 109.47168 * 299.99771 * 5 4 2 7 7 C 1.53001 * 109.46888 * 60.00692 * 6 5 4 8 8 H 1.08996 * 109.47140 * 59.99494 * 7 6 5 9 9 O 1.45197 * 109.46914 * 179.97438 * 7 6 5 10 10 C 1.34231 * 117.00077 * 269.99389 * 9 7 6 11 11 O 1.20827 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00059 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.47050 * 180.02562 * 12 10 9 14 14 C 1.37647 * 120.12796 * 265.00257 * 13 12 10 15 15 C 1.38609 * 120.24584 * 180.02562 * 14 13 12 16 16 C 1.38653 * 120.50474 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.24742 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12970 * 84.72805 * 13 12 10 19 19 C 1.41402 * 120.24061 * 0.02562 * 18 13 12 20 20 H 1.07997 * 119.99540 * 333.89381 * 19 18 13 21 21 C 1.39952 * 119.99899 * 153.90050 * 19 18 13 22 22 N 1.30821 * 120.00004 * 343.70460 * 21 19 18 23 23 Si 1.86797 * 119.99589 * 163.70378 * 21 19 18 24 24 H 1.48500 * 109.47452 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47276 * 120.00168 * 23 21 19 26 26 H 1.48502 * 109.46708 * 239.99794 * 23 21 19 27 27 C 1.52995 * 109.46850 * 299.99328 * 7 6 5 28 28 H 1.09003 * 109.47615 * 300.00646 * 27 7 6 29 29 C 1.53003 * 109.47284 * 180.02562 * 27 7 6 30 30 H 1.08994 * 109.47295 * 300.00265 * 1 2 3 31 31 H 1.09004 * 109.47129 * 60.00272 * 1 2 3 32 32 H 1.09002 * 109.47471 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47061 * 60.00799 * 4 2 1 34 34 H 1.09005 * 109.46816 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47242 * 60.00512 * 5 4 2 36 36 H 1.09007 * 109.46960 * 180.02562 * 5 4 2 37 37 H 1.09006 * 109.47070 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.47657 * 299.99949 * 6 5 4 39 39 H 1.08995 * 109.47785 * 300.00399 * 12 10 9 40 40 H 1.09004 * 109.46831 * 60.00763 * 12 10 9 41 41 H 1.07997 * 119.87316 * 0.02562 * 14 13 12 42 42 H 1.08009 * 119.74813 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.87980 * 180.02562 * 16 15 14 44 44 H 1.07998 * 120.12498 * 179.97438 * 17 16 15 45 45 H 0.96995 * 119.99441 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.46816 * 300.00189 * 29 27 7 47 47 H 1.08993 * 109.46711 * 60.00052 * 29 27 7 48 48 H 1.08997 * 109.47002 * 180.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2491 6 6 2.0399 -2.8850 0.0001 7 6 1.5298 -2.1638 1.2493 8 1 0.4399 -2.1638 1.2492 9 8 2.0134 -2.8486 2.4348 10 6 1.2395 -3.8261 2.9322 11 8 0.1929 -4.1008 2.3944 12 6 1.6765 -4.5818 4.1606 13 6 0.6387 -5.6175 4.5089 14 6 -0.3389 -5.3319 5.4348 15 6 -1.2943 -6.2829 5.7574 16 6 -1.2777 -7.5305 5.1526 17 6 -0.3097 -7.8379 4.2242 18 6 0.6619 -6.8781 3.8846 19 6 1.6582 -7.1809 2.9280 20 1 2.1242 -6.3866 2.3638 21 6 2.0404 -8.5099 2.7124 22 7 1.7294 -9.4303 3.5885 23 14 2.9946 -8.9693 1.1736 24 1 3.2183 -7.7549 0.3488 25 1 4.3038 -9.5545 1.5592 26 1 2.2196 -9.9640 0.3892 27 6 2.0399 -0.7214 1.2493 28 1 3.1299 -0.7213 1.2493 29 6 1.5304 -0.0002 2.4988 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 0.4399 -2.1638 -1.2492 36 1 1.8936 -2.6779 -2.1389 37 1 1.6769 -3.9129 -0.0001 38 1 3.1299 -2.8851 0.0001 39 1 2.6291 -5.0739 3.9648 40 1 1.7907 -3.8872 4.9929 41 1 -0.3615 -4.3632 5.9117 42 1 -2.0575 -6.0503 6.4854 43 1 -2.0272 -8.2637 5.4112 44 1 -0.2984 -8.8104 3.7546 45 1 1.9946 -10.3513 3.4391 46 1 0.4404 -0.0001 2.4992 47 1 1.8940 -0.5141 3.3885 48 1 1.8934 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779373012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:29 Heat of formation + Delta-G solvation = -102.238557 kcal Electronic energy + Delta-G solvation = -27368.311945 eV Core-core repulsion = 23772.384740 eV Total energy + Delta-G solvation = -3595.927206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.42883 -38.84991 -37.48381 -35.53696 -33.64959 -32.87660 -31.89459 -30.93189 -29.48748 -27.66573 -26.96151 -25.75683 -25.04197 -22.65261 -21.44849 -20.98000 -20.73730 -19.35446 -18.58814 -17.19189 -17.14487 -16.04282 -15.70931 -15.32970 -15.10713 -14.67137 -14.42262 -14.10527 -13.99092 -13.78087 -13.55777 -13.16789 -12.83161 -12.62119 -12.48659 -12.20824 -12.05590 -11.81294 -11.67467 -11.61074 -11.58203 -11.25814 -11.14459 -11.05178 -11.00533 -10.85108 -10.71534 -10.58623 -10.46783 -10.40255 -10.06082 -9.78997 -9.58262 -9.51242 -9.39162 -9.18557 -7.35838 -7.33288 -6.76266 -4.37798 2.70828 2.88070 3.02828 3.06877 3.12332 3.24868 3.42010 3.92707 4.50703 4.57876 4.63228 4.70541 4.98427 5.03673 5.21045 5.23951 5.27681 5.36274 5.45330 5.48511 5.60352 5.69094 5.73698 5.77428 5.84466 5.86890 5.94574 5.96527 5.99805 6.02382 6.11419 6.15622 6.20791 6.26265 6.28900 6.34693 6.42133 6.46009 6.49204 6.76328 7.06284 7.10320 7.26930 7.38985 7.61820 7.88748 8.03302 8.10254 8.28174 8.55365 8.63250 8.88415 8.97818 10.17765 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.004337 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.047940 B = 6454.545150 C = 7891.624432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.092 3.908 8 H 0.084 0.916 9 O -0.362 6.362 10 C 0.458 3.542 11 O -0.493 6.493 12 C -0.042 4.042 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.105 4.105 17 C -0.158 4.158 18 C 0.130 3.870 19 C -0.457 4.457 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.081 4.081 28 H 0.079 0.921 29 C -0.150 4.150 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.280 0.720 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 14.665 -6.347 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.101 4.101 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.175 4.175 7 C 0.038 3.962 8 H 0.102 0.898 9 O -0.281 6.281 10 C 0.301 3.699 11 O -0.378 6.378 12 C -0.080 4.080 13 C -0.194 4.194 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.123 4.123 17 C -0.177 4.177 18 C 0.128 3.872 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.418 5.418 23 Si 0.727 3.273 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.100 4.100 28 H 0.097 0.903 29 C -0.207 4.207 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.230 14.342 -6.492 15.900 hybrid contribution 0.312 -0.422 -0.752 0.918 sum 2.543 13.920 -7.244 15.897 Atomic orbital electron populations 1.22051 0.95223 1.02580 1.01680 1.21112 0.96144 0.98993 0.93858 0.90710 1.21621 1.00700 0.95723 0.97378 1.21521 1.01314 0.95271 0.97371 1.21942 1.01594 1.00253 0.93743 1.22650 0.99946 0.90716 0.82937 0.89762 1.86563 1.51123 1.47584 1.42780 1.24417 0.82262 0.77413 0.85833 1.90619 1.24086 1.63620 1.59522 1.19978 1.01077 0.95486 0.91445 1.19065 1.00258 0.96326 1.03798 1.20318 0.94883 0.96802 0.97546 1.20310 1.02744 0.95736 1.07098 1.20699 0.98146 0.95551 0.97936 1.21305 0.95120 1.00651 1.00674 1.17347 0.90678 0.89829 0.89357 1.19519 1.18294 0.92390 1.18439 0.90781 1.25877 0.95204 0.96307 0.96597 1.69822 1.37125 1.02885 1.31940 0.86350 0.79392 0.79507 0.82083 1.18438 1.19890 1.19671 1.21197 1.01059 0.92475 0.95226 0.90310 1.21865 1.01317 0.99775 0.97730 0.92269 0.92738 0.91849 0.91840 0.91803 0.91399 0.91606 0.90927 0.91189 0.87585 0.89551 0.89605 0.89547 0.89481 0.86433 0.90927 0.92510 0.91840 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.15 37.16 0.30 -1.25 16 2 C -0.08 -0.79 2.72 -90.62 -0.25 -1.04 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.09 5.45 -26.73 -0.15 -1.24 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.14 -1.96 5.56 -26.73 -0.15 -2.10 16 7 C 0.09 1.37 1.61 -26.73 -0.04 1.33 16 8 H 0.08 1.38 5.44 -51.93 -0.28 1.10 16 9 O -0.36 -6.33 9.21 -39.26 -0.36 -6.69 16 10 C 0.46 9.37 7.54 36.00 0.27 9.64 16 11 O -0.49 -11.63 15.25 -18.75 -0.29 -11.91 16 12 C -0.04 -0.86 5.29 -29.04 -0.15 -1.02 16 13 C -0.19 -4.65 4.43 -103.91 -0.46 -5.11 16 14 C -0.08 -1.77 9.66 -39.66 -0.38 -2.16 16 15 C -0.24 -5.53 10.05 -39.29 -0.39 -5.93 16 16 C -0.10 -2.54 10.02 -39.66 -0.40 -2.94 16 17 C -0.16 -4.20 8.68 -38.87 -0.34 -4.54 16 18 C 0.13 3.47 5.56 -106.83 -0.59 2.88 16 19 C -0.46 -12.01 8.14 -37.74 -0.31 -12.31 16 20 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 22 N -0.79 -20.33 10.95 55.55 0.61 -19.72 16 23 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.08 -0.94 2.24 -90.62 -0.20 -1.14 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 C -0.15 -1.66 8.70 37.16 0.32 -1.33 16 30 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.11 2.14 7.08 -51.93 -0.37 1.78 16 40 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.12 3.20 6.20 -52.49 -0.33 2.88 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 46 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 47 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -28.83 371.92 -10.23 -39.06 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.60 Total: 7.70 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.16 Total: -27.86 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.72 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.65 Total: -18.60 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.83 -10.23 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779373012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.183 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds