Wall clock time and date at job start Tue Mar 31 2020 12:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47017 * 2 1 4 4 C 1.53000 * 109.46879 * 240.00734 * 2 1 3 5 5 C 1.53000 * 109.47397 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47178 * 59.99148 * 5 4 2 7 7 C 1.52998 * 109.47136 * 300.00784 * 6 5 4 8 8 H 1.09002 * 109.47297 * 299.99436 * 7 6 5 9 9 O 1.45206 * 109.46917 * 179.97438 * 7 6 5 10 10 C 1.34232 * 116.99894 * 89.99736 * 9 7 6 11 11 O 1.20830 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00483 * 180.02562 * 10 9 7 13 13 C 1.50698 * 109.47360 * 180.02562 * 12 10 9 14 14 C 1.37639 * 120.12558 * 264.99418 * 13 12 10 15 15 C 1.38608 * 120.24862 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.49884 * 359.97438 * 15 14 13 17 17 C 1.37598 * 120.25251 * 359.97438 * 16 15 14 18 18 C 1.40688 * 120.13001 * 84.97852 * 13 12 10 19 19 C 1.41396 * 120.24354 * 0.02562 * 18 13 12 20 20 H 1.08000 * 120.00558 * 334.04422 * 19 18 13 21 21 C 1.39945 * 120.00144 * 154.04213 * 19 18 13 22 22 N 1.30827 * 120.00100 * 343.67435 * 21 19 18 23 23 Si 1.86800 * 120.00403 * 163.67140 * 21 19 18 24 24 H 1.48504 * 109.47288 * 89.99789 * 23 21 19 25 25 H 1.48497 * 109.47555 * 210.00241 * 23 21 19 26 26 H 1.48501 * 109.46890 * 330.00120 * 23 21 19 27 27 C 1.52988 * 109.47341 * 120.00329 * 2 1 3 28 28 H 1.09004 * 109.47712 * 299.99771 * 27 2 1 29 29 C 1.53000 * 109.47490 * 60.00059 * 27 2 1 30 30 H 1.09007 * 109.46997 * 299.99329 * 1 2 3 31 31 H 1.09000 * 109.47723 * 59.99463 * 1 2 3 32 32 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46697 * 299.99462 * 4 2 1 34 34 H 1.09001 * 109.47500 * 59.99058 * 4 2 1 35 35 H 1.08998 * 109.47045 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.46827 * 299.99974 * 5 4 2 37 37 H 1.08996 * 109.47339 * 179.97438 * 6 5 4 38 38 H 1.09007 * 109.46955 * 60.00398 * 6 5 4 39 39 H 1.08997 * 109.46846 * 59.99770 * 12 10 9 40 40 H 1.09004 * 109.46605 * 300.00253 * 12 10 9 41 41 H 1.08003 * 119.87375 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.75060 * 179.97438 * 15 14 13 43 43 H 1.08007 * 119.87618 * 179.72159 * 16 15 14 44 44 H 1.07995 * 120.12872 * 179.97438 * 17 16 15 45 45 H 0.97004 * 120.00060 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.47109 * 180.02562 * 29 27 2 47 47 H 1.08998 * 109.46853 * 300.00071 * 29 27 2 48 48 H 1.08998 * 109.47249 * 59.99423 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5699 -0.7206 -1.2498 6 6 4.0805 -1.4415 -0.0006 7 6 3.5705 -0.7203 1.2487 8 1 3.9335 0.3075 1.2486 9 8 4.0547 -1.4049 2.4342 10 6 5.2343 -1.0016 2.9317 11 8 5.8425 -0.1065 2.3941 12 6 5.8009 -1.6658 4.1601 13 6 7.1229 -1.0323 4.5092 14 6 8.2976 -1.5958 4.0654 15 6 9.5150 -1.0149 4.3846 16 6 9.5645 0.1385 5.1526 17 6 8.4027 0.7197 5.6063 18 6 7.1611 0.1376 5.2898 19 6 5.9608 0.7252 5.7515 20 1 5.0403 0.5714 5.2081 21 6 5.9655 1.5062 6.9128 22 7 6.9758 1.4403 7.7413 23 14 4.5293 2.6428 7.2799 24 1 3.5097 1.9114 8.0742 25 1 5.0111 3.8156 8.0529 26 1 3.9252 3.1049 6.0045 27 6 2.0400 -0.7213 1.2491 28 1 1.6768 -0.2075 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -1.7488 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.9332 -1.2347 -2.1396 36 1 3.9329 0.3072 -1.2499 37 1 5.1705 -1.4416 -0.0011 38 1 3.7176 -2.4693 -0.0004 39 1 5.9471 -2.7280 3.9640 40 1 5.1079 -1.5419 4.9923 41 1 8.2707 -2.4939 3.4662 42 1 10.4318 -1.4641 4.0325 43 1 10.5188 0.5801 5.3992 44 1 8.4436 1.6177 6.2047 45 1 6.9789 1.9813 8.5465 46 1 1.8931 -2.6774 2.1392 47 1 0.4401 -2.1638 1.2491 48 1 1.8933 -2.6776 0.3591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779373013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:33 Heat of formation + Delta-G solvation = -102.296342 kcal Electronic energy + Delta-G solvation = -27126.452559 eV Core-core repulsion = 23530.522847 eV Total energy + Delta-G solvation = -3595.929711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40494 -38.88858 -37.49477 -35.55681 -33.64772 -32.76703 -31.88430 -31.13331 -29.48981 -27.64100 -26.86768 -25.82074 -25.05407 -22.58276 -21.87167 -20.95966 -20.47884 -19.28611 -18.56419 -17.19932 -16.99473 -16.16229 -15.71058 -15.48906 -15.23850 -14.70032 -14.51862 -14.21663 -13.88260 -13.70562 -13.49941 -13.10068 -12.70036 -12.67117 -12.59573 -12.32755 -12.08425 -11.80726 -11.70474 -11.61075 -11.58348 -11.19708 -11.14753 -11.02035 -10.97273 -10.83969 -10.73862 -10.57696 -10.46181 -10.41658 -10.20305 -9.78860 -9.59476 -9.50890 -9.40177 -9.17476 -7.35837 -7.33100 -6.76296 -4.37716 2.71394 2.88466 3.02293 3.06258 3.11358 3.25603 3.40820 3.92797 4.50282 4.57053 4.63279 4.71044 4.96669 4.99972 5.16032 5.19238 5.27010 5.40141 5.48439 5.51454 5.55968 5.61470 5.69620 5.76216 5.81392 5.87322 5.90599 5.93499 5.97595 6.00864 6.04736 6.19167 6.21472 6.22961 6.26753 6.30676 6.42254 6.48579 6.50018 6.76178 7.06140 7.09144 7.26798 7.38996 7.61751 7.88816 8.03006 8.10267 8.28193 8.54904 8.62967 8.88304 8.97831 10.17857 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.004077 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.369478 B = 6865.357501 C = 8332.776216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.136 4.136 7 C 0.093 3.907 8 H 0.081 0.919 9 O -0.361 6.361 10 C 0.457 3.543 11 O -0.493 6.493 12 C -0.042 4.042 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.159 4.159 18 C 0.131 3.869 19 C -0.458 4.458 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.082 4.082 28 H 0.077 0.923 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.280 0.720 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 -4.545 -11.863 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.173 4.173 7 C 0.038 3.962 8 H 0.099 0.901 9 O -0.279 6.279 10 C 0.300 3.700 11 O -0.378 6.378 12 C -0.080 4.080 13 C -0.195 4.195 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.418 5.418 23 Si 0.726 3.274 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.100 4.100 28 H 0.095 0.905 29 C -0.205 4.205 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.828 -4.162 -11.817 16.560 hybrid contribution -0.438 0.720 0.211 0.869 sum -11.266 -3.443 -11.606 16.537 Atomic orbital electron populations 1.21860 0.94847 1.02051 1.01637 1.21120 0.95731 0.99508 0.94129 0.91025 1.21676 0.95462 1.01031 0.97292 1.21469 0.95551 1.01053 0.97233 1.21943 1.01272 1.00251 0.93847 1.22578 0.93583 0.97159 0.82898 0.90088 1.86580 1.37953 1.60609 1.42774 1.24443 0.78295 0.81719 0.85537 1.90623 1.59106 1.28675 1.59434 1.19976 0.96971 0.98438 0.92577 1.19054 0.90954 0.99361 1.10089 1.20319 0.92762 0.98028 0.98434 1.20309 0.95722 1.00955 1.08937 1.20697 0.96960 0.96227 0.98408 1.21297 0.91577 1.01270 1.03644 1.17337 0.93182 0.88375 0.88265 1.19480 0.95472 1.26479 1.07306 0.90837 1.25874 0.97022 0.95703 0.95351 1.69816 1.30120 1.33055 1.08787 0.86405 0.81532 0.80046 0.79383 1.19371 1.20004 1.18525 1.21193 0.92687 0.97692 0.98457 0.90456 1.21920 1.00383 0.95625 1.02558 0.92584 0.92742 0.92207 0.91418 0.91967 0.91596 0.91723 0.91434 0.90884 0.89522 0.87580 0.89602 0.89540 0.89475 0.86466 0.90863 0.91760 0.92669 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 2 C -0.09 -0.86 2.49 -90.63 -0.23 -1.08 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.06 4.93 -26.73 -0.13 -1.19 16 5 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 6 C -0.14 -1.75 5.29 -26.73 -0.14 -1.89 16 7 C 0.09 1.38 2.13 -26.71 -0.06 1.32 16 8 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 9 O -0.36 -6.27 9.21 -39.26 -0.36 -6.63 16 10 C 0.46 9.38 7.56 36.00 0.27 9.65 16 11 O -0.49 -11.69 15.25 -18.75 -0.29 -11.98 16 12 C -0.04 -0.86 5.29 -29.04 -0.15 -1.01 16 13 C -0.19 -4.66 4.43 -103.92 -0.46 -5.12 16 14 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 15 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 16 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 17 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 18 C 0.13 3.49 5.56 -106.83 -0.59 2.90 16 19 C -0.46 -12.07 8.14 -37.74 -0.31 -12.38 16 20 H 0.07 1.90 6.68 -52.49 -0.35 1.55 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.79 -20.37 10.97 55.55 0.61 -19.76 16 23 Si 0.90 18.87 29.59 -169.99 -5.03 13.84 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.08 -0.98 2.47 -90.60 -0.22 -1.20 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.15 -1.56 8.00 37.16 0.30 -1.27 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 39 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 40 H 0.11 2.14 7.06 -51.93 -0.37 1.77 16 41 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 44 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 46 H 0.06 0.75 7.68 -51.93 -0.40 0.36 16 47 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 48 H 0.06 0.58 4.81 -51.93 -0.25 0.34 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -28.95 371.97 -10.22 -39.17 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.60 Total: 7.01 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.16 Total: -27.25 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.61 Total: -19.76 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.65 Total: -18.61 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.95 -10.22 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779373013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.127 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds