Wall clock time and date at job start Tue Mar 31 2020 12:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46802 * 2 1 4 4 C 1.53001 * 109.47055 * 239.99427 * 2 1 3 5 5 C 1.53005 * 109.46745 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46968 * 60.00236 * 5 4 2 7 7 C 1.52994 * 109.47280 * 299.99751 * 6 5 4 8 8 H 1.09005 * 109.47114 * 300.00321 * 7 6 5 9 9 O 1.45205 * 109.47418 * 180.02562 * 7 6 5 10 10 C 1.34224 * 116.99544 * 89.99835 * 9 7 6 11 11 O 1.20823 * 120.00337 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99550 * 180.02562 * 10 9 7 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 10 9 14 14 C 1.37636 * 120.13298 * 265.00052 * 13 12 10 15 15 C 1.38610 * 120.24856 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50115 * 0.02562 * 15 14 13 17 17 C 1.37594 * 120.25136 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.12024 * 85.26015 * 13 12 10 19 19 C 1.41391 * 120.24871 * 0.02562 * 18 13 12 20 20 H 1.08005 * 119.99677 * 334.27449 * 19 18 13 21 21 C 1.39944 * 120.00108 * 154.27693 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.65995 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.66543 * 21 19 18 24 24 H 1.48491 * 109.47398 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47083 * 119.99778 * 23 21 19 26 26 H 1.48498 * 109.46937 * 239.99532 * 23 21 19 27 27 C 1.53001 * 109.46984 * 119.99464 * 2 1 3 28 28 H 1.08997 * 109.47192 * 59.99706 * 27 2 1 29 29 C 1.53001 * 109.47195 * 299.99878 * 27 2 1 30 30 H 1.09001 * 109.47121 * 300.00626 * 1 2 3 31 31 H 1.09001 * 109.47108 * 60.00505 * 1 2 3 32 32 H 1.09005 * 109.46818 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46910 * 300.00165 * 4 2 1 34 34 H 1.09001 * 109.47107 * 60.00067 * 4 2 1 35 35 H 1.09001 * 109.46811 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47183 * 300.00330 * 5 4 2 37 37 H 1.08995 * 109.46982 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.47014 * 59.99494 * 6 5 4 39 39 H 1.09008 * 109.46793 * 59.99978 * 12 10 9 40 40 H 1.08995 * 109.47048 * 300.00004 * 12 10 9 41 41 H 1.07995 * 119.87268 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.74858 * 180.02562 * 15 14 13 43 43 H 1.08003 * 119.87397 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.13118 * 179.97438 * 17 16 15 45 45 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.47137 * 300.00502 * 29 27 2 47 47 H 1.09006 * 109.46915 * 60.00157 * 29 27 2 48 48 H 1.09001 * 109.47107 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5701 -0.7208 -1.2494 6 6 4.0805 -1.4416 -0.0001 7 6 3.5705 -0.7203 1.2490 8 1 3.9335 0.3076 1.2487 9 8 4.0554 -1.4040 2.4347 10 6 5.2350 -0.9997 2.9316 11 8 5.8419 -0.1039 2.3940 12 6 5.8022 -1.6631 4.1601 13 6 7.1246 -1.0294 4.5079 14 6 8.2990 -1.5931 4.0637 15 6 9.5165 -1.0120 4.3817 16 6 9.5666 0.1413 5.1498 17 6 8.4052 0.7222 5.6048 18 6 7.1635 0.1378 5.2926 19 6 5.9638 0.7225 5.7597 20 1 5.0413 0.5664 5.2201 21 6 5.9717 1.5033 6.9209 22 7 6.9857 1.4396 7.7451 23 14 4.5344 2.6365 7.2943 24 1 3.5227 2.5255 6.2131 25 1 3.9204 2.2470 8.5892 26 1 5.0177 4.0381 7.3774 27 6 2.0400 -0.7211 1.2493 28 1 1.6766 -1.7488 1.2494 29 6 1.5300 0.0002 2.4985 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.9334 -1.2351 -2.1391 36 1 3.9330 0.3069 -1.2497 37 1 5.1705 -1.4416 -0.0005 38 1 3.7175 -2.4694 0.0002 39 1 5.9490 -2.7254 3.9644 40 1 5.1095 -1.5394 4.9925 41 1 8.2717 -2.4916 3.4651 42 1 10.4331 -1.4609 4.0286 43 1 10.5209 0.5858 5.3913 44 1 8.4465 1.6202 6.2032 45 1 6.9910 1.9806 8.5502 46 1 1.8933 1.0279 2.4984 47 1 0.4399 0.0002 2.4985 48 1 1.8937 -0.5133 3.3885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779373015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:41 Heat of formation + Delta-G solvation = -106.584468 kcal Electronic energy + Delta-G solvation = -27162.903281 eV Core-core repulsion = 23566.787622 eV Total energy + Delta-G solvation = -3596.115658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31343 -38.71030 -37.47386 -35.54905 -33.65052 -33.17064 -31.93395 -31.20752 -29.49029 -27.50700 -26.84986 -25.63506 -25.02891 -22.37087 -21.20032 -20.95670 -20.49536 -19.95673 -19.19626 -17.19736 -16.98979 -16.00321 -15.67193 -15.28234 -14.87935 -14.72158 -14.50278 -14.28518 -14.11274 -13.67428 -13.45687 -13.20798 -12.74019 -12.62533 -12.47096 -12.16019 -11.94841 -11.83712 -11.73224 -11.67562 -11.58050 -11.21709 -11.15435 -11.02095 -10.97914 -10.95302 -10.72261 -10.61954 -10.46037 -10.40636 -10.34332 -9.78166 -9.58534 -9.50727 -9.39290 -9.18805 -7.35975 -7.33376 -6.76550 -4.37825 2.70644 2.87776 3.02382 3.06832 3.12304 3.24862 3.40445 3.92613 4.51132 4.57888 4.62856 4.68937 4.89982 4.98571 5.17213 5.25232 5.34402 5.40985 5.43294 5.48811 5.58818 5.65431 5.68626 5.77812 5.83679 5.86713 5.91948 5.97019 5.99134 6.02344 6.07285 6.14990 6.18635 6.21058 6.26683 6.40358 6.41097 6.43993 6.49099 6.76216 7.06178 7.09565 7.26754 7.38867 7.61677 7.88795 8.03086 8.10284 8.28052 8.54939 8.63016 8.88248 8.97725 10.17646 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.004263 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.480787 B = 6566.500401 C = 8217.949743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.135 4.135 7 C 0.093 3.907 8 H 0.082 0.918 9 O -0.361 6.361 10 C 0.458 3.542 11 O -0.493 6.493 12 C -0.043 4.043 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.159 4.159 18 C 0.131 3.869 19 C -0.457 4.457 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.272 1.272 27 C -0.079 4.079 28 H 0.078 0.922 29 C -0.152 4.152 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.280 0.720 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -3.850 -11.507 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.172 4.172 7 C 0.037 3.963 8 H 0.100 0.900 9 O -0.280 6.280 10 C 0.301 3.699 11 O -0.378 6.378 12 C -0.080 4.080 13 C -0.194 4.194 14 C -0.096 4.096 15 C -0.259 4.259 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.418 5.418 23 Si 0.726 3.274 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.097 4.097 28 H 0.097 0.903 29 C -0.209 4.209 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.845 -3.468 -11.462 16.156 hybrid contribution -0.422 0.661 0.188 0.806 sum -11.268 -2.807 -11.275 16.185 Atomic orbital electron populations 1.21861 0.94833 1.01879 1.01809 1.21155 0.95751 0.99758 0.93826 0.90933 1.21645 0.95459 1.00790 0.97428 1.21476 0.95543 1.01077 0.97245 1.21922 1.01408 0.99984 0.93910 1.22624 0.93587 0.97278 0.82772 0.90006 1.86568 1.37958 1.60629 1.42796 1.24424 0.78253 0.81720 0.85532 1.90619 1.59147 1.28635 1.59427 1.19983 0.96968 0.98455 0.92588 1.19052 0.90944 0.99414 1.10032 1.20317 0.92762 0.98014 0.98459 1.20310 0.95722 1.00980 1.08913 1.20695 0.96963 0.96214 0.98410 1.21301 0.91589 1.01251 1.03656 1.17350 0.93199 0.88378 0.88264 1.19521 0.95418 1.26427 1.07304 0.90759 1.25875 0.97024 0.95698 0.95370 1.69821 1.30039 1.32939 1.08956 0.86353 0.81678 0.80297 0.79030 1.18404 1.19883 1.19670 1.21213 0.92622 1.00646 0.95258 0.90340 1.21882 1.00686 1.00613 0.97708 0.92137 0.92741 0.92649 0.91787 0.91844 0.91556 0.91666 0.91313 0.91230 0.89531 0.87572 0.89603 0.89542 0.89480 0.86463 0.90920 0.92739 0.92309 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 2 C -0.09 -0.86 2.25 -90.62 -0.20 -1.06 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 6 C -0.13 -1.74 5.56 -26.73 -0.15 -1.89 16 7 C 0.09 1.38 1.88 -26.71 -0.05 1.33 16 8 H 0.08 1.40 7.15 -51.93 -0.37 1.03 16 9 O -0.36 -6.30 9.21 -39.24 -0.36 -6.66 16 10 C 0.46 9.38 7.58 36.01 0.27 9.65 16 11 O -0.49 -11.66 15.25 -18.75 -0.29 -11.95 16 12 C -0.04 -0.87 5.30 -29.03 -0.15 -1.02 16 13 C -0.19 -4.65 4.43 -103.91 -0.46 -5.11 16 14 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 15 C -0.24 -5.55 10.05 -39.29 -0.39 -5.95 16 16 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 17 C -0.16 -4.22 8.68 -38.87 -0.34 -4.56 16 18 C 0.13 3.48 5.56 -106.82 -0.59 2.88 16 19 C -0.46 -12.01 8.15 -37.74 -0.31 -12.32 16 20 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.87 16 22 N -0.79 -20.32 10.97 55.55 0.61 -19.71 16 23 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.08 -0.95 2.00 -90.59 -0.18 -1.13 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 C -0.15 -1.91 8.70 37.16 0.32 -1.59 16 30 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.49 8.05 -51.92 -0.42 1.07 16 40 H 0.11 2.14 7.04 -51.93 -0.37 1.77 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 48 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -28.85 379.01 -10.38 -39.24 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.95 Total: 7.02 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -3.07 Total: -27.43 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.65 Total: -18.61 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.85 -10.38 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779373015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.347 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds