Wall clock time and date at job start Tue Mar 31 2020 11:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 H 1.08997 * 109.47154 * 55.00066 * 3 2 1 5 5 C 1.52995 * 109.47129 * 295.00166 * 3 2 1 6 6 C 1.52998 * 109.47340 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47326 * 59.99675 * 6 5 3 8 8 C 1.53000 * 109.46994 * 300.00129 * 7 6 5 9 9 C 1.52997 * 109.47174 * 175.00064 * 3 2 1 10 10 H 1.08997 * 109.47078 * 59.99956 * 9 3 2 11 11 C 1.50699 * 109.47301 * 300.00144 * 9 3 2 12 12 O 1.20831 * 119.99799 * 359.97438 * 11 9 3 13 13 O 1.34226 * 120.00195 * 179.97438 * 11 9 3 14 14 C 1.45206 * 117.00081 * 180.02562 * 13 11 9 15 15 C 1.50693 * 109.47325 * 180.02562 * 14 13 11 16 16 C 1.38633 * 119.74998 * 269.72863 * 15 14 13 17 17 C 1.37621 * 120.24877 * 179.72023 * 16 15 14 18 18 C 1.40709 * 119.74591 * 0.56765 * 17 16 15 19 19 C 1.41396 * 120.24656 * 179.68241 * 18 17 16 20 20 H 1.08000 * 119.99752 * 24.40366 * 19 18 17 21 21 C 1.39948 * 119.99810 * 204.40327 * 19 18 17 22 22 N 1.30822 * 120.00330 * 17.85072 * 21 19 18 23 23 Si 1.86798 * 119.99695 * 197.84794 * 21 19 18 24 24 H 1.48504 * 109.47252 * 60.00098 * 23 21 19 25 25 H 1.48496 * 109.47199 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47141 * 300.00209 * 23 21 19 27 27 C 1.40722 * 119.51165 * 359.70491 * 18 17 16 28 28 C 1.37615 * 119.74434 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.47145 * 299.99811 * 1 2 3 30 30 H 1.09000 * 109.47134 * 60.00032 * 1 2 3 31 31 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46914 * 239.99625 * 2 1 3 33 33 H 1.09000 * 109.47134 * 119.99968 * 2 1 3 34 34 H 1.09001 * 109.47569 * 59.99877 * 5 3 2 35 35 H 1.09007 * 109.47091 * 299.99954 * 5 3 2 36 36 H 1.09007 * 109.46733 * 299.99858 * 6 5 3 37 37 H 1.09004 * 109.47693 * 180.02562 * 6 5 3 38 38 H 1.08997 * 109.47078 * 60.00308 * 7 6 5 39 39 H 1.09003 * 109.47069 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47076 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.47354 * 300.00010 * 8 7 6 42 42 H 1.09007 * 109.46653 * 300.00003 * 14 13 11 43 43 H 1.08998 * 109.47275 * 59.99436 * 14 13 11 44 44 H 1.08003 * 119.87323 * 359.97438 * 16 15 14 45 45 H 1.08004 * 120.12720 * 180.27845 * 17 16 15 46 46 H 0.96996 * 119.99826 * 180.02562 * 22 21 19 47 47 H 1.07996 * 120.13148 * 180.02562 * 27 18 17 48 48 H 1.08002 * 119.88042 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1458 3.5688 -1.3076 7 6 3.6706 3.5702 -1.1822 8 6 4.0753 2.8862 0.1252 9 6 3.5648 1.4443 0.1257 10 1 3.9994 0.9053 -0.7161 11 6 3.9636 0.7706 1.4134 12 8 3.1151 0.3341 2.1547 13 8 5.2612 0.6553 1.7367 14 6 5.5716 -0.0057 2.9918 15 6 7.0657 -0.0412 3.1847 16 6 7.7955 -1.1193 2.7080 17 6 9.1611 -1.1596 2.8735 18 6 9.8150 -0.1068 3.5399 19 6 11.2168 -0.1406 3.7217 20 1 11.8344 -0.7198 3.0512 21 6 11.8038 0.5764 4.7704 22 7 11.0713 0.9840 5.7748 23 14 13.6334 0.9514 4.7362 24 1 13.9513 1.7562 3.5292 25 1 14.0049 1.7162 5.9536 26 1 14.3989 -0.3207 4.6985 27 6 9.0634 0.9797 4.0246 28 6 7.6995 1.0016 3.8429 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3969 35 1 2.0699 1.5875 -2.1492 36 1 1.7115 4.1081 -0.4657 37 1 1.8570 4.0564 -2.2388 38 1 4.1049 3.0309 -2.0240 39 1 4.0342 4.5977 -1.1820 40 1 5.1617 2.8867 0.2144 41 1 3.6411 3.4254 0.9670 42 1 5.1124 0.5426 3.8144 43 1 5.1831 -1.0238 2.9721 44 1 7.2908 -1.9286 2.2013 45 1 9.7282 -1.9983 2.4974 46 1 11.4782 1.4812 6.5014 47 1 9.5550 1.7932 4.5372 48 1 7.1206 1.8346 4.2136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796323064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:50 Heat of formation + Delta-G solvation = -109.462540 kcal Electronic energy + Delta-G solvation = -26085.821432 eV Core-core repulsion = 22489.580971 eV Total energy + Delta-G solvation = -3596.240461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66335 -38.58009 -37.57019 -36.00992 -34.02000 -33.81068 -31.61784 -30.63229 -29.36756 -29.19063 -27.22525 -24.56786 -23.90388 -23.32128 -21.09315 -20.87672 -20.73190 -20.03488 -19.78054 -17.40263 -17.29855 -16.48346 -15.97940 -15.36595 -15.14413 -14.89426 -14.37542 -14.25280 -14.02107 -13.87646 -13.42168 -13.37255 -13.19247 -12.77455 -12.61432 -12.38035 -12.18608 -12.02786 -11.76407 -11.68170 -11.55257 -11.32684 -11.28669 -11.16450 -11.13723 -10.89805 -10.76136 -10.63309 -10.58696 -10.54735 -10.14577 -10.08910 -9.77169 -9.60253 -9.45974 -9.20949 -7.56203 -7.45527 -6.87121 -4.46374 2.46300 2.48199 2.97374 3.00481 3.02169 3.05301 3.41139 3.85352 4.39942 4.46109 4.50653 4.66136 4.87476 4.97263 5.10913 5.16879 5.21304 5.24145 5.27359 5.37465 5.51483 5.56377 5.61711 5.62825 5.68760 5.73785 5.81506 5.87111 5.88918 5.92163 5.99145 6.02351 6.09581 6.13889 6.16445 6.25756 6.31431 6.33466 6.37533 6.86490 6.95772 6.97845 7.18401 7.26615 7.51555 7.74224 7.95555 8.01161 8.13190 8.19236 8.53677 8.78494 8.86814 10.06971 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.002471 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.758816 B =11327.483457 C =11960.503350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.069 4.069 4 H 0.077 0.923 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.077 4.077 10 H 0.104 0.896 11 C 0.458 3.542 12 O -0.515 6.515 13 O -0.349 6.349 14 C 0.135 3.865 15 C -0.235 4.235 16 C -0.064 4.064 17 C -0.231 4.231 18 C 0.119 3.881 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.076 3.924 22 N -0.786 5.786 23 Si 0.910 3.090 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.170 4.170 28 C -0.075 4.075 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.283 0.717 47 H 0.120 0.880 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 4.188 -11.196 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.087 4.087 4 H 0.096 0.904 5 C -0.152 4.152 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.096 4.096 10 H 0.122 0.878 11 C 0.302 3.698 12 O -0.405 6.405 13 O -0.266 6.266 14 C 0.063 3.937 15 C -0.236 4.236 16 C -0.082 4.082 17 C -0.250 4.250 18 C 0.116 3.884 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.143 4.143 22 N -0.411 5.411 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.190 4.190 28 C -0.094 4.094 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.742 4.158 -10.692 18.679 hybrid contribution 0.796 0.039 0.291 0.849 sum -13.945 4.198 -10.400 17.896 Atomic orbital electron populations 1.21751 0.96011 1.01268 1.01414 1.21857 0.96039 0.96160 1.03247 1.21033 0.92070 0.97111 0.98494 0.90448 1.21647 1.00897 0.95545 0.97073 1.21588 0.95868 0.96803 1.01754 1.21532 0.95813 1.00744 0.97377 1.21516 1.02166 0.92746 0.98547 1.21123 0.97305 0.97384 0.93779 0.87784 1.23677 0.81517 0.76701 0.87923 1.90557 1.51694 1.46381 1.51907 1.86707 1.26126 1.71347 1.42378 1.21694 0.94632 0.95535 0.81789 1.18665 0.91488 1.00134 1.13304 1.20380 0.94143 0.96150 0.97553 1.20944 0.93313 0.99863 1.10882 1.17679 0.93225 0.89412 0.88082 1.19641 0.92394 1.25514 1.11051 0.90212 1.25969 1.00918 0.93353 0.94105 1.69814 1.38420 1.27046 1.05817 0.86329 0.81916 0.79605 0.78701 1.18679 1.20239 1.18890 1.21296 0.92342 0.99719 1.05611 1.20533 0.94981 0.95938 0.97950 0.92823 0.92995 0.93090 0.92658 0.89337 0.91357 0.91816 0.91939 0.91967 0.91615 0.91502 0.90063 0.91508 0.92135 0.92212 0.89361 0.88738 0.90581 0.86263 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C -0.14 -1.49 5.14 -26.73 -0.14 -1.63 16 3 C -0.07 -0.72 1.36 -90.62 -0.12 -0.84 16 4 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 5 C -0.11 -0.94 4.96 -26.73 -0.13 -1.07 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 8 C -0.11 -1.21 5.13 -26.76 -0.14 -1.35 16 9 C -0.08 -0.91 2.16 -91.80 -0.20 -1.11 16 10 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 11 C 0.46 7.23 6.93 36.01 0.25 7.48 16 12 O -0.52 -9.02 13.42 -18.75 -0.25 -9.27 16 13 O -0.35 -6.35 10.11 -39.25 -0.40 -6.75 16 14 C 0.14 2.61 5.58 36.00 0.20 2.81 16 15 C -0.23 -5.21 5.54 -104.33 -0.58 -5.78 16 16 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 17 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 18 C 0.12 3.12 5.58 -106.82 -0.60 2.52 16 19 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 20 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 21 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.79 -19.85 10.95 55.55 0.61 -19.24 16 23 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 28 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.21 5.42 -51.93 -0.28 0.93 16 34 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.14 8.07 -51.92 -0.42 0.72 16 43 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 44 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 45 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 46 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 47 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 48 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -27.36 380.18 -10.68 -38.04 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.01 Total: 5.73 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.33 Total: -27.35 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.65 Total: -16.01 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.36 -10.68 -38.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796323064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.425 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds