Wall clock time and date at job start Tue Mar 31 2020 11:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46865 * 2 1 4 4 H 1.08993 * 109.47449 * 305.00623 * 3 2 1 5 5 C 1.53005 * 109.46821 * 65.00721 * 3 2 1 6 6 C 1.52997 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47245 * 299.99674 * 6 5 3 8 8 C 1.52998 * 109.47287 * 60.00049 * 7 6 5 9 9 C 1.52997 * 109.46874 * 184.99764 * 3 2 1 10 10 H 1.09001 * 109.47855 * 300.00950 * 9 3 2 11 11 C 1.50707 * 109.46885 * 60.00534 * 9 3 2 12 12 O 1.20830 * 119.99624 * 359.97438 * 11 9 3 13 13 O 1.34224 * 120.00253 * 179.97438 * 11 9 3 14 14 C 1.45200 * 117.00174 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.47176 * 179.97438 * 14 13 11 16 16 C 1.38637 * 119.74820 * 89.99989 * 15 14 13 17 17 C 1.37616 * 120.24767 * 180.02562 * 16 15 14 18 18 C 1.40717 * 119.74725 * 359.97438 * 17 16 15 19 19 C 1.41392 * 120.24251 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99499 * 155.58147 * 19 18 17 21 21 C 1.39936 * 120.00495 * 335.31090 * 19 18 17 22 22 N 1.30828 * 119.99619 * 342.56815 * 21 19 18 23 23 Si 1.86800 * 120.00297 * 162.56923 * 21 19 18 24 24 H 1.48500 * 109.47096 * 59.99987 * 23 21 19 25 25 H 1.48502 * 109.47143 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47209 * 299.99504 * 23 21 19 27 27 C 1.40715 * 119.50976 * 0.28023 * 18 17 16 28 28 C 1.37623 * 119.74263 * 359.41769 * 27 18 17 29 29 H 1.09001 * 109.47655 * 59.99426 * 1 2 3 30 30 H 1.09002 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47006 * 299.99710 * 1 2 3 32 32 H 1.08999 * 109.46448 * 240.00530 * 2 1 3 33 33 H 1.08996 * 109.47050 * 120.00248 * 2 1 3 34 34 H 1.09007 * 109.46678 * 299.99513 * 5 3 2 35 35 H 1.08995 * 109.47447 * 59.99264 * 5 3 2 36 36 H 1.09001 * 109.47408 * 60.00266 * 6 5 3 37 37 H 1.09004 * 109.47175 * 179.97438 * 6 5 3 38 38 H 1.09008 * 109.47649 * 180.02562 * 7 6 5 39 39 H 1.09007 * 109.47443 * 300.00124 * 7 6 5 40 40 H 1.09005 * 109.47528 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47352 * 60.00088 * 8 7 6 42 42 H 1.09000 * 109.46926 * 60.00457 * 14 13 11 43 43 H 1.08997 * 109.47182 * 299.99700 * 14 13 11 44 44 H 1.08003 * 119.87289 * 359.97438 * 16 15 14 45 45 H 1.08007 * 120.12366 * 180.02562 * 17 16 15 46 46 H 0.97006 * 119.99935 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.12530 * 179.70014 * 27 18 17 48 48 H 1.08001 * 119.87303 * 180.27674 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1265 1.3075 6 6 2.1458 3.5688 1.3078 7 6 3.6705 3.5701 1.1823 8 6 4.0753 2.8862 -0.1251 9 6 3.5648 1.4444 -0.1257 10 1 3.9995 0.9052 0.7160 11 6 3.9635 0.7707 -1.4135 12 8 3.1150 0.3335 -2.1544 13 8 5.2610 0.6563 -1.7374 14 6 5.5714 -0.0046 -2.9925 15 6 7.0655 -0.0391 -3.1860 16 6 7.7969 -1.1139 -2.7045 17 6 9.1618 -1.1557 -2.8750 18 6 9.8147 -0.1023 -3.5416 19 6 11.2165 -0.1348 -3.7231 20 1 11.6691 0.4187 -4.5326 21 6 12.0181 -0.8794 -2.8506 22 7 11.5451 -1.2598 -1.6916 23 14 13.7634 -1.3301 -3.3405 24 1 14.5466 -0.0910 -3.5778 25 1 14.3969 -2.1142 -2.2500 26 1 13.7345 -2.1431 -4.5828 27 6 9.0629 0.9861 -4.0213 28 6 7.6981 1.0038 -3.8449 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5489 2.1251 1.3971 35 1 2.0699 1.5874 2.1492 36 1 1.7114 4.1082 0.4660 37 1 1.8571 4.0562 2.2390 38 1 4.0343 4.5977 1.1829 39 1 4.1049 3.0308 2.0241 40 1 5.1617 2.8867 -0.2144 41 1 3.6410 3.4255 -0.9669 42 1 5.1114 0.5433 -3.8149 43 1 5.1837 -1.0231 -2.9724 44 1 7.2936 -1.9210 -2.1929 45 1 9.7296 -1.9942 -2.4995 46 1 12.1008 -1.7756 -1.0866 47 1 9.5544 1.8021 -4.5300 48 1 7.1184 1.8359 -4.2162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796323065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:55 Heat of formation + Delta-G solvation = -109.359955 kcal Electronic energy + Delta-G solvation = -26128.616314 eV Core-core repulsion = 22532.380301 eV Total energy + Delta-G solvation = -3596.236013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.64748 -38.56574 -37.56721 -35.99654 -34.00641 -33.80239 -31.60119 -30.62611 -29.36833 -29.17242 -27.22110 -24.55570 -23.88748 -23.31353 -21.09266 -20.86189 -20.71209 -20.03365 -19.76360 -17.39671 -17.28815 -16.46856 -15.96406 -15.38895 -15.10726 -14.87710 -14.36321 -14.22907 -14.01539 -13.88549 -13.40829 -13.36497 -13.16379 -12.75959 -12.62802 -12.31977 -12.15080 -12.02215 -11.74618 -11.73019 -11.65797 -11.32491 -11.21570 -11.14236 -11.00361 -10.88183 -10.82826 -10.72139 -10.54854 -10.44507 -10.12736 -10.07518 -9.80631 -9.57540 -9.46172 -9.21714 -7.56127 -7.44599 -6.86121 -4.46553 2.47262 2.49478 2.97434 3.00503 3.02272 3.05447 3.41971 3.85588 4.41805 4.47357 4.51790 4.68005 4.89358 4.99193 5.12587 5.18689 5.23292 5.26168 5.29059 5.39448 5.53048 5.58174 5.62088 5.64280 5.68131 5.74203 5.83516 5.88978 5.90514 5.93710 6.00824 6.03739 6.09633 6.15512 6.18317 6.25433 6.31329 6.35169 6.39167 6.86675 6.97076 6.98050 7.18503 7.26767 7.51665 7.74266 7.95599 8.01228 8.14762 8.19426 8.53914 8.78625 8.86912 10.07576 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.002499 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.133427 B =11200.613231 C =11574.057990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.068 4.068 4 H 0.077 0.923 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.077 4.077 10 H 0.105 0.895 11 C 0.459 3.541 12 O -0.516 6.516 13 O -0.348 6.348 14 C 0.136 3.864 15 C -0.234 4.234 16 C -0.076 4.076 17 C -0.170 4.170 18 C 0.118 3.882 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.786 5.786 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.230 4.230 28 C -0.064 4.064 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.283 0.717 47 H 0.094 0.906 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 5.062 6.808 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.087 4.087 4 H 0.095 0.905 5 C -0.152 4.152 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.096 4.096 10 H 0.123 0.877 11 C 0.302 3.698 12 O -0.406 6.406 13 O -0.265 6.265 14 C 0.064 3.936 15 C -0.236 4.236 16 C -0.095 4.095 17 C -0.189 4.189 18 C 0.116 3.884 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.735 3.265 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.249 4.249 28 C -0.083 4.083 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.219 4.794 6.782 17.338 hybrid contribution 0.808 -0.300 -0.187 0.882 sum -14.411 4.494 6.594 16.473 Atomic orbital electron populations 1.21751 0.96023 1.01257 1.01395 1.21861 0.96018 0.96170 1.03279 1.21032 0.92065 0.97100 0.98470 0.90472 1.21650 1.00881 0.95554 0.97098 1.21583 0.95872 0.96796 1.01731 1.21533 0.95796 1.00747 0.97414 1.21512 1.02187 0.92733 0.98515 1.21129 0.97292 0.97399 0.93822 0.87740 1.23683 0.81510 0.76668 0.87908 1.90551 1.51696 1.46426 1.51968 1.86724 1.26111 1.71281 1.42339 1.21704 0.94596 0.95569 0.81780 1.18689 0.91486 1.00238 1.13159 1.20536 0.94510 0.96403 0.98013 1.21294 0.92303 1.00031 1.05275 1.17676 0.93136 0.89368 0.88262 1.19639 0.91632 1.25530 1.11806 0.90226 1.25965 1.01136 0.93583 0.93698 1.69823 1.38390 1.27092 1.05744 0.86325 0.81212 0.79600 0.79388 1.18899 1.20238 1.18706 1.20967 0.93242 0.99575 1.11153 1.20384 0.94461 0.95647 0.97758 0.92838 0.93095 0.93005 0.89333 0.92634 0.91365 0.91795 0.91960 0.91972 0.91507 0.91586 0.90047 0.91550 0.92230 0.92168 0.89378 0.86251 0.90591 0.88743 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.14 -1.53 5.14 -26.73 -0.14 -1.66 16 3 C -0.07 -0.73 1.36 -90.62 -0.12 -0.85 16 4 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 5 C -0.11 -0.97 4.96 -26.73 -0.13 -1.10 16 6 C -0.12 -0.98 5.92 -26.74 -0.16 -1.13 16 7 C -0.12 -1.04 5.92 -26.74 -0.16 -1.20 16 8 C -0.11 -1.25 5.13 -26.76 -0.14 -1.38 16 9 C -0.08 -0.94 2.16 -91.80 -0.20 -1.14 16 10 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 11 C 0.46 7.36 6.94 36.01 0.25 7.61 16 12 O -0.52 -9.08 13.42 -18.75 -0.25 -9.33 16 13 O -0.35 -6.47 10.10 -39.24 -0.40 -6.87 16 14 C 0.14 2.61 5.58 36.01 0.20 2.81 16 15 C -0.23 -5.20 5.54 -104.33 -0.58 -5.78 16 16 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 17 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 18 C 0.12 3.11 5.57 -106.83 -0.60 2.51 16 19 C -0.46 -11.86 9.05 -37.75 -0.34 -12.20 16 20 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 21 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 22 N -0.79 -19.87 10.95 55.55 0.61 -19.26 16 23 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 27 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 28 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.42 6.57 -51.92 -0.34 0.08 16 32 H 0.09 1.23 5.42 -51.93 -0.28 0.95 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 6.57 -51.92 -0.34 0.18 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 43 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 46 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 47 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 48 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -27.40 380.18 -10.68 -38.08 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.01 Total: 5.98 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.33 Total: -27.45 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.65 Total: -16.20 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.40 -10.68 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796323065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.275 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds