Wall clock time and date at job start Tue Mar 31 2020 11:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 H 1.09005 * 109.47241 * 55.00046 * 3 2 1 5 5 C 1.53000 * 109.47049 * 295.00386 * 3 2 1 6 6 C 1.53008 * 109.47029 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46962 * 60.00028 * 6 5 3 8 8 C 1.53000 * 109.47226 * 299.99851 * 7 6 5 9 9 C 1.53000 * 109.47470 * 175.00399 * 3 2 1 10 10 H 1.09009 * 109.46729 * 300.00065 * 9 3 2 11 11 C 1.50696 * 109.47276 * 59.99935 * 9 3 2 12 12 O 1.20826 * 120.00110 * 359.97438 * 11 9 3 13 13 O 1.34229 * 120.00078 * 180.02562 * 11 9 3 14 14 C 1.45206 * 116.99751 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.46901 * 179.97438 * 14 13 11 16 16 C 1.38636 * 119.75076 * 89.99891 * 15 14 13 17 17 C 1.37611 * 120.25151 * 180.02562 * 16 15 14 18 18 C 1.40722 * 119.74546 * 359.97438 * 17 16 15 19 19 C 1.41393 * 120.24478 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00196 * 335.04437 * 19 18 17 21 21 C 1.39943 * 119.99706 * 155.04512 * 19 18 17 22 22 N 1.30827 * 120.00209 * 334.23259 * 21 19 18 23 23 Si 1.86803 * 119.99937 * 154.23463 * 21 19 18 24 24 H 1.48503 * 109.47132 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46928 * 239.99918 * 23 21 19 26 26 H 1.48489 * 109.47311 * 120.00113 * 23 21 19 27 27 C 1.40719 * 119.50978 * 0.27869 * 18 17 16 28 28 C 1.37624 * 119.74279 * 359.46526 * 27 18 17 29 29 H 1.08990 * 109.47390 * 59.99946 * 1 2 3 30 30 H 1.09000 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46698 * 299.99750 * 1 2 3 32 32 H 1.09003 * 109.46936 * 239.99767 * 2 1 3 33 33 H 1.08999 * 109.47510 * 120.00318 * 2 1 3 34 34 H 1.08990 * 109.47089 * 60.00049 * 5 3 2 35 35 H 1.08995 * 109.47208 * 299.99542 * 5 3 2 36 36 H 1.08995 * 109.46977 * 299.99960 * 6 5 3 37 37 H 1.09001 * 109.47015 * 179.97438 * 6 5 3 38 38 H 1.08994 * 109.47076 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.46975 * 60.00075 * 7 6 5 40 40 H 1.08998 * 109.46704 * 300.00360 * 8 7 6 41 41 H 1.08990 * 109.47089 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47452 * 59.99716 * 14 13 11 43 43 H 1.08999 * 109.46688 * 299.98989 * 14 13 11 44 44 H 1.08002 * 119.87641 * 359.97438 * 16 15 14 45 45 H 1.07997 * 120.13362 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99756 * 354.23951 * 22 21 19 47 47 H 1.08001 * 120.12862 * 179.70537 * 27 18 17 48 48 H 1.07991 * 119.87497 * 180.23089 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1447 3.5693 -1.3070 7 6 3.6695 3.5716 -1.1811 8 6 4.0744 2.8875 0.1262 9 6 3.5648 1.4443 0.1256 10 1 3.8532 0.9569 1.0571 11 6 4.1657 0.6991 -1.0382 12 8 3.4480 0.2157 -1.8815 13 8 5.4982 0.5716 -1.1377 14 6 6.0067 -0.1584 -2.2853 15 6 7.5121 -0.1980 -2.2286 16 6 8.1487 -1.2408 -1.5733 17 6 9.5228 -1.2869 -1.5148 18 6 10.2821 -0.2706 -2.1238 19 6 11.6945 -0.3078 -2.0706 20 1 12.1910 -0.8372 -1.2708 21 6 12.4491 0.3414 -3.0542 22 7 11.9419 0.5383 -4.2440 23 14 14.1805 0.9269 -2.6684 24 1 14.5166 0.5860 -1.2627 25 1 14.2579 2.3985 -2.8524 26 1 15.1431 0.2624 -3.5831 27 6 9.6251 0.7859 -2.7815 28 6 8.2500 0.8087 -2.8320 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5489 2.1252 -1.3968 35 1 2.0698 1.5876 -2.1491 36 1 1.7097 4.1080 -0.4652 37 1 1.8566 4.0565 -2.2386 38 1 4.0325 4.5993 -1.1814 39 1 4.1044 3.0328 -2.0230 40 1 3.6394 3.4263 0.9680 41 1 5.1606 2.8888 0.2157 42 1 5.6910 0.3399 -3.2019 43 1 5.6154 -1.1756 -2.2713 44 1 7.5640 -2.0195 -1.1063 45 1 10.0167 -2.0999 -1.0035 46 1 11.0772 0.1619 -4.4710 47 1 10.1979 1.5736 -3.2481 48 1 7.7437 1.6165 -3.3394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796323068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:01 Heat of formation + Delta-G solvation = -110.587875 kcal Electronic energy + Delta-G solvation = -26540.920540 eV Core-core repulsion = 22944.631281 eV Total energy + Delta-G solvation = -3596.289259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96002 -38.46909 -37.65330 -35.94065 -34.18089 -33.93237 -31.55335 -30.52254 -29.50376 -29.13195 -27.04951 -24.50272 -23.89632 -23.28927 -21.38225 -21.21953 -20.80150 -20.19030 -19.52518 -18.01737 -17.11868 -16.33668 -15.94733 -15.53523 -14.91643 -14.63665 -14.42399 -14.20675 -14.08525 -13.92507 -13.76435 -13.41948 -12.93992 -12.79198 -12.72757 -12.32858 -12.18805 -12.04848 -11.97247 -11.89884 -11.63934 -11.50771 -11.23486 -11.14203 -11.10334 -10.89623 -10.71066 -10.59238 -10.48305 -10.18249 -10.14839 -10.01767 -9.69142 -9.65850 -9.55079 -9.06807 -7.79247 -7.66317 -7.29054 -4.55966 2.39775 2.46080 2.80710 3.07307 3.11041 3.29422 3.38723 3.93859 4.39410 4.45047 4.54143 4.64066 4.94099 4.98468 5.10175 5.15667 5.23111 5.31291 5.34321 5.39497 5.44784 5.53244 5.57972 5.60283 5.63850 5.69661 5.78182 5.85944 5.89633 6.00404 6.01986 6.08500 6.11113 6.11962 6.13205 6.15911 6.26059 6.33732 6.42263 6.68572 6.91974 6.97197 7.04243 7.29108 7.55406 7.66556 7.71681 7.84249 8.08449 8.11495 8.20626 8.64653 8.77184 9.93473 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.002605 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.140593 B =10744.296715 C =11234.423916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C -0.066 4.066 4 H 0.077 0.923 5 C -0.131 4.131 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.111 4.111 9 C -0.080 4.080 10 H 0.103 0.897 11 C 0.463 3.537 12 O -0.512 6.512 13 O -0.350 6.350 14 C 0.137 3.863 15 C -0.246 4.246 16 C -0.054 4.054 17 C -0.232 4.232 18 C 0.103 3.897 19 C -0.513 4.513 20 H 0.078 0.922 21 C 0.038 3.962 22 N -0.790 5.790 23 Si 1.070 2.930 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.277 1.277 27 C -0.225 4.225 28 C -0.054 4.054 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.301 0.699 47 H 0.107 0.893 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 4.191 7.035 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.084 4.084 4 H 0.095 0.905 5 C -0.168 4.168 6 C -0.157 4.157 7 C -0.162 4.162 8 C -0.148 4.148 9 C -0.099 4.099 10 H 0.121 0.879 11 C 0.307 3.693 12 O -0.402 6.402 13 O -0.267 6.267 14 C 0.065 3.935 15 C -0.247 4.247 16 C -0.072 4.072 17 C -0.252 4.252 18 C 0.100 3.900 19 C -0.541 4.541 20 H 0.096 0.904 21 C -0.185 4.185 22 N -0.413 5.413 23 Si 0.894 3.106 24 H -0.200 1.200 25 H -0.198 1.198 26 H -0.203 1.203 27 C -0.245 4.245 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.125 0.875 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.212 4.850 6.062 17.079 hybrid contribution -1.378 -0.947 0.559 1.763 sum -16.590 3.903 6.620 18.284 Atomic orbital electron populations 1.21767 0.96073 1.01264 1.01450 1.21859 0.95842 0.96279 1.03382 1.21021 0.91717 0.96894 0.98807 0.90481 1.21908 1.00649 0.95370 0.98874 1.21562 0.95492 0.97164 1.01452 1.21592 0.96168 1.00838 0.97637 1.21534 1.02058 0.92659 0.98555 1.21190 0.95935 0.96721 0.96045 0.87873 1.23579 0.81539 0.77458 0.86745 1.90490 1.61502 1.46328 1.41873 1.86713 1.22519 1.68954 1.48497 1.21640 0.92235 0.94418 0.85183 1.18620 0.90698 1.01690 1.13721 1.20424 0.94433 0.96151 0.96226 1.20908 0.92890 1.00505 1.10851 1.17739 0.93441 0.89478 0.89327 1.20702 0.91634 1.30492 1.11227 0.90355 1.27099 1.06642 0.92572 0.92177 1.70405 1.20047 1.31679 1.19167 0.83575 0.72723 0.77730 0.76618 1.20020 1.19824 1.20276 1.21131 0.93221 1.00357 1.09745 1.20460 0.94091 0.95687 0.97069 0.92538 0.93085 0.93275 0.89209 0.92695 0.92020 0.89192 0.92235 0.92171 0.91512 0.92120 0.90674 0.90234 0.92192 0.92203 0.89196 0.88651 0.88503 0.87507 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.14 -1.46 5.03 -26.73 -0.13 -1.60 16 3 C -0.07 -0.68 1.93 -90.62 -0.18 -0.85 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.13 -1.41 4.69 -26.73 -0.13 -1.53 16 6 C -0.12 -1.17 5.92 -26.72 -0.16 -1.33 16 7 C -0.12 -1.37 5.70 -26.73 -0.15 -1.53 16 8 C -0.11 -1.18 5.40 -26.71 -0.14 -1.33 16 9 C -0.08 -0.93 2.65 -91.75 -0.24 -1.17 16 10 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 11 C 0.46 7.06 5.47 36.00 0.20 7.26 16 12 O -0.51 -8.45 11.12 -18.75 -0.21 -8.66 16 13 O -0.35 -6.24 10.11 -39.26 -0.40 -6.64 16 14 C 0.14 2.58 5.58 36.01 0.20 2.78 16 15 C -0.25 -5.35 5.54 -104.33 -0.58 -5.93 16 16 C -0.05 -1.20 9.67 -39.66 -0.38 -1.58 16 17 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 18 C 0.10 2.69 5.30 -106.82 -0.57 2.12 16 19 C -0.51 -13.34 8.98 -37.74 -0.34 -13.68 16 20 H 0.08 1.98 7.96 -52.49 -0.42 1.56 16 21 C 0.04 0.94 4.93 -17.34 -0.09 0.85 16 22 N -0.79 -20.52 12.31 55.55 0.68 -19.84 16 23 Si 1.07 21.06 30.00 -169.99 -5.10 15.96 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 27 C -0.23 -5.67 7.96 -38.87 -0.31 -5.98 16 28 C -0.05 -1.24 9.67 -39.66 -0.38 -1.63 16 29 H 0.06 0.51 6.56 -51.93 -0.34 0.16 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 1.19 5.65 -51.93 -0.29 0.89 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.09 1.21 5.52 -51.93 -0.29 0.92 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.81 7.22 -51.93 -0.37 0.43 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 43 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 46 H 0.30 8.03 6.70 -40.82 -0.27 7.76 16 47 H 0.11 2.76 6.49 -52.49 -0.34 2.42 16 48 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -27.03 373.13 -10.60 -37.63 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.80 Total: 8.01 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -3.40 Total: -32.08 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.68 Total: -19.84 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.61 Total: -15.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.10 Total: 15.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.03 -10.60 -37.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796323068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.957 kcal (2) G-P(sol) polarization free energy of solvation -27.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds