Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.53002 * 109.47335 * 239.99509 * 2 1 3 5 5 C 1.52995 * 109.47335 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47074 * 60.00140 * 5 4 2 7 7 C 1.53000 * 109.47283 * 300.00022 * 6 5 4 8 8 H 1.08997 * 109.46585 * 299.99862 * 7 6 5 9 9 O 1.45198 * 109.47157 * 180.02562 * 7 6 5 10 10 C 1.34230 * 117.00267 * 89.99433 * 9 7 6 11 11 O 1.20831 * 119.99957 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00317 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47200 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47165 * 305.00087 * 13 12 10 15 15 C 1.50700 * 109.47362 * 65.00171 * 13 12 10 16 16 H 1.07998 * 120.00188 * 31.94907 * 15 13 12 17 17 C 1.37879 * 120.00028 * 211.95410 * 15 13 12 18 18 N 1.31519 * 119.99864 * 5.85914 * 17 15 13 19 19 Si 1.86795 * 120.00166 * 185.85123 * 17 15 13 20 20 H 1.48504 * 109.46862 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47089 * 120.00154 * 19 17 15 22 22 H 1.48500 * 109.47733 * 240.00446 * 19 17 15 23 23 C 1.50700 * 109.47137 * 185.00191 * 13 12 10 24 24 C 1.38230 * 120.00349 * 118.31657 * 23 13 12 25 25 C 1.38235 * 120.00429 * 180.02562 * 24 23 13 26 26 C 1.38233 * 119.99599 * 359.97438 * 25 24 23 27 27 C 1.38231 * 120.00368 * 359.97438 * 26 25 24 28 28 C 1.38229 * 119.99946 * 0.04777 * 27 26 25 29 29 C 1.52995 * 109.47084 * 59.99984 * 7 6 5 30 30 H 1.09002 * 109.47172 * 300.00621 * 1 2 3 31 31 H 1.08997 * 109.47207 * 59.99827 * 1 2 3 32 32 H 1.08997 * 109.47510 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46692 * 300.00342 * 4 2 1 34 34 H 1.08997 * 109.46671 * 59.99692 * 4 2 1 35 35 H 1.09002 * 109.47172 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47510 * 299.99841 * 5 4 2 37 37 H 1.09003 * 109.47365 * 179.97438 * 6 5 4 38 38 H 1.09008 * 109.47133 * 60.00252 * 6 5 4 39 39 H 1.08999 * 109.47036 * 60.00292 * 12 10 9 40 40 H 1.09002 * 109.47233 * 300.00451 * 12 10 9 41 41 H 0.96995 * 119.99618 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.99851 * 359.97438 * 24 23 13 43 43 H 1.07999 * 120.00455 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.99952 * 179.70810 * 26 25 24 45 45 H 1.08002 * 120.00508 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00440 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47266 * 59.99958 * 29 7 6 48 48 H 1.09002 * 109.47172 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 1 3.9335 0.3075 1.2486 9 8 4.0555 -1.4040 2.4346 10 6 5.2351 -0.9999 2.9315 11 8 5.8421 -0.1041 2.3938 12 6 5.8019 -1.6625 4.1605 13 6 7.1439 -1.0186 4.5142 14 1 7.8075 -1.0642 3.6507 15 6 6.9237 0.4206 4.9030 16 1 6.0065 0.7135 5.3922 17 6 7.8931 1.3635 4.6340 18 7 8.9578 1.0316 3.9370 19 14 7.6940 3.1124 5.2594 20 1 6.4187 3.2269 6.0116 21 1 8.8289 3.4497 6.1558 22 1 7.6763 4.0507 4.1086 23 6 7.7687 -1.7605 5.6675 24 6 8.9875 -2.3918 5.5044 25 6 9.5604 -3.0728 6.5622 26 6 8.9145 -3.1221 7.7833 27 6 7.6961 -2.4899 7.9469 28 6 7.1231 -1.8093 6.8890 29 6 2.0405 -0.7209 1.2493 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6766 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1391 35 1 3.9333 -1.2351 -2.1392 36 1 3.9330 0.3069 -1.2498 37 1 5.1705 -1.4416 -0.0006 38 1 3.7175 -2.4695 0.0000 39 1 5.9484 -2.7249 3.9657 40 1 5.1090 -1.5380 4.9927 41 1 9.6396 1.6950 3.7476 42 1 9.4919 -2.3537 4.5501 43 1 10.5125 -3.5664 6.4346 44 1 9.3598 -3.6581 8.6085 45 1 7.1913 -2.5287 8.9009 46 1 6.1710 -1.3157 7.0166 47 1 1.6776 -1.7486 1.2496 48 1 1.6772 -0.2066 2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796515917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = -97.665259 kcal Electronic energy + Delta-G solvation = -26651.408687 eV Core-core repulsion = 23055.679794 eV Total energy + Delta-G solvation = -3595.728893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02338 -38.56765 -38.05362 -35.59431 -34.00291 -32.42878 -31.53332 -30.26013 -30.03424 -28.82711 -26.49148 -25.77167 -23.27491 -22.36149 -21.76619 -21.50383 -20.19235 -19.88165 -19.14130 -16.91875 -16.56425 -16.00531 -15.72363 -15.28683 -15.06259 -14.57133 -14.36509 -14.23712 -13.97793 -13.85140 -13.48169 -13.20466 -12.65525 -12.53997 -12.50982 -12.34447 -12.16712 -11.96359 -11.89071 -11.65970 -11.53751 -11.08719 -11.01814 -10.93019 -10.76367 -10.64402 -10.58285 -10.53419 -10.35615 -10.28625 -10.10198 -9.73140 -9.50303 -9.33825 -9.06718 -8.39373 -8.07301 -7.66923 -5.98055 -3.98141 2.26020 2.30470 3.22961 3.33222 3.33916 3.41156 3.43539 4.47464 4.57945 4.66662 4.71039 4.77175 5.04738 5.06441 5.26545 5.34905 5.37953 5.42113 5.51253 5.55496 5.58877 5.64495 5.69853 5.70495 5.75018 5.82039 5.91057 5.92964 6.06289 6.07307 6.13677 6.14662 6.17292 6.20337 6.27088 6.29846 6.37919 6.40915 6.50131 6.73679 6.87527 6.99341 7.25813 7.28794 7.40672 7.49529 7.83458 7.90502 8.00338 8.31543 8.78948 9.02146 9.63638 11.11847 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.003584 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.075444 B = 7809.685842 C = 8794.166123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.089 3.911 8 H 0.082 0.918 9 O -0.371 6.371 10 C 0.453 3.547 11 O -0.464 6.464 12 C -0.094 4.094 13 C 0.073 3.927 14 H 0.076 0.924 15 C -0.498 4.498 16 H 0.053 0.947 17 C 0.079 3.921 18 N -0.878 5.878 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.024 4.024 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.131 4.131 28 C -0.115 4.115 29 C -0.108 4.108 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.259 0.741 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.071 0.929 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -6.919 -5.318 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.172 4.172 7 C 0.033 3.967 8 H 0.100 0.900 9 O -0.290 6.290 10 C 0.294 3.706 11 O -0.346 6.346 12 C -0.132 4.132 13 C 0.055 3.945 14 H 0.095 0.905 15 C -0.535 4.535 16 H 0.071 0.929 17 C -0.125 4.125 18 N -0.515 5.515 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.025 4.025 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.172 4.172 27 C -0.149 4.149 28 C -0.133 4.133 29 C -0.146 4.146 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.132 0.868 47 H 0.090 0.910 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.195 -6.533 -5.598 14.119 hybrid contribution 0.169 1.226 0.401 1.301 sum -11.025 -5.306 -5.197 13.294 Atomic orbital electron populations 1.21800 0.94874 1.01843 1.01699 1.21108 0.95600 0.99875 0.94366 0.90910 1.21639 0.95585 1.00708 0.97341 1.21479 0.95406 1.01161 0.97349 1.21913 1.01562 0.99834 0.93856 1.22512 0.93746 0.97385 0.83008 0.89998 1.86566 1.38640 1.60965 1.42828 1.23955 0.78516 0.82248 0.85863 1.90720 1.58346 1.27196 1.58331 1.21577 1.00429 0.98920 0.92286 1.17931 0.89843 0.93269 0.93477 0.90544 1.20742 1.02804 0.90834 1.39152 0.92925 1.24818 0.95423 0.98259 0.93999 1.69907 1.09853 1.34345 1.37386 0.86654 0.78022 0.85392 0.78616 1.19820 1.21071 1.21092 1.20662 0.93986 0.91082 0.96750 1.21099 0.96213 0.97712 0.98689 1.20990 0.99290 1.00569 0.93756 1.20815 0.96562 1.02683 0.97136 1.20984 0.96175 0.99466 0.98296 1.20970 1.00453 0.98949 0.92919 1.21631 0.93166 1.01674 0.98135 0.92566 0.92651 0.92622 0.91821 0.91931 0.91590 0.91623 0.91195 0.91353 0.90579 0.89516 0.93098 0.86703 0.87546 0.87719 0.87547 0.86767 0.91048 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.86 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.09 5.20 -26.73 -0.14 -1.23 16 5 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 6 C -0.13 -1.83 5.56 -26.73 -0.15 -1.97 16 7 C 0.09 1.36 2.45 -26.73 -0.07 1.30 16 8 H 0.08 1.43 7.15 -51.93 -0.37 1.06 16 9 O -0.37 -6.65 9.88 -39.26 -0.39 -7.04 16 10 C 0.45 9.52 7.68 36.00 0.28 9.79 16 11 O -0.46 -11.47 14.20 -18.75 -0.27 -11.74 16 12 C -0.09 -1.89 5.04 -27.89 -0.14 -2.03 16 13 C 0.07 1.75 1.73 -92.93 -0.16 1.58 16 14 H 0.08 2.07 6.87 -51.93 -0.36 1.71 16 15 C -0.50 -13.26 6.44 -34.44 -0.22 -13.48 16 16 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.88 -25.52 12.81 55.43 0.71 -24.81 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.02 -0.53 4.77 -104.62 -0.50 -1.03 16 24 C -0.12 -2.49 9.67 -39.59 -0.38 -2.87 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.15 -2.64 10.05 -39.59 -0.40 -3.04 16 27 C -0.13 -2.32 10.05 -39.59 -0.40 -2.72 16 28 C -0.11 -2.29 8.86 -39.58 -0.35 -2.64 16 29 C -0.11 -1.31 4.87 -26.73 -0.13 -1.44 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.61 7.67 -51.93 -0.40 1.22 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 43 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.11 2.19 7.70 -52.48 -0.40 1.78 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -30.37 386.95 -10.71 -41.08 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.26 Total: 3.65 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -3.32 Total: -23.89 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.71 Total: -24.81 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.65 Total: -18.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.37 -10.71 -41.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796515917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.590 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds