Wall clock time and date at job start Tue Mar 31 2020 11:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.05730 * 2 1 4 4 C 1.54365 * 110.04736 * 238.52406 * 2 1 3 5 5 C 1.54894 * 104.19753 * 217.09035 * 4 2 1 6 6 C 1.54893 * 102.74759 * 37.97139 * 5 4 2 7 7 C 1.53879 * 110.02959 * 121.41345 * 2 1 3 8 8 H 1.09000 * 110.03160 * 238.61710 * 7 2 1 9 9 O 1.45201 * 110.03296 * 0.02562 * 7 2 1 10 10 C 1.34230 * 116.99663 * 209.30917 * 9 7 2 11 11 O 1.20825 * 120.00377 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99693 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.47073 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47088 * 304.99737 * 13 12 10 15 15 C 1.50702 * 109.47293 * 64.99976 * 13 12 10 16 16 H 1.08001 * 119.99917 * 34.17388 * 15 13 12 17 17 C 1.37876 * 120.00053 * 213.90341 * 15 13 12 18 18 N 1.31517 * 119.99979 * 354.62152 * 17 15 13 19 19 Si 1.86805 * 119.99921 * 174.61439 * 17 15 13 20 20 H 1.48492 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46576 * 120.00435 * 19 17 15 22 22 H 1.48504 * 109.47191 * 239.99880 * 19 17 15 23 23 C 1.50702 * 109.47178 * 184.99660 * 13 12 10 24 24 C 1.38232 * 120.00192 * 297.98771 * 23 13 12 25 25 C 1.38236 * 119.99812 * 179.76373 * 24 23 13 26 26 C 1.38233 * 120.00153 * 0.50426 * 25 24 23 27 27 C 1.38238 * 119.99927 * 359.75175 * 26 25 24 28 28 C 1.38231 * 119.99987 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46920 * 298.58549 * 1 2 3 30 30 H 1.09005 * 109.46805 * 58.57992 * 1 2 3 31 31 H 1.08994 * 109.46968 * 178.58607 * 1 2 3 32 32 H 1.08994 * 109.46861 * 181.41509 * 3 2 1 33 33 H 1.09003 * 109.46690 * 301.41623 * 3 2 1 34 34 H 1.09004 * 109.47296 * 61.41481 * 3 2 1 35 35 H 1.09004 * 110.46133 * 98.42938 * 4 2 1 36 36 H 1.08998 * 110.62436 * 335.83710 * 4 2 1 37 37 H 1.08993 * 110.75769 * 279.65388 * 5 4 2 38 38 H 1.09001 * 110.91216 * 156.35584 * 5 4 2 39 39 H 1.08998 * 110.48651 * 203.37781 * 6 5 4 40 40 H 1.09001 * 110.59592 * 80.78578 * 6 5 4 41 41 H 1.09000 * 109.47272 * 59.99838 * 12 10 9 42 42 H 1.09003 * 109.46828 * 299.99798 * 12 10 9 43 43 H 0.96999 * 119.99975 * 180.02562 * 18 17 15 44 44 H 1.07995 * 119.99792 * 359.97438 * 24 23 13 45 45 H 1.08000 * 119.99694 * 180.23436 * 25 24 23 46 46 H 1.08004 * 119.99941 * 179.71883 * 26 25 24 47 47 H 1.08000 * 119.99869 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00073 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4373 0.0000 4 6 2.0592 -0.7572 -1.2367 5 6 3.3146 -1.5015 -0.7181 6 6 2.8882 -1.9406 0.7048 7 6 2.0571 -0.7535 1.2338 8 1 2.6860 -0.0950 1.8330 9 8 0.9458 -1.2411 2.0311 10 6 1.1504 -1.3620 3.3522 11 8 2.2227 -1.0705 3.8266 12 6 0.0431 -1.8625 4.2435 13 6 0.5344 -1.9059 5.6917 14 1 1.4430 -2.5052 5.7493 15 6 0.8255 -0.5053 6.1657 16 1 0.2238 0.3198 5.8140 17 6 1.8563 -0.2779 7.0526 18 7 2.5172 -1.2921 7.5667 19 14 2.3144 1.4707 7.5240 20 1 1.4249 2.4240 6.8133 21 1 2.1562 1.6456 8.9902 22 1 3.7258 1.7323 7.1436 23 6 -0.5291 -2.5207 6.5647 24 6 -1.7629 -1.9092 6.6855 25 6 -2.7400 -2.4758 7.4825 26 6 -2.4798 -3.6483 8.1669 27 6 -1.2441 -4.2570 8.0503 28 6 -0.2690 -3.6935 7.2489 29 1 -0.3633 0.4917 0.9024 30 1 -0.3633 0.5358 -0.8770 31 1 -0.3633 -1.0273 -0.0254 32 1 3.1443 1.4262 -0.0254 33 1 1.6761 1.9622 -0.8771 34 1 1.7175 1.9472 0.9024 35 1 2.3304 -0.0557 -2.0258 36 1 1.3164 -1.4682 -1.5984 37 1 4.1716 -0.8294 -0.6743 38 1 3.5372 -2.3688 -1.3396 39 1 3.7643 -2.1028 1.3326 40 1 2.2789 -2.8433 0.6609 41 1 -0.2513 -2.8640 3.9298 42 1 -0.8134 -1.1923 4.1699 43 1 3.2422 -1.1322 8.1910 44 1 -1.9646 -0.9907 6.1546 45 1 -3.7053 -2.0001 7.5738 46 1 -3.2417 -4.0886 8.7931 47 1 -1.0407 -5.1728 8.5853 48 1 0.6965 -4.1688 7.1581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799516340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:10 Heat of formation + Delta-G solvation = -88.527212 kcal Electronic energy + Delta-G solvation = -27101.462552 eV Core-core repulsion = 23506.129915 eV Total energy + Delta-G solvation = -3595.332637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17696 -38.61252 -38.03331 -35.31035 -33.99848 -32.22381 -31.52662 -30.01615 -29.17966 -27.94238 -27.28236 -25.73862 -24.38929 -22.92917 -21.67689 -21.10696 -20.34308 -19.22040 -18.71176 -17.02235 -16.55826 -15.91104 -15.70476 -15.33662 -15.06009 -14.63489 -14.31761 -14.07526 -13.84282 -13.49208 -13.36480 -13.01035 -12.81945 -12.60638 -12.35274 -12.26395 -12.15951 -11.96308 -11.69149 -11.58268 -11.44280 -11.13587 -10.99167 -10.88689 -10.75317 -10.61048 -10.58456 -10.52937 -10.34152 -10.26539 -10.09871 -9.84147 -9.52305 -9.36584 -9.05431 -8.41462 -8.04778 -7.63289 -5.98835 -3.99350 2.28544 2.33007 3.21734 3.34073 3.38318 3.41396 3.43684 4.42757 4.47523 4.54286 4.73736 4.79889 5.17510 5.24663 5.29654 5.35145 5.39015 5.49354 5.57677 5.66245 5.67778 5.72174 5.72546 5.81163 5.83790 5.88859 5.89584 6.00032 6.02719 6.08399 6.12576 6.14017 6.19026 6.26856 6.31609 6.35080 6.40826 6.47969 6.51899 6.75441 6.89453 7.01435 7.27226 7.30988 7.40985 7.51146 7.81403 7.92479 8.01191 8.31185 8.78354 9.01148 9.63396 11.11127 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.004120 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.466688 B = 6794.917087 C = 7897.437981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.140 4.140 7 C 0.091 3.909 8 H 0.086 0.914 9 O -0.362 6.362 10 C 0.453 3.547 11 O -0.468 6.468 12 C -0.095 4.095 13 C 0.076 3.924 14 H 0.073 0.927 15 C -0.497 4.497 16 H 0.053 0.947 17 C 0.079 3.921 18 N -0.880 5.880 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.022 4.022 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.116 4.116 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.259 0.741 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -1.504 -13.846 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.178 4.178 7 C 0.036 3.964 8 H 0.104 0.896 9 O -0.281 6.281 10 C 0.294 3.706 11 O -0.351 6.351 12 C -0.133 4.133 13 C 0.057 3.943 14 H 0.091 0.909 15 C -0.535 4.535 16 H 0.071 0.929 17 C -0.125 4.125 18 N -0.516 5.516 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.022 4.022 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.146 4.146 28 C -0.135 4.135 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.587 -1.434 -13.578 14.117 hybrid contribution 0.499 1.076 0.625 1.341 sum -3.088 -0.358 -12.953 13.321 Atomic orbital electron populations 1.21639 0.93280 1.02297 1.01201 1.21282 0.97018 0.94959 0.93452 1.21924 1.00932 0.94816 1.02086 1.22487 0.97309 0.98806 0.96443 1.22411 0.97731 0.99986 0.95830 1.22772 1.00021 0.98487 0.96476 1.23285 0.86960 0.95442 0.90749 0.89597 1.86624 1.42288 1.78141 1.21030 1.23968 0.90411 0.75653 0.80538 1.90699 1.26641 1.43397 1.74354 1.21597 0.95148 1.00470 0.96074 1.17910 0.93092 0.98044 0.85217 0.90861 1.20754 1.15015 0.90904 1.26788 0.92919 1.24819 0.95685 0.96457 0.95502 1.69917 1.21986 1.29939 1.29806 0.86627 0.78527 0.85465 0.77875 1.19874 1.21233 1.20987 1.20627 0.93903 0.91328 0.96384 1.20947 0.93487 0.99353 0.99551 1.20972 0.98826 0.96487 0.98672 1.20808 0.97120 0.97352 1.01962 1.20985 0.94102 0.99809 0.99734 1.21080 0.98403 0.96196 0.97772 0.92191 0.93355 0.91968 0.92511 0.92299 0.92251 0.91474 0.91174 0.91411 0.91311 0.90932 0.90582 0.90594 0.89521 0.93086 0.86858 0.87604 0.87762 0.87592 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 7.42 37.16 0.28 -1.23 16 2 C -0.07 -0.81 0.94 -153.33 -0.14 -0.95 16 3 C -0.14 -1.57 8.15 37.16 0.30 -1.27 16 4 C -0.11 -1.13 5.90 -25.02 -0.15 -1.28 16 5 C -0.12 -1.26 6.91 -24.73 -0.17 -1.44 16 6 C -0.14 -1.88 6.57 -25.07 -0.16 -2.04 16 7 C 0.09 1.39 2.86 -25.61 -0.07 1.31 16 8 H 0.09 1.50 6.70 -51.93 -0.35 1.15 16 9 O -0.36 -6.28 8.00 -39.26 -0.31 -6.60 16 10 C 0.45 9.35 7.70 36.01 0.28 9.63 16 11 O -0.47 -11.46 14.21 -18.75 -0.27 -11.73 16 12 C -0.09 -1.88 5.04 -27.88 -0.14 -2.02 16 13 C 0.08 1.80 1.68 -92.92 -0.16 1.65 16 14 H 0.07 1.98 6.97 -51.93 -0.36 1.62 16 15 C -0.50 -13.22 6.43 -34.44 -0.22 -13.44 16 16 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 17 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 18 N -0.88 -25.54 12.86 55.43 0.71 -24.83 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 24 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 25 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 26 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 28 C -0.12 -2.45 9.67 -39.58 -0.38 -2.83 16 29 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 36 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.11 2.18 7.71 -52.49 -0.40 1.78 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 48 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -30.26 386.35 -10.13 -40.39 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.18 Total: 3.90 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.89 Total: -24.00 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.71 Total: -24.83 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.58 Total: -18.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.26 -10.13 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799516340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.142 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds