Wall clock time and date at job start Tue Mar 31 2020 11:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.05197 * 2 1 4 4 C 1.54369 * 110.04998 * 238.52676 * 2 1 3 5 5 C 1.54883 * 104.19749 * 217.09011 * 4 2 1 6 6 C 1.54890 * 102.75132 * 37.97124 * 5 4 2 7 7 C 1.53876 * 110.03031 * 121.41563 * 2 1 3 8 8 H 1.08997 * 110.02913 * 238.62002 * 7 2 1 9 9 O 1.45200 * 110.03138 * 0.02562 * 7 2 1 10 10 C 1.34231 * 116.99975 * 209.31017 * 9 7 2 11 11 O 1.20834 * 119.99498 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00170 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47210 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47574 * 54.99764 * 13 12 10 15 15 C 1.50698 * 109.47007 * 294.99968 * 13 12 10 16 16 H 1.07999 * 120.00471 * 119.60074 * 15 13 12 17 17 C 1.37887 * 120.00139 * 299.87046 * 15 13 12 18 18 N 1.31515 * 119.99680 * 7.78508 * 17 15 13 19 19 Si 1.86797 * 120.00209 * 187.77986 * 17 15 13 20 20 H 1.48497 * 109.46873 * 59.99996 * 19 17 15 21 21 H 1.48496 * 109.47005 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47059 * 300.00301 * 19 17 15 23 23 C 1.50700 * 109.47417 * 175.00001 * 13 12 10 24 24 C 1.38230 * 120.00139 * 209.59492 * 23 13 12 25 25 C 1.38237 * 119.99897 * 179.76160 * 24 23 13 26 26 C 1.38234 * 120.00088 * 0.51141 * 25 24 23 27 27 C 1.38241 * 119.99904 * 359.74083 * 26 25 24 28 28 C 1.38235 * 119.99589 * 29.86666 * 23 13 12 29 29 H 1.08996 * 109.47761 * 298.58457 * 1 2 3 30 30 H 1.09007 * 109.46914 * 58.58459 * 1 2 3 31 31 H 1.09005 * 109.47051 * 178.58052 * 1 2 3 32 32 H 1.09003 * 109.46688 * 181.41484 * 3 2 1 33 33 H 1.08996 * 109.47717 * 301.41439 * 3 2 1 34 34 H 1.09003 * 109.46914 * 61.42000 * 3 2 1 35 35 H 1.09001 * 110.46133 * 98.42464 * 4 2 1 36 36 H 1.09004 * 110.62245 * 335.84190 * 4 2 1 37 37 H 1.09002 * 110.75909 * 279.65351 * 5 4 2 38 38 H 1.09004 * 110.75913 * 156.28332 * 5 4 2 39 39 H 1.08994 * 110.48865 * 203.38163 * 6 5 4 40 40 H 1.08997 * 110.59737 * 80.78548 * 6 5 4 41 41 H 1.08998 * 109.47536 * 59.99759 * 12 10 9 42 42 H 1.09004 * 109.47013 * 299.99865 * 12 10 9 43 43 H 0.96994 * 119.99683 * 179.97438 * 18 17 15 44 44 H 1.08002 * 119.99888 * 359.97438 * 24 23 13 45 45 H 1.07999 * 119.99986 * 180.22796 * 25 24 23 46 46 H 1.07996 * 120.00394 * 179.72133 * 26 25 24 47 47 H 1.07999 * 119.99857 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.00602 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0592 -0.7571 -1.2368 5 6 3.3146 -1.5013 -0.7182 6 6 2.8882 -1.9406 0.7046 7 6 2.0570 -0.7536 1.2338 8 1 2.6859 -0.0951 1.8329 9 8 0.9457 -1.2412 2.0310 10 6 1.1503 -1.3621 3.3521 11 8 2.2227 -1.0706 3.8265 12 6 0.0430 -1.8625 4.2433 13 6 0.5343 -1.9060 5.6916 14 1 0.9117 -0.9241 5.9770 15 6 1.6382 -2.9243 5.8173 16 1 2.6211 -2.6178 6.1433 17 6 1.3948 -4.2464 5.5106 18 7 0.2502 -4.5947 4.9644 19 14 2.6907 -5.5426 5.8707 20 1 2.9822 -5.5599 7.3266 21 1 2.1881 -6.8751 5.4501 22 1 3.9321 -5.2231 5.1210 23 6 -0.6072 -2.2883 6.5981 24 6 -0.6373 -1.8309 7.9022 25 6 -1.6870 -2.1775 8.7322 26 6 -2.7012 -2.9903 8.2613 27 6 -2.6684 -3.4520 6.9587 28 6 -1.6214 -3.1010 6.1272 29 1 -0.3634 0.4917 0.9023 30 1 -0.3633 0.5357 -0.8771 31 1 -0.3633 -1.0274 -0.0255 32 1 3.1443 1.4262 -0.0254 33 1 1.6760 1.9623 -0.8770 34 1 1.7173 1.9471 0.9025 35 1 2.3304 -0.0556 -2.0258 36 1 1.3164 -1.4681 -1.5986 37 1 4.1716 -0.8292 -0.6743 38 1 3.5342 -2.3688 -1.3406 39 1 3.7643 -2.1027 1.3325 40 1 2.2790 -2.8433 0.6608 41 1 -0.2513 -2.8641 3.9297 42 1 -0.8135 -1.1924 4.1698 43 1 0.0791 -5.5247 4.7483 44 1 0.1576 -1.1998 8.2716 45 1 -1.7124 -1.8171 9.7500 46 1 -3.5189 -3.2648 8.9111 47 1 -3.4606 -4.0873 6.5910 48 1 -1.5955 -3.4624 5.1097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799516342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:14 Heat of formation + Delta-G solvation = -82.162222 kcal Electronic energy + Delta-G solvation = -27436.352521 eV Core-core repulsion = 23841.295890 eV Total energy + Delta-G solvation = -3595.056630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07422 -38.55866 -37.90839 -35.23991 -34.19028 -32.15762 -31.15033 -29.87238 -28.88067 -27.82364 -27.25577 -25.98457 -24.34035 -22.78821 -21.56136 -20.94771 -20.25789 -19.19162 -18.65063 -16.97295 -16.33639 -15.77915 -15.52504 -15.34517 -15.05613 -14.65059 -14.20747 -13.88399 -13.77924 -13.39661 -13.25016 -12.95262 -12.92366 -12.54467 -12.25951 -12.12605 -12.05489 -11.62298 -11.57862 -11.48021 -11.31056 -11.06469 -10.93222 -10.87223 -10.79839 -10.53894 -10.47827 -10.45380 -10.29619 -10.22943 -9.99334 -9.74930 -9.42746 -9.34192 -9.05055 -8.49316 -7.83171 -7.48508 -6.05019 -4.13291 2.45429 2.53981 3.30688 3.33787 3.37738 3.38981 3.54706 4.39574 4.49676 4.61621 4.86152 4.93191 5.19414 5.24742 5.30972 5.37004 5.42186 5.56811 5.65138 5.71105 5.78638 5.80829 5.85818 5.88687 5.95147 5.96390 5.98239 6.01909 6.13536 6.20536 6.29269 6.32837 6.36819 6.42024 6.46565 6.53057 6.55934 6.70446 6.73466 7.04914 7.09811 7.23708 7.35512 7.48228 7.50045 7.68086 7.91097 8.05248 8.13730 8.28439 8.82684 8.93387 9.50845 10.90621 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.004209 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.449235 B = 6651.590894 C = 7724.108144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.140 4.140 7 C 0.092 3.908 8 H 0.082 0.918 9 O -0.358 6.358 10 C 0.467 3.533 11 O -0.502 6.502 12 C -0.113 4.113 13 C 0.086 3.914 14 H 0.038 0.962 15 C -0.481 4.481 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.030 4.030 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.074 4.074 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 6.813 -9.301 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.177 4.177 7 C 0.036 3.964 8 H 0.100 0.900 9 O -0.276 6.276 10 C 0.311 3.689 11 O -0.388 6.388 12 C -0.151 4.151 13 C 0.067 3.933 14 H 0.057 0.943 15 C -0.519 4.519 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.030 4.030 24 C -0.147 4.147 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.161 4.161 28 C -0.093 4.093 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.361 6.738 -9.237 11.514 hybrid contribution 0.917 -1.016 0.436 1.436 sum -0.444 5.722 -8.801 10.507 Atomic orbital electron populations 1.21639 0.93263 1.02509 1.01006 1.21286 0.97029 0.94829 0.93631 1.21910 1.00869 0.94896 1.01912 1.22486 0.97402 0.98797 0.96361 1.22416 0.97597 0.99915 0.96027 1.22762 1.00106 0.98690 0.96190 1.23232 0.87069 0.95367 0.90686 0.89999 1.86654 1.41776 1.77979 1.21232 1.24270 0.90467 0.73617 0.80537 1.90553 1.27342 1.45763 1.75132 1.21853 0.92726 1.04611 0.95877 1.17685 0.91465 0.96450 0.87714 0.94348 1.20963 0.95698 0.91749 1.43457 0.92055 1.24893 0.95552 0.98477 0.94839 1.69555 1.23214 1.17773 1.42016 0.86636 0.81902 0.80547 0.78944 1.20251 1.21270 1.20388 1.20242 0.93768 0.94662 0.94376 1.20900 0.97786 1.01708 0.94353 1.20806 0.95883 1.00686 0.98650 1.20794 0.99115 1.00959 0.96163 1.21078 0.99218 1.01322 0.94472 1.21523 0.91469 0.94562 1.01732 0.92331 0.93403 0.91780 0.92565 0.92313 0.92459 0.91553 0.91126 0.91526 0.91350 0.91007 0.90354 0.83859 0.92010 0.92572 0.87555 0.87993 0.88204 0.87946 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 7.42 37.16 0.28 -1.31 16 2 C -0.07 -0.85 0.94 -153.34 -0.14 -0.99 16 3 C -0.14 -1.51 8.15 37.16 0.30 -1.21 16 4 C -0.11 -1.23 5.90 -25.02 -0.15 -1.37 16 5 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 6 C -0.14 -2.13 6.57 -25.07 -0.16 -2.29 16 7 C 0.09 1.48 2.86 -25.61 -0.07 1.41 16 8 H 0.08 1.43 6.70 -51.93 -0.35 1.08 16 9 O -0.36 -6.78 8.00 -39.26 -0.31 -7.10 16 10 C 0.47 10.26 7.70 36.00 0.28 10.54 16 11 O -0.50 -12.23 14.21 -18.76 -0.27 -12.50 16 12 C -0.11 -2.48 4.29 -27.89 -0.12 -2.60 16 13 C 0.09 2.05 1.97 -92.92 -0.18 1.86 16 14 H 0.04 0.92 7.90 -51.93 -0.41 0.51 16 15 C -0.48 -12.77 7.27 -34.44 -0.25 -13.02 16 16 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 17 C 0.06 1.64 5.13 -17.82 -0.09 1.55 16 18 N -0.89 -22.50 7.89 55.43 0.44 -22.06 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.03 -0.68 4.65 -104.63 -0.49 -1.16 16 24 C -0.13 -2.73 9.70 -39.58 -0.38 -3.11 16 25 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 26 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 27 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 28 C -0.07 -1.63 7.51 -39.58 -0.30 -1.92 16 29 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 36 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.14 3.37 4.68 -51.93 -0.24 3.13 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 44 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 45 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.14 3.26 5.08 -52.49 -0.27 2.99 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -27.56 375.41 -10.30 -37.86 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.94 Total: 6.64 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.85 Total: -24.75 kcal Atomic # 7 Polarization: -22.50 SS G_CDS: 0.44 Total: -22.06 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.58 Total: -19.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.56 -10.30 -37.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799516342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.305 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds