Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 120.00507 * 2 1 4 4 C 1.38210 * 120.00707 * 180.25396 * 3 2 1 5 5 C 1.38261 * 119.99544 * 359.76323 * 4 3 2 6 6 C 1.38215 * 120.00104 * 0.02817 * 5 4 3 7 7 C 1.38218 * 120.00119 * 179.78714 * 2 1 3 8 8 C 1.50705 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50698 * 110.01627 * 185.65198 * 8 7 2 10 10 O 1.20830 * 119.99778 * 245.88367 * 9 8 7 11 11 O 1.34226 * 120.00203 * 65.87869 * 9 8 7 12 12 C 1.45205 * 116.99993 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47221 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47015 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46978 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99690 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99856 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99952 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47019 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47272 * 119.99375 * 19 17 15 22 22 H 1.48494 * 109.47336 * 239.99925 * 19 17 15 23 23 C 1.53875 * 110.02644 * 307.03994 * 8 7 2 24 24 C 1.54367 * 106.54536 * 119.35125 * 23 8 7 25 25 C 1.54885 * 104.21801 * 23.57206 * 24 23 8 26 26 C 1.54264 * 110.03434 * 64.25330 * 8 7 2 27 27 H 1.09000 * 109.46982 * 265.62139 * 1 2 3 28 28 H 1.08997 * 109.46789 * 25.61842 * 1 2 3 29 29 H 1.08998 * 109.47385 * 145.61802 * 1 2 3 30 30 H 1.08005 * 119.99648 * 0.04204 * 3 2 1 31 31 H 1.08000 * 120.00581 * 179.79228 * 4 3 2 32 32 H 1.08004 * 119.99916 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.00245 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47052 * 60.00153 * 12 11 9 35 35 H 1.09001 * 109.46808 * 300.00030 * 12 11 9 36 36 H 1.09008 * 109.47145 * 299.99963 * 13 12 11 37 37 H 1.08996 * 109.47516 * 59.99784 * 13 12 11 38 38 H 1.09001 * 109.46788 * 299.99239 * 14 13 12 39 39 H 1.08996 * 109.47039 * 59.99984 * 14 13 12 40 40 H 0.97001 * 119.99791 * 180.02562 * 18 17 15 41 41 H 1.09005 * 110.02862 * 238.61892 * 23 8 7 42 42 H 1.08999 * 110.03669 * 0.04445 * 23 8 7 43 43 H 1.09000 * 110.46156 * 264.89259 * 24 23 8 44 44 H 1.08999 * 110.49448 * 142.26515 * 24 23 8 45 45 H 1.09005 * 110.75337 * 203.76417 * 25 24 23 46 46 H 1.08997 * 110.76062 * 80.38855 * 25 24 23 47 47 H 1.08998 * 110.48752 * 335.73680 * 26 8 7 48 48 H 1.08996 * 110.48374 * 98.24726 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0057 6 6 3.5807 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0087 9 6 2.4069 -3.6529 0.1526 10 8 2.5475 -4.4397 -0.7536 11 8 3.1079 -3.8038 1.2872 12 6 4.0164 -4.9344 1.3554 13 6 4.7207 -4.9416 2.7136 14 6 5.6785 -6.1326 2.7851 15 6 6.3726 -6.1393 4.1228 16 1 6.1529 -5.3707 4.8490 17 6 7.2889 -7.1260 4.4189 18 7 7.5568 -8.0616 3.5344 19 14 8.1499 -7.1340 6.0767 20 1 7.6766 -5.9822 6.8858 21 1 7.8409 -8.3999 6.7889 22 1 9.6168 -7.0258 5.8731 23 6 0.4265 -2.5190 1.1624 24 6 -0.9668 -2.6774 0.5169 25 6 -0.6782 -3.3398 -0.8531 26 6 0.6356 -2.6495 -1.2965 27 1 -0.3633 -0.0785 1.0247 28 1 -0.3633 0.9266 -0.4443 29 1 -0.3634 -0.8481 -0.5803 30 1 1.6584 2.1326 0.0007 31 1 4.1205 2.1326 -0.0087 32 1 5.3518 -0.0001 -0.0102 33 1 4.1206 -2.1324 -0.0020 34 1 4.7586 -4.8525 0.5613 35 1 3.4542 -5.8602 1.2331 36 1 5.2829 -4.0158 2.8363 37 1 3.9783 -5.0237 3.5074 38 1 5.1166 -7.0585 2.6623 39 1 6.4208 -6.0499 1.9913 40 1 8.2012 -8.7560 3.7429 41 1 0.6285 -3.3596 1.8263 42 1 0.4769 -1.5830 1.7186 43 1 -1.4356 -1.7032 0.3784 44 1 -1.5989 -3.3226 1.1269 45 1 -1.4815 -3.1313 -1.5598 46 1 -0.5310 -4.4138 -0.7397 47 1 0.4256 -1.6708 -1.7278 48 1 1.1741 -3.2725 -2.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810584935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = -80.392334 kcal Electronic energy + Delta-G solvation = -26929.052994 eV Core-core repulsion = 23334.073111 eV Total energy + Delta-G solvation = -3594.979882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49657 -39.47052 -37.77507 -36.29965 -34.00542 -32.73577 -32.29119 -31.60218 -29.03691 -28.83119 -27.05218 -26.69044 -23.89531 -22.63233 -22.37425 -21.54419 -20.63303 -20.37141 -19.35502 -17.66995 -16.82635 -16.73620 -16.10675 -15.90782 -15.73319 -15.17921 -14.76718 -14.50548 -14.45668 -14.22200 -13.87897 -13.26751 -13.20585 -13.06434 -12.51897 -12.38334 -12.21669 -12.17131 -12.00595 -11.91674 -11.62113 -11.52590 -11.32790 -11.29622 -11.16170 -10.99130 -10.88215 -10.64661 -10.59639 -10.42319 -10.37937 -10.16335 -9.72664 -9.49337 -9.15067 -8.92488 -8.71060 -8.39492 -6.03967 -4.06896 1.17536 1.26546 2.31061 2.83751 3.29754 3.37202 3.41681 3.57234 4.19550 4.32939 4.39156 4.44195 4.65852 4.75972 4.80308 4.94843 5.01307 5.09997 5.19046 5.21146 5.26691 5.32103 5.37577 5.39893 5.41811 5.48867 5.55669 5.59195 5.62004 5.69942 5.74688 5.80084 5.82785 5.95901 6.00820 6.02396 6.05668 6.14000 6.33312 6.40822 6.44663 6.53065 6.53672 6.83138 6.87050 6.98496 7.60047 7.70765 7.93006 7.94931 8.35724 8.99589 9.57494 11.07517 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.003004 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.575635 B = 9320.134179 C =10224.829628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.070 4.070 8 C -0.011 4.011 9 C 0.471 3.529 10 O -0.507 6.507 11 O -0.352 6.352 12 C 0.066 3.934 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 18.404 -9.641 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.070 4.070 8 C -0.012 4.012 9 C 0.314 3.686 10 O -0.395 6.395 11 O -0.268 6.268 12 C -0.007 4.007 13 C -0.145 4.145 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.152 4.152 24 C -0.173 4.173 25 C -0.164 4.164 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.230 17.978 -9.907 26.800 hybrid contribution 0.919 -0.300 0.875 1.304 sum -16.311 17.678 -9.032 25.693 Atomic orbital electron populations 1.21587 0.91406 1.03695 1.03012 1.19581 0.95999 0.91988 0.99807 1.20987 0.94241 0.97181 1.01496 1.21150 0.94328 0.98006 1.00034 1.21134 1.00169 0.92177 1.00107 1.21170 0.93436 0.98724 0.98834 1.19269 0.93273 0.92523 1.01939 1.20076 0.93428 0.88868 0.98816 1.23192 0.79437 0.85518 0.80484 1.90635 1.64085 1.44013 1.40749 1.86552 1.52164 1.49698 1.38375 1.23521 0.90404 0.85625 1.01160 1.21751 0.98575 1.02007 0.92206 1.19056 0.93207 0.91440 0.97619 1.21211 1.23025 1.11212 1.00407 0.92381 1.25031 0.96827 0.95493 0.97144 1.69978 1.34424 1.14425 1.34532 0.86496 0.79363 0.77969 0.83960 1.19654 1.20961 1.20968 1.22400 0.92748 1.04032 0.96064 1.22726 0.96498 1.01531 0.96514 1.22547 0.96735 1.00445 0.96655 1.22650 0.95493 1.02112 0.95094 0.90601 0.91910 0.88957 0.86016 0.86036 0.85781 0.86158 0.91616 0.91545 0.92166 0.92160 0.96259 0.96263 0.92954 0.90389 0.89676 0.90177 0.91121 0.90853 0.91004 0.89553 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 7.11 36.01 0.26 -0.77 16 2 C -0.07 -0.74 5.23 -104.62 -0.55 -1.29 16 3 C -0.12 -1.14 9.68 -39.59 -0.38 -1.52 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 6 C -0.10 -1.39 8.95 -39.58 -0.35 -1.74 16 7 C -0.07 -0.85 4.68 -104.62 -0.49 -1.34 16 8 C -0.01 -0.13 0.63 -155.69 -0.10 -0.23 16 9 C 0.47 7.48 4.83 36.00 0.17 7.66 16 10 O -0.51 -9.20 15.12 -18.75 -0.28 -9.48 16 11 O -0.35 -6.04 8.92 -39.25 -0.35 -6.39 16 12 C 0.07 1.24 5.47 37.15 0.20 1.44 16 13 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.12 -1.19 5.17 -25.56 -0.13 -1.33 16 24 C -0.14 -1.07 6.06 -25.02 -0.15 -1.22 16 25 C -0.13 -1.11 6.76 -24.74 -0.17 -1.27 16 26 C -0.12 -1.22 5.09 -25.07 -0.13 -1.35 16 27 H 0.08 0.50 6.39 -51.93 -0.33 0.17 16 28 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 29 H 0.09 0.65 2.45 -51.93 -0.13 0.52 16 30 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.80 6.03 -52.49 -0.32 1.48 16 34 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 0.92 7.49 -51.93 -0.39 0.53 16 42 H 0.08 0.82 5.60 -51.93 -0.29 0.53 16 43 H 0.08 0.49 5.42 -51.93 -0.28 0.21 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.77 5.72 -51.93 -0.30 0.47 16 48 H 0.09 1.11 6.77 -51.93 -0.35 0.76 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -31.76 370.43 -10.06 -41.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.42 Total: -0.22 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.31 Total: -21.75 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.63 Total: -15.88 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.76 -10.06 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810584935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.572 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds