Wall clock time and date at job start Tue Mar 31 2020 11:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47630 * 2 1 4 4 C 1.52998 * 109.47356 * 120.00438 * 2 1 3 5 5 C 1.52997 * 109.47222 * 64.99393 * 4 2 1 6 6 N 1.46493 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99899 * 90.00269 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.00279 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99923 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00006 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47093 * 90.00088 * 12 10 8 14 14 H 1.48500 * 109.47049 * 210.00797 * 12 10 8 15 15 H 1.48504 * 109.47189 * 330.00185 * 12 10 8 16 16 C 1.38912 * 120.00676 * 270.00390 * 6 5 4 17 17 C 1.39236 * 119.58398 * 184.99759 * 16 6 5 18 18 C 1.38070 * 119.21744 * 179.97438 * 17 16 6 19 19 C 1.39941 * 118.40354 * 0.02562 * 18 17 16 20 20 C 1.48427 * 120.45134 * 179.97438 * 19 18 17 21 21 N 1.34066 * 126.67491 * 359.68374 * 20 19 18 22 22 N 1.28975 * 107.26803 * 179.89686 * 21 20 19 23 23 N 1.28732 * 108.95049 * 0.37535 * 22 21 20 24 24 H 0.96995 * 125.34461 * 179.76530 * 23 22 21 25 25 N 1.28878 * 109.31934 * 359.76043 * 23 22 21 26 26 C 1.39126 * 119.10188 * 359.97438 * 19 18 17 27 27 N 1.31821 * 120.69177 * 359.75139 * 26 19 18 28 28 H 1.08995 * 109.47790 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46882 * 300.00246 * 1 2 3 30 30 H 1.09005 * 109.47272 * 59.99615 * 1 2 3 31 31 H 1.09005 * 109.46961 * 240.00305 * 2 1 3 32 32 H 1.08993 * 109.47560 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47107 * 300.00485 * 3 2 1 34 34 H 1.09005 * 109.47189 * 59.99942 * 3 2 1 35 35 H 1.09006 * 109.46906 * 304.99838 * 4 2 1 36 36 H 1.08996 * 109.47330 * 185.00230 * 4 2 1 37 37 H 1.09006 * 109.46817 * 60.00390 * 5 4 2 38 38 H 1.08996 * 109.47652 * 300.00640 * 5 4 2 39 39 H 1.09002 * 109.47068 * 30.00248 * 7 6 5 40 40 H 1.09001 * 109.47372 * 150.00336 * 7 6 5 41 41 H 0.97000 * 119.99684 * 180.02562 * 11 10 8 42 42 H 1.07999 * 120.38985 * 359.97438 * 17 16 6 43 43 H 1.07998 * 120.79451 * 179.97438 * 18 17 16 44 44 H 1.07997 * 119.66032 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1879 6 7 2.1230 -2.8860 2.3842 7 6 1.2825 -2.9585 3.5820 8 6 1.5603 -1.7681 4.4634 9 1 2.2902 -1.0315 4.1617 10 6 0.8835 -1.6199 5.6554 11 7 1.1256 -0.5808 6.4243 12 14 -0.3785 -2.8944 6.1776 13 1 0.2893 -3.9545 6.9748 14 1 -1.4285 -2.2429 7.0011 15 1 -0.9995 -3.4991 4.9718 16 6 3.3824 -3.4721 2.3830 17 6 3.7959 -4.2151 3.4856 18 6 5.0489 -4.7948 3.4761 19 6 5.8593 -4.6103 2.3502 20 6 7.2146 -5.2126 2.2920 21 7 7.8030 -5.9536 3.2418 22 7 8.9699 -6.2832 2.8021 23 7 9.1339 -5.7755 1.6306 24 1 9.9289 -5.8725 1.0833 25 7 8.0762 -5.1182 1.2988 26 6 5.3773 -3.8546 1.2862 27 7 4.1725 -3.3216 1.3307 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1262 -0.6444 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1419 39 1 0.2324 -2.9570 3.2897 40 1 1.5064 -3.8750 4.1281 41 1 0.6496 -0.4768 7.2631 42 1 3.1441 -4.3365 4.3381 43 1 5.3957 -5.3759 4.3178 44 1 5.9952 -3.7061 0.4130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820076171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:48 Heat of formation + Delta-G solvation = 154.022262 kcal Electronic energy + Delta-G solvation = -25980.334642 eV Core-core repulsion = 22356.564899 eV Total energy + Delta-G solvation = -3623.769744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.31316 -39.85108 -37.20908 -35.41603 -34.27861 -33.43439 -32.58067 -31.86838 -30.05481 -29.15391 -27.09267 -26.85104 -24.77680 -24.22506 -23.39579 -22.23592 -21.89981 -20.33563 -19.58529 -19.07407 -17.11200 -17.02325 -16.86008 -16.13255 -15.77341 -14.95464 -14.52949 -14.36310 -14.15193 -13.82025 -13.74390 -13.43726 -13.01476 -12.84131 -12.52504 -12.27801 -12.23191 -12.09130 -11.97660 -11.72489 -11.54795 -11.34345 -11.25056 -11.09689 -10.99717 -10.83697 -10.66831 -10.53078 -10.31429 -10.19212 -9.98243 -9.57099 -9.33022 -9.04401 -8.99078 -8.70264 -6.84107 -6.20121 -4.21245 1.00190 1.39047 1.80305 2.31344 2.66559 3.17764 3.24798 3.26830 3.60337 3.93837 4.26789 4.36533 4.38589 4.89305 5.11033 5.21162 5.24980 5.27425 5.30481 5.48228 5.51750 5.57225 5.71146 5.78712 5.85761 5.94569 6.03117 6.07542 6.12560 6.19110 6.20642 6.31448 6.39036 6.41974 6.44709 6.53122 6.53722 6.62540 6.74038 6.78388 6.93728 7.05654 7.42016 7.56660 8.06843 8.26292 8.34205 8.61469 8.87611 9.38490 10.92399 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004037 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.483872 B = 6933.847198 C = 8962.865325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.133 3.867 6 N -0.571 5.571 7 C 0.218 3.782 8 C -0.536 4.536 9 H 0.081 0.919 10 C 0.077 3.923 11 N -0.890 5.890 12 Si 0.868 3.132 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.436 3.564 17 C -0.229 4.229 18 C 0.005 3.995 19 C -0.171 4.171 20 C 0.254 3.746 21 N -0.278 5.278 22 N -0.058 5.058 23 N -0.236 5.236 24 H 0.471 0.529 25 N -0.312 5.312 26 C 0.197 3.803 27 N -0.552 5.552 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.266 0.734 42 H 0.145 0.855 43 H 0.137 0.863 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -6.260 -12.598 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.167 4.167 5 C 0.010 3.990 6 N -0.276 5.276 7 C 0.097 3.903 8 C -0.574 4.574 9 H 0.099 0.901 10 C -0.127 4.127 11 N -0.528 5.528 12 Si 0.695 3.305 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.190 1.190 16 C 0.198 3.802 17 C -0.254 4.254 18 C -0.022 4.022 19 C -0.181 4.181 20 C -0.025 4.025 21 N -0.152 5.152 22 N -0.053 5.053 23 N -0.081 5.081 24 H 0.325 0.675 25 N -0.164 5.164 26 C 0.034 3.966 27 N -0.270 5.270 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.409 -5.928 -12.839 15.964 hybrid contribution -0.102 -0.733 0.750 1.053 sum 7.308 -6.660 -12.089 15.618 Atomic orbital electron populations 1.21894 0.95668 1.01621 1.01360 1.21042 0.95514 0.96004 0.98543 1.21807 1.00796 0.96310 1.01265 1.22031 1.01374 0.95294 0.97972 1.21387 0.98235 0.92280 0.87130 1.46947 1.12597 1.53272 1.14784 1.19873 0.89833 0.98064 0.82524 1.21391 1.24625 1.07834 1.03593 0.90119 1.24857 0.96446 0.95295 0.96076 1.69885 1.41923 1.28497 1.12467 0.86978 0.82001 0.82137 0.79397 1.19811 1.20921 1.18958 1.18585 0.85965 0.86946 0.88663 1.21521 0.98404 1.04478 1.01027 1.21199 0.91653 0.93721 0.95584 1.17769 0.90064 1.10370 0.99903 1.23558 0.96076 0.96611 0.86266 1.76077 0.99786 1.14618 1.24683 1.78839 1.13467 1.16291 0.96707 1.47647 1.14883 1.32329 1.13214 0.67539 1.74922 0.96149 1.18868 1.26436 1.22316 0.90301 0.88428 0.95572 1.67326 1.05532 1.26870 1.27264 0.92679 0.92368 0.93496 0.91770 0.92964 0.93379 0.92586 0.90148 0.91976 0.90949 0.91411 0.94644 0.95109 0.92405 0.83706 0.84518 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 37.15 0.33 -1.57 16 2 C -0.09 -1.26 2.92 -90.63 -0.26 -1.53 16 3 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 4 C -0.13 -2.18 5.01 -26.73 -0.13 -2.31 16 5 C 0.13 2.25 5.19 -4.05 -0.02 2.23 16 6 N -0.57 -11.13 2.57 -175.19 -0.45 -11.58 16 7 C 0.22 4.70 4.11 -5.19 -0.02 4.68 16 8 C -0.54 -13.81 9.48 -34.44 -0.33 -14.14 16 9 H 0.08 2.35 7.67 -52.49 -0.40 1.94 16 10 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 12 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 16 C 0.44 8.29 7.37 -155.03 -1.14 7.15 16 17 C -0.23 -4.18 9.26 -39.27 -0.36 -4.54 16 18 C 0.01 0.09 9.83 -39.01 -0.38 -0.30 16 19 C -0.17 -2.68 5.89 -104.73 -0.62 -3.30 16 20 C 0.25 3.75 7.95 -156.29 -1.24 2.50 16 21 N -0.28 -4.18 12.30 32.15 0.40 -3.78 16 22 N -0.06 -0.72 13.47 60.35 0.81 0.09 16 23 N -0.24 -2.27 7.90 60.35 0.48 -1.79 16 24 H 0.47 2.08 8.96 -340.37 -3.05 -0.97 16 25 N -0.31 -3.89 12.10 32.17 0.39 -3.50 16 26 C 0.20 3.07 10.86 -17.23 -0.19 2.88 16 27 N -0.55 -9.73 9.13 -12.18 -0.11 -9.84 16 28 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.62 7.26 -51.93 -0.38 1.24 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 38 H 0.07 1.08 6.32 -51.93 -0.33 0.76 16 39 H 0.04 0.76 6.95 -51.93 -0.36 0.40 16 40 H 0.03 0.65 5.39 -51.93 -0.28 0.37 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.15 2.71 6.01 -52.49 -0.32 2.39 16 43 H 0.14 2.02 7.96 -52.49 -0.42 1.60 16 44 H 0.15 2.03 7.88 -52.49 -0.41 1.62 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -30.25 364.81 -9.81 -40.06 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.80 Total: 2.66 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -4.13 Total: -7.83 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 2.29 Total: -55.34 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.25 -9.81 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820076171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.081 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds