Wall clock time and date at job start Tue Mar 31 2020 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.53006 * 109.46986 * 119.99911 * 2 1 3 5 5 C 1.52998 * 109.46966 * 175.00179 * 4 2 1 6 6 N 1.46902 * 109.46770 * 180.02562 * 5 4 2 7 7 C 1.46907 * 110.99491 * 193.95375 * 6 5 4 8 8 C 1.50694 * 109.47265 * 71.32307 * 7 6 5 9 9 H 1.08006 * 119.99867 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99845 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99895 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46728 * 90.00155 * 12 10 8 14 14 H 1.48494 * 109.47174 * 210.00233 * 12 10 8 15 15 H 1.48503 * 109.47266 * 330.00483 * 12 10 8 16 16 C 1.38788 * 110.99845 * 70.00163 * 6 5 4 17 17 N 1.32336 * 119.79147 * 59.15980 * 16 6 5 18 18 C 1.31952 * 121.74344 * 180.28656 * 17 16 6 19 19 C 1.38171 * 121.11804 * 359.43267 * 18 17 16 20 20 C 1.38602 * 119.44731 * 0.27467 * 19 18 17 21 21 C 1.39473 * 118.39797 * 0.02562 * 20 19 18 22 22 C 1.48357 * 120.56878 * 180.02562 * 21 20 19 23 23 N 1.34070 * 126.68315 * 175.04666 * 22 21 20 24 24 N 1.28981 * 107.26782 * 179.83463 * 23 22 21 25 25 N 1.28729 * 108.95572 * 0.43415 * 24 23 22 26 26 H 0.97002 * 125.33873 * 179.76307 * 25 24 23 27 27 N 1.28876 * 109.32355 * 359.71974 * 25 24 23 28 28 H 1.08998 * 109.47506 * 300.00239 * 1 2 3 29 29 H 1.09007 * 109.47026 * 59.99532 * 1 2 3 30 30 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47558 * 240.00316 * 2 1 3 32 32 H 1.08999 * 109.47251 * 300.00154 * 3 2 1 33 33 H 1.09005 * 109.46845 * 60.00165 * 3 2 1 34 34 H 1.08999 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46858 * 55.00330 * 4 2 1 36 36 H 1.08998 * 109.46843 * 295.00095 * 4 2 1 37 37 H 1.08996 * 109.47208 * 60.00366 * 5 4 2 38 38 H 1.09005 * 109.46935 * 300.00256 * 5 4 2 39 39 H 1.09002 * 109.46838 * 191.32830 * 7 6 5 40 40 H 1.09001 * 109.46846 * 311.32047 * 7 6 5 41 41 H 0.97000 * 119.99961 * 179.97438 * 11 10 8 42 42 H 1.07997 * 119.43989 * 179.70409 * 18 17 16 43 43 H 1.07995 * 120.27514 * 180.29495 * 19 18 17 44 44 H 1.07995 * 120.80246 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0543 -1.5241 2.3872 7 6 5.5071 -1.3616 2.5328 8 6 5.8166 0.0593 2.9278 9 1 5.0143 0.7706 3.0581 10 6 7.1239 0.4512 3.1239 11 7 8.1008 -0.4150 2.9657 12 14 7.5076 2.2124 3.6142 13 1 7.5131 2.3239 5.0950 14 1 8.8410 2.5946 3.0840 15 1 6.4735 3.1188 3.0535 16 6 3.7038 -2.8667 2.3636 17 7 4.1132 -3.6357 1.3674 18 6 3.7980 -4.9154 1.3035 19 6 3.0321 -5.5122 2.2865 20 6 2.5825 -4.7525 3.3551 21 6 2.9231 -3.4007 3.3977 22 6 2.4680 -2.5430 4.5195 23 7 2.7974 -1.2609 4.7320 24 7 2.1922 -0.8832 5.8066 25 7 1.5125 -1.8718 6.2732 26 1 0.9697 -1.8500 7.0769 27 7 1.6654 -2.8950 5.5046 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 3.9994 0.1675 1.1422 38 1 3.8531 -1.3939 0.3003 39 1 5.8733 -2.0408 3.3028 40 1 5.9950 -1.5898 1.5852 41 1 9.0206 -0.1393 3.1033 42 1 4.1483 -5.5074 0.4709 43 1 2.7862 -6.5618 2.2230 44 1 1.9821 -5.1964 4.1354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820076575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:51 Heat of formation + Delta-G solvation = 164.781183 kcal Electronic energy + Delta-G solvation = -27336.881849 eV Core-core repulsion = 23713.578647 eV Total energy + Delta-G solvation = -3623.303202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.95402 -40.13980 -37.13388 -35.30770 -34.06904 -33.44266 -32.51765 -31.37505 -29.99157 -28.74497 -26.93223 -26.19829 -24.76258 -24.06336 -23.00374 -22.52152 -21.57570 -20.32546 -19.53328 -18.89710 -16.79308 -16.66277 -16.25747 -15.93463 -15.72201 -15.13032 -14.66116 -14.16819 -13.94978 -13.75695 -13.59622 -13.39431 -12.94115 -12.64905 -12.44490 -12.21191 -12.10538 -11.87671 -11.70695 -11.48661 -11.13884 -10.98394 -10.93804 -10.75610 -10.72553 -10.61413 -10.53857 -10.32451 -10.19086 -9.92871 -9.85509 -9.45455 -9.35188 -9.05384 -8.33121 -8.32255 -7.41099 -5.90871 -3.90032 0.89873 1.47085 1.65105 2.59582 2.83846 3.41329 3.46596 3.51071 4.04972 4.10456 4.38157 4.59520 4.64605 4.89599 5.05710 5.14284 5.19388 5.26550 5.37459 5.44937 5.54819 5.66369 5.79262 5.84880 5.86379 5.94363 5.99014 6.06721 6.08308 6.16017 6.26324 6.28416 6.31622 6.47141 6.51458 6.54994 6.69210 6.73987 6.87906 6.93238 7.34317 7.45946 7.94647 8.11279 8.22556 8.31280 8.64641 8.69858 9.17626 9.72200 11.20285 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.008518 B = 0.005838 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.384488 B = 4794.707097 C = 5395.081444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.106 4.106 5 C 0.069 3.931 6 N -0.475 5.475 7 C 0.211 3.789 8 C -0.492 4.492 9 H 0.069 0.931 10 C 0.054 3.946 11 N -0.902 5.902 12 Si 0.896 3.104 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.273 1.273 16 C 0.364 3.636 17 N -0.508 5.508 18 C 0.126 3.874 19 C -0.199 4.199 20 C -0.039 4.039 21 C -0.058 4.058 22 C 0.230 3.770 23 N -0.186 5.186 24 N -0.067 5.067 25 N -0.244 5.244 26 H 0.467 0.533 27 N -0.313 5.313 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.022 0.978 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.992 -7.153 -0.165 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.058 4.058 6 N -0.199 5.199 7 C 0.088 3.912 8 C -0.531 4.531 9 H 0.087 0.913 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.725 3.275 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.197 1.197 16 C 0.133 3.867 17 N -0.220 5.220 18 C -0.034 4.034 19 C -0.219 4.219 20 C -0.067 4.067 21 C -0.065 4.065 22 C -0.050 4.050 23 N -0.059 5.059 24 N -0.063 5.063 25 N -0.088 5.088 26 H 0.320 0.680 27 N -0.166 5.166 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.170 0.830 43 H 0.154 0.846 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.500 -5.960 -0.049 16.607 hybrid contribution -0.057 -0.402 0.708 0.817 sum -15.557 -6.362 0.660 16.821 Atomic orbital electron populations 1.21813 0.95965 1.01042 1.01208 1.21067 0.94911 0.96741 0.98609 1.21878 1.02100 0.95555 1.00974 1.21616 0.96274 0.99149 0.97401 1.22092 0.93508 1.00259 0.89905 1.60451 1.19547 1.02067 1.37804 1.19679 0.77344 0.97930 0.96229 1.21112 0.91932 0.94961 1.45060 0.91280 1.24951 0.96268 0.97488 0.95950 1.69976 0.99441 1.34283 1.50474 0.86519 0.77350 0.84979 0.78686 1.20830 1.21577 1.19739 1.20370 0.87677 0.91746 0.86888 1.68148 1.21432 1.06404 1.26060 1.22746 0.92611 0.90896 0.97101 1.21914 1.02623 1.01199 0.96173 1.21487 0.96089 0.91663 0.97480 1.18008 1.02962 0.92124 0.93407 1.23177 0.95682 0.91410 0.94770 1.76766 1.14706 1.09316 1.05075 1.79122 1.05082 1.14963 1.07155 1.47701 1.34009 1.05013 1.22058 0.68012 1.74788 1.21687 1.14825 1.05319 0.92968 0.93148 0.93299 0.91646 0.93523 0.92732 0.91652 0.93848 0.91396 0.88816 0.94530 0.95956 0.97609 0.93129 0.82984 0.84647 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.34 2.92 -90.62 -0.26 -1.60 16 3 C -0.15 -2.08 8.95 37.16 0.33 -1.75 16 4 C -0.11 -1.80 4.71 -26.73 -0.13 -1.92 16 5 C 0.07 1.38 4.51 -3.82 -0.02 1.37 16 6 N -0.48 -10.52 2.66 -174.31 -0.46 -10.98 16 7 C 0.21 5.64 4.54 -4.97 -0.02 5.62 16 8 C -0.49 -13.91 8.39 -34.44 -0.29 -14.20 16 9 H 0.07 1.95 7.59 -52.48 -0.40 1.55 16 10 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 12 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.36 7.27 4.31 -154.90 -0.67 6.60 16 17 N -0.51 -9.58 9.50 -12.22 -0.12 -9.70 16 18 C 0.13 1.81 11.16 -17.52 -0.20 1.61 16 19 C -0.20 -2.43 10.09 -39.47 -0.40 -2.82 16 20 C -0.04 -0.54 9.83 -38.99 -0.38 -0.92 16 21 C -0.06 -1.02 5.91 -104.56 -0.62 -1.64 16 22 C 0.23 4.13 7.90 -156.29 -1.23 2.90 16 23 N -0.19 -3.74 10.99 32.14 0.35 -3.38 16 24 N -0.07 -1.14 13.47 60.35 0.81 -0.33 16 25 N -0.24 -3.10 7.90 60.35 0.48 -2.62 16 26 H 0.47 3.36 8.96 -340.36 -3.05 0.31 16 27 N -0.31 -4.63 12.16 32.16 0.39 -4.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.01 6.56 -51.93 -0.34 0.67 16 35 H 0.04 0.74 7.52 -51.93 -0.39 0.35 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 2.02 5.44 -51.93 -0.28 1.73 16 38 H 0.04 0.75 7.54 -51.93 -0.39 0.35 16 39 H 0.02 0.66 7.98 -51.93 -0.41 0.25 16 40 H 0.01 0.17 8.06 -51.93 -0.42 -0.24 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.14 1.59 7.96 -52.49 -0.42 1.17 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -33.79 367.75 -9.97 -43.76 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -9.05 Total: -1.98 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.64 Total: -6.70 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 2.19 Total: -57.84 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.79 -9.97 -43.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820076575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.546 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds