Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 H 1.08997 * 109.47123 * 302.47395 * 3 2 1 5 5 C 1.52994 * 109.47103 * 182.46814 * 3 2 1 6 6 C 1.50697 * 109.47072 * 65.00276 * 5 3 2 7 7 C 1.38260 * 119.99739 * 264.99973 * 6 5 3 8 8 C 1.38218 * 119.99707 * 179.97438 * 7 6 5 9 9 C 1.38253 * 120.00163 * 359.97438 * 8 7 6 10 10 C 1.38213 * 120.00009 * 359.97438 * 9 8 7 11 11 C 1.38207 * 120.00253 * 84.88765 * 6 5 3 12 12 C 1.50704 * 119.99849 * 0.06559 * 11 6 5 13 13 C 1.50707 * 109.46952 * 62.46941 * 3 2 1 14 14 O 1.20820 * 120.00198 * 105.99296 * 13 3 2 15 15 O 1.34233 * 119.99664 * 285.98639 * 13 3 2 16 16 C 1.45204 * 116.99643 * 175.00184 * 15 13 3 17 17 C 1.52993 * 109.47161 * 184.90653 * 16 15 13 18 18 C 1.50698 * 115.55027 * 305.19458 * 17 16 15 19 19 H 1.08002 * 119.99948 * 146.71837 * 18 17 16 20 20 C 1.37870 * 120.00033 * 326.71514 * 18 17 16 21 21 N 1.31515 * 119.99937 * 359.37786 * 20 18 17 22 22 Si 1.86804 * 120.00284 * 179.37842 * 20 18 17 23 23 H 1.48500 * 109.47182 * 94.98826 * 22 20 18 24 24 H 1.48503 * 109.47211 * 214.98912 * 22 20 18 25 25 H 1.48504 * 109.46948 * 334.98518 * 22 20 18 26 26 C 1.53005 * 117.49812 * 159.52157 * 17 16 15 27 27 C 1.53006 * 117.49750 * 90.86465 * 17 16 15 28 28 H 1.09004 * 109.46506 * 175.93381 * 1 2 3 29 29 H 1.08995 * 109.47170 * 295.93305 * 1 2 3 30 30 H 1.09000 * 109.47022 * 55.93887 * 1 2 3 31 31 H 1.08995 * 109.47202 * 239.99877 * 2 1 3 32 32 H 1.08998 * 109.47134 * 119.99907 * 2 1 3 33 33 H 1.09005 * 109.47213 * 304.99901 * 5 3 2 34 34 H 1.09009 * 109.47286 * 185.00212 * 5 3 2 35 35 H 1.07995 * 119.99991 * 359.97438 * 7 6 5 36 36 H 1.08002 * 119.99679 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.99928 * 180.02562 * 9 8 7 38 38 H 1.08004 * 120.00041 * 179.72841 * 10 9 8 39 39 H 1.08999 * 109.47225 * 269.92926 * 12 11 6 40 40 H 1.08997 * 109.47228 * 29.93504 * 12 11 6 41 41 H 1.09007 * 109.46752 * 149.93211 * 12 11 6 42 42 H 1.09003 * 109.47042 * 304.90568 * 16 15 13 43 43 H 1.09000 * 109.47021 * 64.90429 * 16 15 13 44 44 H 0.97001 * 120.00365 * 185.01400 * 21 20 18 45 45 H 1.08991 * 117.49936 * 0.02562 * 26 17 16 46 46 H 1.09003 * 117.49339 * 145.01998 * 26 17 16 47 47 H 1.09008 * 117.49818 * 214.97939 * 27 17 16 48 48 H 1.08993 * 117.50070 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9690 -0.8670 5 6 3.5687 1.4430 -0.0621 6 6 4.0182 0.8613 -1.3776 7 6 4.3441 -0.4794 -1.4653 8 6 4.7559 -1.0131 -2.6720 9 6 4.8412 -0.2063 -3.7914 10 6 4.5144 1.1338 -3.7041 11 6 4.1023 1.6676 -2.4970 12 6 3.7460 3.1288 -2.4017 13 6 1.5882 2.1350 1.2600 14 8 2.3805 2.3568 2.1448 15 8 0.3056 2.5055 1.3991 16 6 -0.0833 3.0660 2.6810 17 6 -1.5932 3.3125 2.6929 18 6 -2.1214 4.1652 1.5683 19 1 -3.1059 3.9784 1.1654 20 6 -1.3480 5.1840 1.0538 21 7 -0.1541 5.4194 1.5526 22 14 -1.9957 6.2300 -0.3519 23 1 -2.6231 7.4600 0.1947 24 1 -0.8729 6.6038 -1.2491 25 1 -3.0061 5.4577 -1.1188 26 6 -2.2780 3.4366 4.0555 27 6 -2.4894 2.1825 3.2037 28 1 -0.3632 -1.0251 -0.0729 29 1 -0.3633 0.4494 0.9241 30 1 -0.3633 0.5756 -0.8514 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.9658 0.8417 0.7557 34 1 3.9357 2.4656 0.0274 35 1 4.2770 -1.1097 -0.5909 36 1 5.0109 -2.0603 -2.7403 37 1 5.1626 -0.6234 -4.7344 38 1 4.5853 1.7650 -4.5776 39 1 2.6847 3.2585 -2.6137 40 1 3.9628 3.4908 -1.3967 41 1 4.3329 3.6938 -3.1259 42 1 0.1772 2.3681 3.4767 43 1 0.4401 4.0089 2.8390 44 1 0.3603 6.1805 1.2411 45 1 -1.6528 3.3432 4.9433 46 1 -3.1108 4.1350 4.1383 47 1 -3.4614 2.0561 2.7265 48 1 -2.0034 1.2634 3.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820139189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -56.910395 kcal Electronic energy + Delta-G solvation = -27308.597075 eV Core-core repulsion = 23714.635446 eV Total energy + Delta-G solvation = -3593.961629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13738 -39.23160 -36.85722 -35.43283 -34.86259 -32.96113 -32.17982 -31.71314 -28.89855 -27.05384 -26.51277 -25.42733 -24.35191 -22.38809 -21.90374 -21.26219 -20.65101 -19.19382 -19.10800 -17.04358 -16.61248 -16.19367 -15.80659 -15.46558 -15.25445 -14.83954 -14.59094 -14.06689 -13.88569 -13.39506 -13.34933 -13.16028 -13.08187 -12.96427 -12.71038 -12.26827 -12.16197 -11.97105 -11.81845 -11.54850 -11.34563 -11.04439 -11.01698 -10.95641 -10.85631 -10.76260 -10.63259 -10.49457 -10.46912 -10.33326 -9.83297 -9.39571 -9.27035 -8.98345 -8.80386 -8.77417 -8.56784 -8.20464 -5.98715 -4.11386 1.31662 1.35315 3.09313 3.25484 3.33458 3.37017 3.56298 3.80556 4.35231 4.76503 4.78389 4.93064 4.94444 4.98054 5.02814 5.11119 5.29104 5.29777 5.40424 5.50366 5.61099 5.65144 5.72026 5.76365 5.82651 5.85664 5.88121 6.01530 6.06829 6.09393 6.16523 6.19800 6.23141 6.32312 6.43344 6.45841 6.46610 6.50515 6.63537 6.64932 6.71291 6.77846 6.82921 6.99363 7.01213 7.23743 7.49701 7.68347 7.92586 8.33232 8.75777 8.89025 9.50623 10.96548 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.004075 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.825976 B = 6868.849129 C = 7824.689196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.075 4.075 4 H 0.102 0.898 5 C -0.068 4.068 6 C -0.075 4.075 7 C -0.110 4.110 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.121 4.121 11 C -0.077 4.077 12 C -0.124 4.124 13 C 0.461 3.539 14 O -0.531 6.531 15 O -0.313 6.313 16 C 0.117 3.883 17 C 0.049 3.951 18 C -0.478 4.478 19 H 0.061 0.939 20 C 0.075 3.925 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.198 4.198 27 C -0.210 4.210 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.118 0.882 44 H 0.261 0.739 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -10.293 -8.152 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.095 4.095 4 H 0.120 0.880 5 C -0.105 4.105 6 C -0.075 4.075 7 C -0.128 4.128 8 C -0.146 4.146 9 C -0.142 4.142 10 C -0.139 4.139 11 C -0.077 4.077 12 C -0.181 4.181 13 C 0.304 3.696 14 O -0.422 6.422 15 O -0.227 6.227 16 C 0.044 3.956 17 C 0.048 3.952 18 C -0.515 4.515 19 H 0.079 0.921 20 C -0.128 4.128 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.236 4.236 27 C -0.247 4.247 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.136 0.864 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.068 -10.094 -7.951 15.727 hybrid contribution -0.310 0.608 -0.555 0.880 sum 8.758 -9.486 -8.506 15.461 Atomic orbital electron populations 1.21886 0.94352 1.01063 1.04203 1.21521 0.97250 0.93649 1.02449 1.20990 0.95441 0.97292 0.95734 0.88037 1.20499 0.93385 1.02620 0.94042 1.19721 0.99178 0.93654 0.94903 1.21065 0.99310 0.94560 0.97882 1.21079 1.00834 0.99621 0.93054 1.21076 1.00701 0.93994 0.98399 1.21010 1.00357 0.95419 0.97086 1.19837 0.98656 0.96269 0.92944 1.20938 1.02246 0.91619 1.03277 1.23260 0.81960 0.76024 0.88355 1.90563 1.55092 1.53293 1.43275 1.86506 1.25820 1.70614 1.39714 1.22861 0.95873 0.98321 0.78524 1.18928 0.88447 0.94965 0.92852 1.20470 1.01262 1.14244 1.15532 0.92080 1.24928 0.94219 0.97251 0.96360 1.69776 1.10745 1.28134 1.43430 0.86510 0.78547 0.80396 0.82210 1.20734 1.21080 1.19719 1.22988 1.04213 1.00440 0.95914 1.22951 1.02491 0.92200 1.07089 0.93187 0.90861 0.92154 0.90690 0.91913 0.90111 0.89812 0.86029 0.86352 0.86436 0.86275 0.90643 0.90772 0.91692 0.96391 0.86438 0.92837 0.91498 0.89865 0.90390 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.36 37.16 0.35 -2.02 16 2 C -0.11 -1.55 5.14 -26.73 -0.14 -1.69 16 3 C -0.08 -1.21 2.33 -91.77 -0.21 -1.42 16 4 H 0.10 1.65 7.93 -51.93 -0.41 1.24 16 5 C -0.07 -0.98 3.64 -27.89 -0.10 -1.08 16 6 C -0.07 -0.94 4.56 -104.63 -0.48 -1.42 16 7 C -0.11 -1.24 8.29 -39.58 -0.33 -1.57 16 8 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 9 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 10 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 11 C -0.08 -0.95 5.88 -104.62 -0.62 -1.56 16 12 C -0.12 -1.50 9.39 36.01 0.34 -1.16 16 13 C 0.46 9.59 6.82 36.01 0.25 9.83 16 14 O -0.53 -12.17 15.81 -18.75 -0.30 -12.47 16 15 O -0.31 -7.29 7.76 -39.27 -0.30 -7.59 16 16 C 0.12 2.88 4.37 37.15 0.16 3.05 16 17 C 0.05 1.19 2.20 -155.66 -0.34 0.85 16 18 C -0.48 -12.74 8.82 -34.44 -0.30 -13.04 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.07 1.98 5.29 -17.82 -0.09 1.89 16 21 N -0.88 -24.07 10.21 55.43 0.57 -23.50 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 27 C -0.21 -4.51 9.93 -26.69 -0.26 -4.77 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.30 6.25 -51.93 -0.32 0.97 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.14 8.01 -51.93 -0.42 0.73 16 34 H 0.08 1.27 6.16 -51.92 -0.32 0.95 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.95 6.03 -51.93 -0.31 0.64 16 41 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 43 H 0.12 3.22 5.88 -51.93 -0.31 2.91 16 44 H 0.26 6.87 8.32 -40.82 -0.34 6.54 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 47 H 0.08 1.63 8.14 -51.92 -0.42 1.20 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -28.93 386.64 -10.34 -39.27 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.88 Total: 6.59 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.23 Total: -23.79 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.57 Total: -23.50 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.60 Total: -20.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.93 -10.34 -39.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820139189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.640 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds