Wall clock time and date at job start Tue Mar 31 2020 11:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46759 * 2 1 4 4 C 1.53000 * 109.47454 * 239.99966 * 2 1 3 5 5 C 1.52994 * 109.47011 * 119.99271 * 2 1 3 6 6 N 1.46904 * 109.47156 * 54.17116 * 5 2 1 7 7 C 1.46897 * 110.99986 * 199.78694 * 6 5 2 8 8 C 1.50699 * 109.47271 * 69.10222 * 7 6 5 9 9 H 1.07994 * 120.00067 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99712 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00157 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99711 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47169 * 59.99609 * 12 10 8 14 14 H 1.48499 * 109.47085 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47257 * 299.99660 * 12 10 8 16 16 C 1.38791 * 110.99925 * 75.83153 * 6 5 2 17 17 N 1.32327 * 119.78737 * 38.92249 * 16 6 5 18 18 C 1.31953 * 121.74416 * 179.70899 * 17 16 6 19 19 C 1.38170 * 121.11846 * 0.57085 * 18 17 16 20 20 C 1.38597 * 119.44464 * 359.72733 * 19 18 17 21 21 C 1.39473 * 118.39949 * 359.97438 * 20 19 18 22 22 C 1.48359 * 120.56643 * 179.97438 * 21 20 19 23 23 N 1.34079 * 126.67478 * 183.92435 * 22 21 20 24 24 N 1.28987 * 107.26412 * 179.89062 * 23 22 21 25 25 N 1.28733 * 108.95314 * 0.37304 * 24 23 22 26 26 H 0.96996 * 125.33345 * 179.77482 * 25 24 23 27 27 N 1.28876 * 109.32455 * 359.76679 * 25 24 23 28 28 H 1.08997 * 109.47101 * 300.00456 * 1 2 3 29 29 H 1.08997 * 109.47103 * 60.00423 * 1 2 3 30 30 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46967 * 299.99659 * 3 2 1 33 33 H 1.08993 * 109.47463 * 59.99449 * 3 2 1 34 34 H 1.08994 * 109.46692 * 307.45037 * 4 2 1 35 35 H 1.08998 * 109.46770 * 67.45452 * 4 2 1 36 36 H 1.08999 * 109.46958 * 187.45262 * 4 2 1 37 37 H 1.09004 * 109.47475 * 294.16718 * 5 2 1 38 38 H 1.09000 * 109.47116 * 174.17139 * 5 2 1 39 39 H 1.09005 * 109.46707 * 189.10169 * 7 6 5 40 40 H 1.09006 * 109.47144 * 309.09760 * 7 6 5 41 41 H 0.97005 * 119.99582 * 180.02562 * 11 10 8 42 42 H 1.08005 * 119.44492 * 180.29422 * 18 17 16 43 43 H 1.07995 * 120.28262 * 179.73897 * 19 18 17 44 44 H 1.07997 * 120.80234 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 7 1.4388 -2.0595 1.3219 7 6 1.5114 -2.5959 2.6875 8 6 0.5894 -1.8114 3.5850 9 1 0.0080 -0.9957 3.1814 10 6 0.4890 -2.1345 4.9217 11 7 1.1974 -3.1275 5.4132 12 14 -0.6533 -1.1616 6.0344 13 1 -2.0465 -1.2731 5.5326 14 1 -0.5799 -1.7039 7.4148 15 1 -0.2420 0.2653 6.0401 16 6 2.0376 -2.9235 0.4156 17 7 3.3444 -2.8643 0.2158 18 6 3.9543 -3.6706 -0.6321 19 6 3.2474 -4.6086 -1.3599 20 6 1.8751 -4.7080 -1.1923 21 6 1.2536 -3.8493 -0.2860 22 6 -0.2127 -3.9138 -0.0694 23 7 -0.9434 -3.1046 0.7110 24 7 -2.1703 -3.4925 0.6222 25 7 -2.2321 -4.5064 -0.1685 26 1 -3.0414 -4.9878 -0.4014 27 7 -1.0502 -4.7815 -0.6024 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5721 -1.7031 -1.3183 35 1 1.7897 -0.1362 -2.1341 36 1 3.1219 -0.8381 -1.1850 37 1 1.7644 -0.1504 2.1362 38 1 3.1250 -0.8124 1.1987 39 1 1.2097 -3.6433 2.6829 40 1 2.5340 -2.5140 3.0561 41 1 1.1265 -3.3550 6.3535 42 1 5.0236 -3.5932 -0.7628 43 1 3.7597 -5.2589 -2.0533 44 1 1.3011 -5.4335 -1.7495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824086063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:55 Heat of formation + Delta-G solvation = 178.958859 kcal Electronic energy + Delta-G solvation = -28279.151302 eV Core-core repulsion = 24656.462890 eV Total energy + Delta-G solvation = -3622.688412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.88383 -40.37939 -37.45888 -34.78166 -33.99746 -33.37792 -32.49554 -31.28825 -29.83189 -27.06219 -26.68278 -26.55947 -25.22025 -24.58705 -23.84413 -22.60197 -21.55789 -20.65583 -18.82851 -18.37712 -16.71256 -16.60750 -16.23485 -15.94104 -15.67674 -14.96771 -14.28900 -14.21220 -13.87836 -13.58941 -13.45928 -13.24008 -12.88693 -12.57681 -12.26721 -12.13520 -11.87039 -11.82345 -11.55108 -11.33783 -11.13877 -10.91882 -10.85821 -10.78004 -10.66742 -10.61314 -10.50028 -10.09210 -10.07504 -9.94219 -9.79423 -9.49819 -9.29088 -9.05477 -8.41830 -8.29254 -7.29184 -5.94100 -3.92846 0.95738 1.53310 1.72102 2.66695 2.89654 3.41168 3.44088 3.48594 4.08600 4.15471 4.39519 4.59110 4.69046 4.91084 5.09671 5.31138 5.41277 5.42486 5.44432 5.45108 5.60312 5.75949 5.91902 5.99853 6.02868 6.10571 6.15633 6.20178 6.25354 6.35248 6.36570 6.48707 6.51309 6.55554 6.70140 6.75967 6.81358 6.89280 6.98486 7.24763 7.29827 7.35996 7.90081 7.99966 8.18496 8.37365 8.59294 8.76512 9.13442 9.69208 11.17157 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.006482 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.375774 B = 4318.329774 C = 5017.710785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.070 3.930 6 N -0.466 5.466 7 C 0.215 3.785 8 C -0.488 4.488 9 H 0.069 0.931 10 C 0.054 3.946 11 N -0.903 5.903 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.376 3.624 17 N -0.516 5.516 18 C 0.132 3.868 19 C -0.210 4.210 20 C -0.033 4.033 21 C -0.072 4.072 22 C 0.227 3.773 23 N -0.185 5.185 24 N -0.065 5.065 25 N -0.245 5.245 26 H 0.467 0.533 27 N -0.314 5.314 28 H 0.052 0.948 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.024 0.976 40 H 0.002 0.998 41 H 0.260 0.740 42 H 0.152 0.848 43 H 0.134 0.866 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -1.666 -15.821 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.058 4.058 6 N -0.186 5.186 7 C 0.093 3.907 8 C -0.527 4.527 9 H 0.087 0.913 10 C -0.146 4.146 11 N -0.543 5.543 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.217 1.217 15 H -0.203 1.203 16 C 0.144 3.856 17 N -0.229 5.229 18 C -0.028 4.028 19 C -0.230 4.230 20 C -0.061 4.061 21 C -0.079 4.079 22 C -0.053 4.053 23 N -0.058 5.058 24 N -0.060 5.060 25 N -0.088 5.088 26 H 0.319 0.681 27 N -0.167 5.167 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.020 0.980 41 H 0.069 0.931 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.647 -0.876 -14.962 15.001 hybrid contribution -0.401 -0.882 0.079 0.972 sum -1.048 -1.758 -14.883 15.023 Atomic orbital electron populations 1.21802 0.93978 1.03764 0.99435 1.20539 0.96558 0.94261 0.95091 1.21805 1.00437 0.95963 1.01167 1.22080 1.00624 1.00192 0.96899 1.22160 0.97042 0.88874 0.97710 1.60117 1.49516 1.00753 1.08211 1.19679 0.96374 0.95547 0.79079 1.21008 1.23567 1.16002 0.92109 0.91272 1.24940 0.96128 0.95465 0.98089 1.69962 1.41326 1.28960 1.14032 0.86579 0.81536 0.80132 0.79289 1.20132 1.21677 1.20280 1.20205 0.85980 0.88621 0.90776 1.68053 1.10479 1.25969 1.18375 1.22676 1.00068 0.89926 0.90127 1.21828 0.94317 1.02525 1.04359 1.21446 0.94670 0.95614 0.94342 1.17862 0.86610 1.01828 1.01644 1.23199 0.95503 0.91175 0.95401 1.76688 0.93839 1.20361 1.14888 1.79114 1.17053 1.00779 1.09098 1.47686 1.08562 1.22426 1.30152 0.68058 1.74766 0.91888 1.25411 1.24633 0.92903 0.95357 0.89971 0.93200 0.93416 0.92590 0.92846 0.94089 0.92834 0.89262 0.93129 0.95838 0.97980 0.93072 0.83112 0.84838 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.25 37.16 0.31 -2.03 16 2 C -0.06 -1.08 0.85 -154.51 -0.13 -1.21 16 3 C -0.14 -1.97 8.47 37.16 0.31 -1.66 16 4 C -0.14 -2.23 7.10 37.16 0.26 -1.97 16 5 C 0.07 1.38 3.91 -3.82 -0.01 1.37 16 6 N -0.47 -9.96 1.65 -174.32 -0.29 -10.25 16 7 C 0.22 5.61 4.54 -4.98 -0.02 5.58 16 8 C -0.49 -13.48 8.28 -34.44 -0.29 -13.77 16 9 H 0.07 1.90 7.52 -52.49 -0.39 1.51 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 12 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.38 7.26 2.93 -154.91 -0.45 6.80 16 17 N -0.52 -9.17 7.59 -12.22 -0.09 -9.27 16 18 C 0.13 1.82 11.16 -17.52 -0.20 1.63 16 19 C -0.21 -2.55 10.09 -39.47 -0.40 -2.95 16 20 C -0.03 -0.46 9.83 -38.99 -0.38 -0.84 16 21 C -0.07 -1.27 4.92 -104.56 -0.51 -1.78 16 22 C 0.23 4.18 7.90 -156.29 -1.24 2.94 16 23 N -0.19 -3.76 8.91 32.14 0.29 -3.47 16 24 N -0.06 -1.14 13.47 60.35 0.81 -0.33 16 25 N -0.25 -3.29 7.90 60.35 0.48 -2.82 16 26 H 0.47 3.74 8.96 -340.36 -3.05 0.69 16 27 N -0.31 -4.85 12.16 32.16 0.39 -4.46 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.60 5.37 -51.93 -0.28 1.32 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.91 5.12 -51.93 -0.27 0.65 16 35 H 0.04 0.59 8.13 -51.93 -0.42 0.16 16 36 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 37 H 0.09 1.94 6.82 -51.93 -0.35 1.58 16 38 H 0.05 1.02 6.97 -51.93 -0.36 0.66 16 39 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 40 H 0.00 0.07 8.09 -51.93 -0.42 -0.35 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.14 1.63 7.96 -52.49 -0.42 1.21 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -32.69 354.96 -9.05 -41.75 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.86 Total: -0.80 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.85 Total: -6.43 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 2.32 Total: -56.89 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.69 -9.05 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824086063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.704 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds