Wall clock time and date at job start Tue Mar 31 2020 11:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46796 * 2 1 4 4 C 1.52996 * 109.47651 * 239.99942 * 2 1 3 5 5 C 1.53002 * 109.47200 * 119.99321 * 2 1 3 6 6 N 1.46500 * 109.46950 * 56.21563 * 5 2 1 7 7 C 1.46498 * 119.99913 * 90.96566 * 6 5 2 8 8 C 1.50700 * 109.47051 * 90.89931 * 7 6 5 9 9 H 1.08004 * 119.99947 * 4.05291 * 8 7 6 10 10 C 1.37882 * 120.00211 * 184.04431 * 8 7 6 11 11 N 1.31514 * 119.99733 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99974 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46866 * 60.00650 * 12 10 8 14 14 H 1.48502 * 109.46877 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47059 * 300.00544 * 12 10 8 16 16 C 1.38916 * 120.00173 * 271.24520 * 6 5 2 17 17 C 1.39237 * 119.57695 * 348.94280 * 16 6 5 18 18 C 1.38061 * 119.21473 * 179.97438 * 17 16 6 19 19 C 1.39946 * 118.40584 * 0.02562 * 18 17 16 20 20 C 1.48427 * 120.45036 * 179.97438 * 19 18 17 21 21 N 1.34061 * 126.67339 * 359.67326 * 20 19 18 22 22 N 1.28989 * 107.26387 * 179.89951 * 21 20 19 23 23 N 1.28726 * 108.94789 * 0.37887 * 22 21 20 24 24 H 0.97001 * 125.33782 * 179.76115 * 23 22 21 25 25 N 1.28869 * 109.32137 * 359.76233 * 23 22 21 26 26 C 1.39122 * 119.09650 * 359.97438 * 19 18 17 27 27 N 1.31815 * 120.69353 * 359.74742 * 26 19 18 28 28 H 1.08996 * 109.47638 * 295.25946 * 1 2 3 29 29 H 1.09003 * 109.47256 * 55.26764 * 1 2 3 30 30 H 1.09007 * 109.46752 * 175.26064 * 1 2 3 31 31 H 1.09002 * 109.47131 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46572 * 299.99801 * 3 2 1 33 33 H 1.08993 * 109.47506 * 59.99570 * 3 2 1 34 34 H 1.09001 * 109.46794 * 299.99870 * 4 2 1 35 35 H 1.08996 * 109.47441 * 59.99310 * 4 2 1 36 36 H 1.08990 * 109.47460 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47364 * 296.21695 * 5 2 1 38 38 H 1.09000 * 109.46907 * 176.21806 * 5 2 1 39 39 H 1.09001 * 109.47524 * 210.90331 * 7 6 5 40 40 H 1.08999 * 109.47200 * 330.90422 * 7 6 5 41 41 H 0.96995 * 119.99890 * 180.02562 * 11 10 8 42 42 H 1.07997 * 120.39071 * 0.02562 * 17 16 6 43 43 H 1.07998 * 120.79653 * 179.97438 * 18 17 16 44 44 H 1.08004 * 119.65106 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 7 1.4786 -2.0735 1.2959 7 6 2.2025 -3.1886 0.6805 8 6 3.1103 -3.8232 1.7023 9 1 3.0968 -3.4775 2.7254 10 6 3.9580 -4.8453 1.3312 11 7 3.9747 -5.2661 0.0852 12 14 5.0828 -5.6324 2.5980 13 1 4.2645 -6.2229 3.6875 14 1 5.8886 -6.6984 1.9501 15 1 5.9898 -4.6014 3.1633 16 6 0.2572 -2.2975 1.9186 17 6 -0.3149 -1.2907 2.6917 18 6 -1.5293 -1.5212 3.3067 19 6 -2.1405 -2.7673 3.1273 20 6 -3.4461 -3.0640 3.7681 21 7 -4.1587 -2.2419 4.5515 22 7 -5.2265 -2.8758 4.9005 23 7 -5.2042 -4.0518 4.3774 24 1 -5.8902 -4.7285 4.4888 25 7 -4.1276 -4.1891 3.6826 26 6 -1.5078 -3.7241 2.3402 27 7 -0.3507 -3.4640 1.7649 28 1 -0.3634 0.4385 0.9293 29 1 -0.3634 0.5855 -0.8446 30 1 -0.3633 -1.0242 -0.0849 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 1.7331 -0.1695 2.1380 38 1 3.1279 -0.7802 1.2161 39 1 1.4893 -3.9291 0.3183 40 1 2.7977 -2.8188 -0.1544 41 1 4.5708 -5.9853 -0.1758 42 1 0.1849 -0.3405 2.8081 43 1 -1.9959 -0.7585 3.9125 44 1 -1.9717 -4.6887 2.1954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824087633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:58 Heat of formation + Delta-G solvation = 160.805530 kcal Electronic energy + Delta-G solvation = -26580.987725 eV Core-core repulsion = 22957.512125 eV Total energy + Delta-G solvation = -3623.475599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.28743 -40.00000 -37.84754 -34.88684 -34.15052 -33.31848 -32.46995 -31.81953 -29.70495 -27.69522 -27.05317 -26.80334 -25.66087 -24.64583 -23.77615 -22.91835 -21.89112 -20.63185 -19.05400 -18.61752 -16.99952 -16.99465 -16.50731 -16.01061 -15.65061 -14.86776 -14.60464 -14.54324 -14.09895 -13.87094 -13.52263 -13.35465 -13.02606 -12.65819 -12.41715 -12.25438 -12.14868 -12.03995 -11.80182 -11.46802 -11.33962 -11.26454 -11.21529 -11.09750 -10.97327 -10.89547 -10.81608 -10.58002 -10.39616 -10.20204 -10.10944 -9.70672 -9.31890 -8.92923 -8.73260 -8.41564 -6.80597 -6.02448 -4.09542 1.04380 1.41721 1.81738 2.34431 2.70683 3.30493 3.35082 3.37954 3.69385 3.97423 4.38989 4.39594 4.45968 4.97619 5.06104 5.12327 5.17573 5.28138 5.29742 5.48981 5.54429 5.57919 5.69510 5.72816 5.76404 5.80501 5.96949 6.01319 6.12046 6.14484 6.18730 6.28018 6.35575 6.39876 6.42966 6.43609 6.58927 6.63454 6.72231 6.86822 7.13303 7.48327 7.79337 7.92979 8.22980 8.24454 8.28709 8.77038 8.96748 9.54801 11.02052 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.004365 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.326991 B = 6412.826040 C = 8414.145987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.131 3.869 6 N -0.571 5.571 7 C 0.246 3.754 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.443 3.557 17 C -0.258 4.258 18 C 0.007 3.993 19 C -0.177 4.177 20 C 0.255 3.745 21 N -0.282 5.282 22 N -0.060 5.060 23 N -0.235 5.235 24 H 0.472 0.528 25 N -0.310 5.310 26 C 0.205 3.795 27 N -0.526 5.526 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 8.568 2.960 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.199 4.199 5 C 0.007 3.993 6 N -0.275 5.275 7 C 0.127 3.873 8 C -0.565 4.565 9 H 0.073 0.927 10 C -0.138 4.138 11 N -0.533 5.533 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.205 3.795 17 C -0.284 4.284 18 C -0.020 4.020 19 C -0.188 4.188 20 C -0.024 4.024 21 N -0.155 5.155 22 N -0.055 5.055 23 N -0.080 5.080 24 H 0.325 0.675 25 N -0.161 5.161 26 C 0.039 3.961 27 N -0.242 5.242 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.100 7.997 2.551 14.726 hybrid contribution 0.194 -0.529 1.064 1.204 sum -11.906 7.468 3.615 14.512 Atomic orbital electron populations 1.21944 0.94631 1.01949 1.01077 1.21034 0.96007 0.95099 0.96705 1.21804 1.01043 0.95216 1.01421 1.21943 1.00982 1.01260 0.95676 1.21560 0.99136 0.82338 0.96298 1.47235 1.16266 1.08836 1.55147 1.19493 0.91424 0.83258 0.93100 1.21441 1.21072 1.18124 0.95893 0.92719 1.24882 0.97077 0.96559 0.95300 1.69912 1.38603 1.28413 1.16329 0.86626 0.80589 0.79005 0.81582 1.20286 1.21227 1.20349 1.18562 0.86012 0.88432 0.86512 1.21357 0.99158 1.01884 1.05983 1.21083 0.92680 0.94507 0.93682 1.17781 0.92763 0.98162 1.10074 1.23567 0.96853 0.85797 0.96226 1.76041 1.00012 1.25456 1.14027 1.78813 1.17011 0.92972 1.16716 1.47649 1.16503 1.12908 1.30957 0.67518 1.74964 0.98079 1.25044 1.18045 1.22488 0.88513 0.97178 0.87883 1.67478 1.09966 1.20858 1.25933 0.92560 0.93432 0.92446 0.92550 0.92762 0.92841 0.91277 0.93637 0.92593 0.91411 0.89735 0.93264 0.94214 0.92717 0.84928 0.84857 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.04 37.16 0.26 -1.62 16 2 C -0.09 -1.19 0.85 -154.51 -0.13 -1.32 16 3 C -0.14 -1.52 8.47 37.16 0.31 -1.20 16 4 C -0.14 -2.15 7.42 37.16 0.28 -1.87 16 5 C 0.13 2.08 4.53 -4.04 -0.02 2.06 16 6 N -0.57 -11.20 2.08 -175.19 -0.37 -11.57 16 7 C 0.25 5.95 4.26 -5.19 -0.02 5.93 16 8 C -0.53 -14.19 9.39 -34.44 -0.32 -14.52 16 9 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.44 8.41 5.60 -155.04 -0.87 7.54 16 17 C -0.26 -4.05 7.37 -39.28 -0.29 -4.34 16 18 C 0.01 0.11 9.82 -39.01 -0.38 -0.27 16 19 C -0.18 -2.80 5.89 -104.73 -0.62 -3.42 16 20 C 0.25 3.79 7.95 -156.30 -1.24 2.55 16 21 N -0.28 -4.13 12.30 32.15 0.40 -3.73 16 22 N -0.06 -0.74 13.47 60.35 0.81 0.07 16 23 N -0.23 -2.34 7.90 60.35 0.48 -1.87 16 24 H 0.47 2.29 8.96 -340.37 -3.05 -0.76 16 25 N -0.31 -4.06 12.10 32.17 0.39 -3.67 16 26 C 0.20 3.53 10.86 -17.23 -0.19 3.35 16 27 N -0.53 -10.67 9.06 -12.18 -0.11 -10.78 16 28 H 0.06 0.71 6.45 -51.93 -0.33 0.37 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.24 6.00 -51.93 -0.31 0.93 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.95 5.87 -51.93 -0.30 0.64 16 38 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 39 H 0.05 1.33 7.25 -51.93 -0.38 0.95 16 40 H 0.04 0.99 6.15 -51.93 -0.32 0.67 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.13 1.80 5.42 -52.49 -0.28 1.52 16 43 H 0.13 1.71 7.96 -52.49 -0.42 1.29 16 44 H 0.15 2.40 7.88 -52.48 -0.41 1.99 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -31.21 357.55 -9.28 -40.50 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.66 Total: -0.43 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -3.33 Total: -5.48 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 2.33 Total: -56.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.21 -9.28 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824087633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.302 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds