Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 C 1.50691 * 109.47442 * 239.99824 * 2 1 3 5 5 H 1.08011 * 119.99956 * 236.86439 * 4 2 1 6 6 C 1.37882 * 120.00324 * 56.86229 * 4 2 1 7 7 N 1.31509 * 119.99577 * 5.81909 * 6 4 2 8 8 Si 1.86798 * 120.00178 * 185.81792 * 6 4 2 9 9 H 1.48508 * 109.46816 * 85.02557 * 8 6 4 10 10 H 1.48498 * 109.47258 * 205.02277 * 8 6 4 11 11 H 1.48494 * 109.47192 * 325.02866 * 8 6 4 12 12 C 1.53006 * 109.46975 * 119.99667 * 2 1 3 13 13 O 1.45202 * 109.47190 * 300.00188 * 12 2 1 14 14 C 1.34225 * 117.00459 * 179.97438 * 13 12 2 15 15 O 1.20825 * 119.99505 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00630 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.01506 * 301.39366 * 16 14 13 18 18 C 1.53872 * 110.07081 * 62.80678 * 16 14 13 19 19 C 1.54267 * 106.59766 * 119.31144 * 18 16 14 20 20 C 1.55031 * 104.27960 * 23.51726 * 19 18 16 21 21 C 1.54261 * 110.03415 * 180.02562 * 16 14 13 22 22 H 1.08992 * 110.48840 * 335.86904 * 21 16 14 23 23 C 1.50703 * 110.48588 * 98.37817 * 21 16 14 24 24 C 1.38227 * 120.00089 * 238.15494 * 23 21 16 25 25 C 1.38241 * 120.00104 * 180.25627 * 24 23 21 26 26 C 1.38236 * 119.99645 * 359.51208 * 25 24 23 27 27 C 1.38233 * 119.99851 * 0.46802 * 26 25 24 28 28 C 1.38229 * 120.00395 * 359.76698 * 27 26 25 29 29 H 1.08997 * 109.47614 * 293.83344 * 1 2 3 30 30 H 1.09003 * 109.47131 * 53.83158 * 1 2 3 31 31 H 1.08996 * 109.46946 * 173.82840 * 1 2 3 32 32 H 1.09007 * 109.46895 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46990 * 299.99689 * 3 2 1 34 34 H 1.09004 * 109.47202 * 59.99990 * 3 2 1 35 35 H 0.96999 * 119.99873 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47094 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47090 * 60.00119 * 12 2 1 38 38 H 1.08996 * 110.03799 * 238.59503 * 18 16 14 39 39 H 1.09003 * 110.03601 * 359.97438 * 18 16 14 40 40 H 1.08999 * 110.49305 * 142.29266 * 19 18 16 41 41 H 1.09003 * 110.48775 * 264.80276 * 19 18 16 42 42 H 1.09000 * 110.87687 * 203.90477 * 20 19 18 43 43 H 1.09001 * 110.69731 * 80.48586 * 20 19 18 44 44 H 1.08004 * 119.99853 * 359.97438 * 24 23 21 45 45 H 1.08005 * 119.99830 * 179.73363 * 25 24 23 46 46 H 1.07998 * 119.99610 * 180.25600 * 26 25 24 47 47 H 1.08005 * 119.99595 * 179.78426 * 27 26 25 48 48 H 1.07999 * 120.00097 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6945 -1.5581 -1.1320 6 6 1.6468 -0.2784 -2.4817 7 7 0.9350 0.8203 -2.6075 8 14 2.1356 -1.2535 -3.9981 9 1 1.1499 -2.3405 -4.2266 10 1 2.1618 -0.3529 -5.1786 11 1 3.4835 -1.8424 -3.7947 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4349 14 6 1.9160 -0.5469 3.6230 15 8 2.6131 -1.5327 3.6708 16 6 1.4520 0.1103 4.8972 17 1 1.7912 1.1457 4.9279 18 6 -0.0829 0.0554 4.9911 19 6 -0.4180 -0.7467 6.2655 20 6 0.8450 -0.6006 7.1525 21 6 1.9966 -0.6601 6.1178 22 1 2.2157 -1.6936 5.8499 23 6 3.2295 0.0154 6.6606 24 6 4.4202 -0.6819 6.7428 25 6 5.5499 -0.0639 7.2457 26 6 5.4912 1.2546 7.6570 27 6 4.3006 1.9520 7.5744 28 6 3.1698 1.3326 7.0761 29 1 -0.3634 0.4152 0.9400 30 1 -0.3633 0.6065 -0.8296 31 1 -0.3633 -1.0217 -0.1105 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6641 1.1244 -3.4878 36 1 3.1299 -0.7208 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 -0.4887 1.0641 5.0674 39 1 -0.4929 -0.4463 4.1146 40 1 -1.2879 -0.3217 6.7662 41 1 -0.5936 -1.7945 6.0217 42 1 0.9195 -1.4254 7.8612 43 1 0.8421 0.3576 7.6722 44 1 4.4668 -1.7110 6.4184 45 1 6.4791 -0.6101 7.3139 46 1 6.3748 1.7386 8.0460 47 1 4.2540 2.9811 7.8990 48 1 2.2395 1.8774 7.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -88.858966 kcal Electronic energy + Delta-G solvation = -26850.569362 eV Core-core repulsion = 23255.222338 eV Total energy + Delta-G solvation = -3595.347023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.60170 -39.30582 -37.52411 -36.30036 -34.80169 -31.96650 -31.28262 -30.97437 -29.63515 -27.63106 -25.70818 -25.61216 -25.07001 -23.10050 -22.62128 -21.56831 -20.55909 -19.34677 -18.80990 -17.48074 -16.91456 -16.23240 -15.88842 -15.71681 -15.33526 -14.92552 -14.75690 -14.52705 -14.21081 -13.54781 -13.22294 -13.20831 -13.05090 -12.95126 -12.72858 -12.21953 -11.96027 -11.66585 -11.53774 -11.39849 -11.33618 -11.22205 -11.15229 -10.93669 -10.86259 -10.77548 -10.70046 -10.63955 -10.40162 -10.19651 -9.90610 -9.86194 -9.38770 -9.29075 -8.98586 -8.75797 -8.73915 -8.36100 -6.01964 -4.12117 1.25789 1.33262 2.66723 3.23623 3.28662 3.35058 3.39730 3.66934 4.33264 4.38893 4.47531 4.64650 4.84592 4.90317 4.96647 5.05685 5.22680 5.24874 5.27886 5.35590 5.39471 5.44266 5.47223 5.53375 5.60533 5.77395 5.85357 5.93854 5.95535 6.07257 6.11561 6.12568 6.14650 6.18797 6.39073 6.43536 6.48582 6.60714 6.77805 6.92768 6.99818 7.10390 7.13850 7.18236 7.42028 7.63565 7.71347 8.04325 8.16387 8.30230 8.40857 8.87486 9.52901 10.99916 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.003101 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.427248 B = 9028.417430 C = 9711.220741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.070 3.930 3 C -0.128 4.128 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.084 3.916 13 O -0.347 6.347 14 C 0.459 3.541 15 O -0.518 6.518 16 C -0.080 4.080 17 H 0.108 0.892 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.046 4.046 22 H 0.102 0.898 23 C -0.070 4.070 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.017 0.983 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.084 0.916 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 1.338 21.483 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 C -0.186 4.186 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.132 4.132 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.012 3.988 13 O -0.262 6.262 14 C 0.302 3.698 15 O -0.408 6.408 16 C -0.100 4.100 17 H 0.126 0.874 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.151 4.151 21 C -0.064 4.064 22 H 0.121 0.879 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.083 1.166 21.277 21.337 hybrid contribution 0.534 -0.620 -1.050 1.331 sum 1.617 0.546 20.227 20.299 Atomic orbital electron populations 1.21735 0.97310 0.99743 0.99670 1.18232 0.93367 0.93040 0.88346 1.21782 0.98049 0.98203 1.00563 1.20931 1.29680 1.14686 0.89920 0.92553 1.24849 0.94922 0.94759 0.98709 1.69851 1.37553 1.21174 1.23341 0.86576 0.79009 0.79933 0.82290 1.20551 1.21209 1.19964 1.23637 0.98094 0.95738 0.81361 1.86517 1.69054 1.55791 1.14887 1.23421 0.77389 0.82549 0.86425 1.90587 1.35957 1.26068 1.88193 1.21763 0.97554 1.01125 0.89517 0.87410 1.22104 0.92204 1.01814 0.99030 1.22416 0.97713 1.00681 0.95451 1.22633 0.93246 1.02340 0.96890 1.21038 0.92136 1.00459 0.92793 0.87936 1.19783 0.94758 0.94135 0.98374 1.21149 0.92321 1.00336 0.98735 1.21158 0.98340 0.95209 0.99123 1.21131 0.97869 0.94785 1.00681 1.21108 0.93010 0.99758 1.00008 1.21018 0.98633 0.94507 0.99394 0.96414 0.90166 0.95627 0.95922 0.89755 0.96547 0.92917 0.92715 0.92644 0.90297 0.90499 0.91027 0.91297 0.90970 0.90891 0.85880 0.86193 0.86341 0.86186 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.06 37.16 0.30 -2.76 16 2 C 0.07 1.75 0.58 -155.66 -0.09 1.66 16 3 C -0.13 -3.14 8.14 37.16 0.30 -2.83 16 4 C -0.51 -13.90 8.01 -34.44 -0.28 -14.18 16 5 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 6 C 0.07 1.87 5.13 -17.82 -0.09 1.78 16 7 N -0.88 -24.08 9.46 55.43 0.52 -23.56 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.08 1.91 4.26 37.16 0.16 2.07 16 13 O -0.35 -7.03 8.75 -39.25 -0.34 -7.37 16 14 C 0.46 8.23 7.00 36.00 0.25 8.49 16 15 O -0.52 -10.41 15.15 -18.75 -0.28 -10.70 16 16 C -0.08 -1.06 2.89 -90.66 -0.26 -1.32 16 17 H 0.11 1.35 6.94 -51.93 -0.36 0.99 16 18 C -0.11 -1.28 6.44 -25.61 -0.16 -1.45 16 19 C -0.13 -1.15 6.83 -24.99 -0.17 -1.32 16 20 C -0.11 -1.03 6.29 -24.64 -0.16 -1.18 16 21 C -0.05 -0.54 2.40 -90.09 -0.22 -0.76 16 22 H 0.10 1.39 6.67 -51.93 -0.35 1.04 16 23 C -0.07 -0.84 4.90 -104.62 -0.51 -1.35 16 24 C -0.11 -1.30 9.68 -39.58 -0.38 -1.68 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 27 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 28 C -0.12 -1.24 8.13 -39.58 -0.32 -1.56 16 29 H 0.02 0.38 7.50 -51.93 -0.39 -0.01 16 30 H 0.08 2.08 6.25 -51.93 -0.32 1.76 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.08 2.22 6.11 -51.93 -0.32 1.90 16 34 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.99 7.66 -51.93 -0.40 0.60 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 6.94 -51.93 -0.36 0.23 16 44 H 0.12 1.46 7.97 -52.48 -0.42 1.04 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.12 1.08 7.30 -52.49 -0.38 0.70 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -29.32 379.48 -10.12 -39.44 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.89 Total: 1.86 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.83 Total: -21.35 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.52 Total: -23.56 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.63 Total: -18.07 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.32 -10.12 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.415 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds