Wall clock time and date at job start Tue Mar 31 2020 11:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46733 * 2 1 4 4 C 1.50693 * 109.47595 * 239.99907 * 2 1 3 5 5 H 1.08001 * 119.99986 * 240.00416 * 4 2 1 6 6 C 1.37881 * 120.00039 * 59.99844 * 4 2 1 7 7 N 1.31512 * 120.00029 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99845 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 90.00281 * 8 6 4 10 10 H 1.48505 * 109.46944 * 209.99885 * 8 6 4 11 11 H 1.48502 * 109.47425 * 329.99873 * 8 6 4 12 12 C 1.52996 * 109.46756 * 119.99588 * 2 1 3 13 13 O 1.45199 * 109.47573 * 300.00150 * 12 2 1 14 14 C 1.34226 * 117.00295 * 179.97438 * 13 12 2 15 15 O 1.20825 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00123 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.01709 * 35.49521 * 16 14 13 18 18 C 1.54264 * 110.03510 * 156.89061 * 16 14 13 19 19 C 1.54885 * 104.20055 * 142.94169 * 18 16 14 20 20 C 1.54887 * 102.74933 * 322.06070 * 19 18 16 21 21 C 1.53876 * 110.07267 * 274.08209 * 16 14 13 22 22 H 1.09002 * 110.03324 * 121.40933 * 21 16 14 23 23 C 1.50696 * 110.03388 * 0.02562 * 21 16 14 24 24 C 1.38235 * 120.00282 * 289.18439 * 23 21 16 25 25 C 1.38241 * 119.99821 * 179.74338 * 24 23 21 26 26 C 1.38228 * 119.99753 * 0.54758 * 25 24 23 27 27 C 1.38233 * 120.00501 * 359.70554 * 26 25 24 28 28 C 1.38233 * 119.99771 * 109.45232 * 23 21 16 29 29 H 1.08992 * 109.47557 * 300.00099 * 1 2 3 30 30 H 1.08999 * 109.46454 * 60.00515 * 1 2 3 31 31 H 1.08996 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47096 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47132 * 299.99723 * 3 2 1 34 34 H 1.09000 * 109.47055 * 59.99969 * 3 2 1 35 35 H 0.97000 * 120.00398 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47177 * 180.02562 * 12 2 1 37 37 H 1.09004 * 109.47572 * 60.00353 * 12 2 1 38 38 H 1.09003 * 110.48908 * 261.62458 * 18 16 14 39 39 H 1.08998 * 110.48506 * 24.26345 * 18 16 14 40 40 H 1.09005 * 110.75265 * 80.36998 * 19 18 16 41 41 H 1.08997 * 110.75905 * 203.74266 * 19 18 16 42 42 H 1.09001 * 110.48799 * 279.26442 * 20 19 18 43 43 H 1.08996 * 110.49000 * 156.61904 * 20 19 18 44 44 H 1.08001 * 119.99832 * 359.97438 * 24 23 21 45 45 H 1.07999 * 119.99531 * 180.27105 * 25 24 23 46 46 H 1.08005 * 119.99456 * 179.72314 * 26 25 24 47 47 H 1.08003 * 120.00058 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.00343 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3217 -1.1204 -4.0078 9 1 1.3431 -2.1618 -4.4118 10 1 2.4869 -0.1414 -5.1122 11 1 3.6297 -1.7583 -3.7120 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9161 -0.5470 3.6229 15 8 2.6131 -1.5327 3.6707 16 6 1.4511 0.1095 4.8972 17 1 0.4435 0.5045 4.7672 18 6 1.4740 -0.9091 6.0554 19 6 1.9325 -0.0806 7.2811 20 6 2.9900 0.8735 6.6726 21 6 2.4150 1.2430 5.2895 22 1 1.8752 2.1880 5.3500 23 6 3.5272 1.3481 4.2782 24 6 4.4973 0.3655 4.2129 25 6 5.5146 0.4593 3.2816 26 6 5.5680 1.5414 2.4231 27 6 4.6009 2.5267 2.4918 28 6 3.5805 2.4300 3.4194 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.7097 1.1618 -3.4844 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7489 1.2494 38 1 0.4780 -1.3189 6.2229 39 1 2.1860 -1.7077 5.8470 40 1 1.0989 0.4834 7.6997 41 1 2.3825 -0.7248 8.0365 42 1 3.9468 0.3628 6.5637 43 1 3.1003 1.7647 7.2903 44 1 4.4583 -0.4774 4.8871 45 1 6.2700 -0.3107 3.2277 46 1 6.3653 1.6168 1.6985 47 1 4.6425 3.3719 1.8208 48 1 2.8252 3.2001 3.4734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:06 Heat of formation + Delta-G solvation = -80.876847 kcal Electronic energy + Delta-G solvation = -28317.604786 eV Core-core repulsion = 24722.603894 eV Total energy + Delta-G solvation = -3595.000892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76269 -38.79329 -37.47232 -36.15822 -34.71222 -31.75656 -31.22150 -30.63643 -29.52385 -27.52864 -25.65446 -25.55527 -25.03663 -22.85689 -22.27096 -21.63975 -20.47523 -19.08128 -18.75036 -17.46428 -16.51116 -16.18508 -15.75599 -15.62926 -15.24415 -14.81224 -14.71924 -14.35723 -14.14438 -13.29042 -13.16527 -13.10478 -12.99105 -12.69201 -12.35458 -12.04844 -11.76874 -11.57851 -11.49187 -11.30623 -11.19893 -11.17434 -11.04657 -10.91895 -10.77225 -10.67236 -10.61310 -10.48244 -10.34295 -10.16248 -9.81571 -9.79131 -9.32003 -9.21846 -8.70519 -8.57061 -8.42771 -8.33446 -5.98379 -4.09358 1.58335 1.71906 2.78649 3.28950 3.33316 3.36125 3.43057 4.00397 4.37982 4.41131 4.55426 4.68380 5.08812 5.14758 5.25253 5.27909 5.31570 5.35615 5.42806 5.43760 5.48316 5.50304 5.54711 5.75921 5.78009 5.87978 5.90700 5.99469 6.13291 6.19392 6.22583 6.26995 6.27457 6.32694 6.55967 6.74830 6.81182 6.82825 6.84179 7.05230 7.17882 7.21502 7.27241 7.28065 7.48618 7.68481 7.73637 8.10577 8.21620 8.40167 8.48309 8.90492 9.55645 11.02657 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.004396 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.237832 B = 6368.155686 C = 7019.059099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.072 3.928 3 C -0.122 4.122 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.090 3.910 13 O -0.344 6.344 14 C 0.467 3.533 15 O -0.519 6.519 16 C -0.084 4.084 17 H 0.102 0.898 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.036 4.036 22 H 0.090 0.910 23 C -0.098 4.098 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.097 4.097 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.080 0.920 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 3.228 17.485 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 C -0.179 4.179 4 C -0.547 4.547 5 H 0.073 0.927 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.017 3.983 13 O -0.259 6.259 14 C 0.310 3.690 15 O -0.409 6.409 16 C -0.103 4.103 17 H 0.120 0.880 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.054 4.054 22 H 0.108 0.892 23 C -0.098 4.098 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.132 4.132 28 C -0.115 4.115 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.505 3.059 17.283 17.898 hybrid contribution 0.353 -0.687 -1.178 1.408 sum 3.857 2.372 16.105 16.730 Atomic orbital electron populations 1.21763 0.97570 0.98773 1.00536 1.18199 0.93151 0.93163 0.88318 1.21691 0.97953 0.98004 1.00277 1.20940 1.31736 1.12134 0.89918 0.92732 1.24834 0.94868 0.94899 0.98664 1.69833 1.36500 1.22570 1.23145 0.86587 0.79292 0.79420 0.82659 1.20682 1.21172 1.19951 1.23536 0.97974 0.95323 0.81492 1.86512 1.68876 1.55696 1.14811 1.23134 0.77438 0.82120 0.86314 1.90566 1.35988 1.26261 1.88115 1.21769 1.01195 0.96578 0.90783 0.87955 1.22453 1.02679 0.97810 0.92543 1.22485 0.98586 0.97795 0.97096 1.22557 0.99151 0.99506 0.94374 1.20669 0.93368 0.97854 0.93532 0.89179 1.19704 0.96421 0.95779 0.97942 1.21027 0.94054 0.97853 0.98869 1.21048 0.98851 0.97899 0.96159 1.21125 0.99094 0.94457 0.98600 1.21066 0.94769 0.99236 0.98104 1.20950 0.97804 0.97551 0.95205 0.96553 0.89840 0.96030 0.95935 0.90127 0.96585 0.93009 0.92911 0.93200 0.91054 0.89352 0.91244 0.91119 0.90719 0.91141 0.86022 0.86570 0.86447 0.86228 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.11 37.16 0.30 -2.86 16 2 C 0.07 1.79 0.58 -155.66 -0.09 1.70 16 3 C -0.12 -2.95 8.11 37.16 0.30 -2.64 16 4 C -0.51 -13.82 8.01 -34.44 -0.28 -14.10 16 5 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.86 5.15 -17.82 -0.09 1.76 16 7 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.09 2.06 4.26 37.16 0.16 2.22 16 13 O -0.34 -7.03 8.80 -39.25 -0.35 -7.38 16 14 C 0.47 8.33 4.65 36.01 0.17 8.50 16 15 O -0.52 -10.24 13.51 -18.75 -0.25 -10.49 16 16 C -0.08 -1.11 3.40 -90.65 -0.31 -1.41 16 17 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.12 -1.31 6.29 -25.08 -0.16 -1.47 16 19 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 20 C -0.12 -1.14 6.23 -25.07 -0.16 -1.30 16 21 C -0.04 -0.42 3.13 -90.65 -0.28 -0.70 16 22 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 23 C -0.10 -1.40 3.58 -104.63 -0.37 -1.78 16 24 C -0.10 -1.51 6.44 -39.58 -0.25 -1.76 16 25 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 26 C -0.11 -1.72 10.05 -39.59 -0.40 -2.11 16 27 C -0.11 -1.70 10.05 -39.58 -0.40 -2.10 16 28 C -0.10 -1.42 9.67 -39.58 -0.38 -1.80 16 29 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 34 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.15 6.80 -51.93 -0.35 0.79 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 1.80 6.51 -52.49 -0.34 1.46 16 45 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 47 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.12 1.54 8.00 -52.49 -0.42 1.13 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -29.29 373.55 -10.17 -39.46 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.89 Total: 3.67 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.81 Total: -23.32 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.52 Total: -23.62 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.60 Total: -17.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.29 -10.17 -39.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.421 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds