Wall clock time and date at job start Tue Mar 31 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46919 * 2 1 4 4 C 1.50705 * 109.47070 * 240.00419 * 2 1 3 5 5 H 1.07998 * 120.00252 * 240.00058 * 4 2 1 6 6 C 1.37880 * 119.99997 * 59.99800 * 4 2 1 7 7 N 1.31519 * 119.99902 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46767 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47174 * 119.99725 * 8 6 4 11 11 H 1.48497 * 109.47004 * 240.00005 * 8 6 4 12 12 C 1.52994 * 109.47583 * 120.00600 * 2 1 3 13 13 O 1.45200 * 109.46809 * 300.00018 * 12 2 1 14 14 C 1.34233 * 117.00198 * 180.02562 * 13 12 2 15 15 O 1.20823 * 119.99729 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00175 * 180.02562 * 14 13 12 17 17 H 1.08995 * 110.05417 * 322.48610 * 16 14 13 18 18 C 1.54375 * 110.04423 * 201.01659 * 16 14 13 19 19 C 1.54885 * 104.19663 * 217.08450 * 18 16 14 20 20 C 1.54897 * 102.74912 * 37.97021 * 19 18 16 21 21 C 1.53870 * 110.03719 * 83.90346 * 16 14 13 22 22 H 1.08993 * 110.03504 * 238.61746 * 21 16 14 23 23 C 1.50707 * 110.03039 * 0.02562 * 21 16 14 24 24 C 1.38235 * 120.00056 * 70.67964 * 23 21 16 25 25 C 1.38239 * 119.99509 * 180.21096 * 24 23 21 26 26 C 1.38231 * 120.00020 * 359.53852 * 25 24 23 27 27 C 1.38232 * 120.00426 * 0.26912 * 26 25 24 28 28 C 1.38231 * 119.99488 * 250.46770 * 23 21 16 29 29 H 1.09000 * 109.46949 * 299.99416 * 1 2 3 30 30 H 1.08997 * 109.47450 * 60.00031 * 1 2 3 31 31 H 1.09009 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47324 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47727 * 300.00472 * 3 2 1 34 34 H 1.09000 * 109.46833 * 60.00512 * 3 2 1 35 35 H 0.96996 * 120.00032 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47436 * 180.02562 * 12 2 1 37 37 H 1.08997 * 109.47518 * 59.99509 * 12 2 1 38 38 H 1.08999 * 110.46489 * 98.42060 * 18 16 14 39 39 H 1.08995 * 110.62156 * 335.83247 * 18 16 14 40 40 H 1.08997 * 110.76053 * 279.65595 * 19 18 16 41 41 H 1.09004 * 110.75847 * 156.27792 * 19 18 16 42 42 H 1.08994 * 110.48939 * 203.37526 * 20 19 18 43 43 H 1.09007 * 110.48292 * 80.73204 * 20 19 18 44 44 H 1.07997 * 119.99918 * 0.02562 * 24 23 21 45 45 H 1.08003 * 119.99490 * 179.81044 * 25 24 23 46 46 H 1.07996 * 119.99722 * 180.25578 * 26 25 24 47 47 H 1.07993 * 120.00559 * 179.97438 * 27 26 25 48 48 H 1.07996 * 120.00575 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1463 -2.2867 -3.6040 10 1 1.1659 -1.5863 -4.8162 11 1 3.1463 -0.1870 -4.8166 12 6 2.0401 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4347 14 6 1.9172 -0.5467 3.6228 15 8 2.6143 -1.5325 3.6704 16 6 1.4523 0.1097 4.8971 17 1 1.4488 1.1933 4.7797 18 6 2.3752 -0.2933 6.0671 19 6 1.4167 -0.4356 7.2754 20 6 0.1557 -1.0708 6.6385 21 6 0.0417 -0.3855 5.2611 22 1 -0.6466 0.4576 5.3194 23 6 -0.4398 -1.3748 4.2312 24 6 0.1310 -2.6319 4.1604 25 6 -0.3078 -3.5377 3.2128 26 6 -1.3236 -3.1899 2.3423 27 6 -1.8971 -1.9342 2.4156 28 6 -1.4551 -1.0267 3.3601 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 0.7085 1.1615 -3.4843 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -1.7490 1.2491 38 1 3.1138 0.4858 6.2558 39 1 2.8685 -1.2425 5.8576 40 1 1.1844 0.5405 7.7013 41 1 1.8425 -1.0964 8.0306 42 1 -0.7254 -0.8591 7.2441 43 1 0.2888 -2.1462 6.5198 44 1 0.9216 -2.9051 4.8435 45 1 0.1403 -4.5188 3.1556 46 1 -1.6691 -3.8990 1.6048 47 1 -2.6904 -1.6623 1.7353 48 1 -1.9031 -0.0457 3.4173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:10 Heat of formation + Delta-G solvation = -80.773149 kcal Electronic energy + Delta-G solvation = -28357.707097 eV Core-core repulsion = 24762.710701 eV Total energy + Delta-G solvation = -3594.996396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75740 -38.78339 -37.47148 -36.15514 -34.71173 -31.74976 -31.21697 -30.63035 -29.51741 -27.52397 -25.65201 -25.55236 -25.03636 -22.85325 -22.26400 -21.63594 -20.46620 -19.08138 -18.74948 -17.45199 -16.50006 -16.19511 -15.76216 -15.63013 -15.23811 -14.80716 -14.71371 -14.34794 -14.14301 -13.28296 -13.15744 -13.09686 -12.98481 -12.69370 -12.35658 -12.04001 -11.76476 -11.57535 -11.49048 -11.30253 -11.19628 -11.17692 -11.04228 -10.93086 -10.76876 -10.64011 -10.60879 -10.47928 -10.34571 -10.16324 -9.81440 -9.78956 -9.31940 -9.21695 -8.69702 -8.56084 -8.41880 -8.33431 -5.98549 -4.09400 1.59452 1.72635 2.79041 3.27762 3.33544 3.36793 3.43712 4.01358 4.37740 4.41095 4.55889 4.68858 5.09240 5.15288 5.25979 5.27839 5.31606 5.35921 5.42956 5.44314 5.48782 5.50799 5.54989 5.76615 5.78347 5.88651 5.91079 5.99802 6.13708 6.19638 6.22820 6.27415 6.28267 6.33395 6.56179 6.75666 6.82020 6.83097 6.84973 7.05443 7.18028 7.21916 7.27740 7.28742 7.48908 7.68694 7.73819 8.10736 8.21810 8.40261 8.48461 8.90724 9.55669 11.02504 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.004417 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.452785 B = 6337.844392 C = 6973.418903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.072 3.928 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.055 0.945 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.090 3.910 13 O -0.343 6.343 14 C 0.467 3.533 15 O -0.520 6.520 16 C -0.084 4.084 17 H 0.102 0.898 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.036 4.036 22 H 0.090 0.910 23 C -0.097 4.097 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.096 4.096 29 H 0.015 0.985 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.083 0.917 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -2.023 17.390 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 C -0.186 4.186 4 C -0.546 4.546 5 H 0.073 0.927 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.017 3.983 13 O -0.259 6.259 14 C 0.310 3.690 15 O -0.410 6.410 16 C -0.103 4.103 17 H 0.121 0.879 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.054 4.054 22 H 0.108 0.892 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.114 4.114 29 H 0.034 0.966 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.171 -2.196 17.191 17.826 hybrid contribution 0.526 -0.555 -1.181 1.407 sum -3.645 -2.751 16.011 16.649 Atomic orbital electron populations 1.21694 0.97146 0.98790 1.00264 1.18204 0.93526 0.92811 0.88327 1.21761 0.97925 0.98411 1.00528 1.20983 1.31642 1.12113 0.89908 0.92681 1.24838 0.94860 0.94919 0.98672 1.69846 1.36499 1.22665 1.23037 0.86534 0.78658 0.79748 0.83062 1.19822 1.20991 1.20996 1.23533 0.97552 0.95736 0.81495 1.86515 1.68933 1.55615 1.14788 1.23132 0.76957 0.82569 0.86333 1.90566 1.36504 1.25792 1.88122 1.21790 0.96043 1.01712 0.90776 0.87927 1.22464 0.97146 1.03350 0.92507 1.22488 0.95468 1.00894 0.97128 1.22560 0.98114 1.00574 0.94349 1.20670 0.94298 0.96980 0.93500 0.89181 1.19699 0.97502 0.94773 0.97761 1.21016 0.98926 0.93195 0.98885 1.21045 0.97262 0.99613 0.96004 1.21119 0.96701 0.96868 0.98570 1.21064 1.00264 0.93720 0.97972 1.20942 0.96496 0.98951 0.95048 0.96556 0.90167 0.95916 0.96040 0.89841 0.96566 0.93071 0.93225 0.92910 0.91089 0.89334 0.91251 0.91129 0.91143 0.90725 0.86089 0.86589 0.86453 0.86233 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.11 37.16 0.30 -2.63 16 2 C 0.07 1.78 0.58 -155.66 -0.09 1.69 16 3 C -0.13 -3.16 8.11 37.16 0.30 -2.86 16 4 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 5 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.12 9.35 55.43 0.52 -23.60 16 8 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.09 2.06 4.26 37.15 0.16 2.22 16 13 O -0.34 -7.01 8.72 -39.26 -0.34 -7.35 16 14 C 0.47 8.33 4.63 36.01 0.17 8.50 16 15 O -0.52 -10.27 13.65 -18.75 -0.26 -10.52 16 16 C -0.08 -1.11 3.40 -90.60 -0.31 -1.41 16 17 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.12 -1.31 6.29 -25.02 -0.16 -1.47 16 19 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 20 C -0.12 -1.14 6.23 -25.07 -0.16 -1.30 16 21 C -0.04 -0.42 3.13 -90.65 -0.28 -0.71 16 22 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 23 C -0.10 -1.39 3.52 -104.62 -0.37 -1.76 16 24 C -0.10 -1.54 6.49 -39.58 -0.26 -1.80 16 25 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 26 C -0.11 -1.72 10.05 -39.59 -0.40 -2.12 16 27 C -0.11 -1.68 10.05 -39.58 -0.40 -2.08 16 28 C -0.10 -1.41 9.68 -39.58 -0.38 -1.79 16 29 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 30 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 31 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 34 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.15 6.80 -51.93 -0.35 0.80 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.77 6.14 -51.92 -0.32 0.46 16 44 H 0.12 1.79 6.56 -52.49 -0.34 1.45 16 45 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 48 H 0.12 1.55 8.00 -52.49 -0.42 1.13 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -29.28 373.62 -10.17 -39.45 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.89 Total: 3.64 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.81 Total: -23.28 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.52 Total: -23.60 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.60 Total: -17.88 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.28 -10.17 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.325 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds