Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38233 * 120.00213 * 2 1 4 4 C 1.38231 * 120.00118 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.00064 * 179.97438 * 5 4 3 7 7 C 1.50696 * 112.84704 * 309.67192 * 6 5 4 8 8 O 1.20833 * 119.99655 * 230.32683 * 7 6 5 9 9 O 1.34222 * 120.00432 * 50.60950 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 C 1.53006 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47328 * 299.99882 * 11 10 9 13 13 C 1.52997 * 109.47159 * 60.00265 * 11 10 9 14 14 C 1.50701 * 109.46788 * 180.02562 * 11 10 9 15 15 H 1.07996 * 120.00388 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99872 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99802 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99987 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47007 * 90.00215 * 18 16 14 20 20 H 1.48496 * 109.46956 * 210.00227 * 18 16 14 21 21 H 1.48499 * 109.46971 * 330.00343 * 18 16 14 22 22 C 1.53783 * 113.60979 * 80.86819 * 6 5 4 23 23 C 1.54053 * 86.98274 * 140.02178 * 22 6 5 24 24 C 1.53778 * 113.61163 * 178.47313 * 6 5 4 25 25 C 1.38228 * 119.99855 * 0.26240 * 5 4 3 26 26 C 1.38231 * 120.00155 * 359.48942 * 25 5 4 27 27 H 1.09000 * 109.47045 * 90.00669 * 1 2 3 28 28 H 1.08999 * 109.47340 * 209.99935 * 1 2 3 29 29 H 1.09003 * 109.47218 * 330.00236 * 1 2 3 30 30 H 1.07997 * 119.99975 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.99649 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47380 * 299.99656 * 10 9 7 33 33 H 1.08997 * 109.47403 * 60.00337 * 10 9 7 34 34 H 1.08999 * 109.46873 * 60.00173 * 12 11 10 35 35 H 1.08999 * 109.47400 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47343 * 300.00349 * 12 11 10 37 37 H 1.09003 * 109.46961 * 60.00056 * 13 11 10 38 38 H 1.09007 * 109.47020 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47056 * 299.99836 * 13 11 10 40 40 H 0.97000 * 119.99313 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.61072 * 254.61058 * 22 6 5 42 42 H 1.08990 * 113.61287 * 25.51508 * 22 6 5 43 43 H 1.09000 * 113.61497 * 220.02119 * 23 22 6 44 44 H 1.08995 * 113.69515 * 89.12083 * 23 22 6 45 45 H 1.08999 * 113.61507 * 334.48789 * 24 6 5 46 46 H 1.09005 * 113.61119 * 105.31036 * 24 6 5 47 47 H 1.08005 * 120.00135 * 179.72212 * 25 5 4 48 48 H 1.08005 * 120.00307 * 180.25284 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.3638 0.8865 -1.0684 8 8 7.2141 0.4563 -1.8114 9 8 5.9447 2.1556 -1.1915 10 6 6.5567 2.9533 -2.2391 11 6 5.9558 4.3604 -2.2255 12 6 4.4474 4.2731 -2.4663 13 6 6.2185 5.0141 -0.8674 14 6 6.5905 5.1881 -3.3132 15 1 7.3471 4.7542 -3.9501 16 6 6.2053 6.4994 -3.4952 17 7 5.2843 7.0280 -2.7193 18 14 6.9926 7.5257 -4.8430 19 1 6.2090 7.3818 -6.0963 20 1 7.0110 8.9525 -4.4318 21 1 8.3834 7.0585 -5.0724 22 6 6.3946 0.2236 1.3918 23 6 7.4423 -0.8390 1.0091 24 6 6.3947 -1.4086 0.0381 25 6 3.5805 -1.1971 -0.0055 26 6 2.1982 -1.1972 -0.0008 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1204 2.1324 0.0001 32 1 7.6313 3.0152 -2.0678 33 1 6.3691 2.4879 -3.2067 34 1 3.9880 3.6743 -1.6799 35 1 4.0192 5.2754 -2.4562 36 1 4.2602 3.8074 -3.4338 37 1 7.2931 5.0763 -0.6960 38 1 5.7907 6.0167 -0.8579 39 1 5.7591 4.4153 -0.0810 40 1 5.0130 7.9504 -2.8477 41 1 6.8123 1.2209 1.5291 42 1 5.7437 -0.0804 2.2114 43 1 7.6954 -1.5163 1.8248 44 1 8.3210 -0.4286 0.5118 45 1 5.7437 -2.1580 0.4884 46 1 6.8112 -1.7286 -0.9171 47 1 4.1205 -2.1325 -0.0100 48 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842758613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = -54.657315 kcal Electronic energy + Delta-G solvation = -27480.215998 eV Core-core repulsion = 23886.352069 eV Total energy + Delta-G solvation = -3593.863928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07346 -39.13774 -37.93642 -36.26780 -34.84447 -32.75212 -31.27526 -30.88417 -28.32372 -26.24027 -25.74480 -25.62320 -25.25601 -24.54091 -22.66860 -21.60850 -21.05133 -19.04376 -18.80337 -17.41826 -16.36251 -16.13716 -15.75773 -15.54435 -15.09907 -14.94789 -14.79930 -14.39874 -13.79437 -13.72864 -13.34310 -13.13490 -12.99298 -12.75853 -12.51507 -12.43932 -12.18349 -11.94168 -11.71139 -11.48097 -11.43985 -11.20558 -11.08535 -10.97219 -10.74139 -10.70729 -10.48384 -10.42094 -10.37217 -10.21268 -9.99130 -9.88994 -9.41133 -9.30946 -8.80821 -8.76030 -8.41359 -8.37845 -6.02465 -4.13796 1.33092 1.52010 2.58433 3.14226 3.27496 3.34430 3.38818 3.85172 4.29010 4.38095 4.53661 4.59829 4.68778 4.90775 4.95701 5.05037 5.14864 5.24110 5.34810 5.43830 5.53370 5.53675 5.62117 5.65012 5.75882 5.83702 5.85889 5.95323 5.97926 6.08406 6.10731 6.11996 6.20826 6.26922 6.46754 6.51159 6.68260 6.70800 6.77332 6.97864 7.06284 7.09049 7.12775 7.18747 7.40254 7.61912 7.69697 8.04813 8.14809 8.26686 8.39451 8.85941 9.51693 10.98667 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.004075 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.999512 B = 6869.712091 C = 8280.591024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.089 4.089 5 C -0.079 4.079 6 C -0.042 4.042 7 C 0.482 3.518 8 O -0.513 6.513 9 O -0.341 6.341 10 C 0.083 3.917 11 C 0.071 3.929 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.127 4.127 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.017 0.983 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.084 0.916 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.124 0.876 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -15.443 9.633 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.107 4.107 5 C -0.079 4.079 6 C -0.043 4.043 7 C 0.325 3.675 8 O -0.403 6.403 9 O -0.256 6.256 10 C 0.010 3.990 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.186 4.186 14 C -0.550 4.550 15 H 0.074 0.926 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.152 4.152 23 C -0.179 4.179 24 C -0.158 4.158 25 C -0.129 4.129 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.142 0.858 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.399 -15.329 9.411 18.780 hybrid contribution 0.530 0.633 -1.039 1.327 sum -4.869 -14.696 8.372 17.600 Atomic orbital electron populations 1.20782 0.91445 1.02512 1.02274 1.19955 0.95950 0.93339 0.99630 1.21091 0.94195 0.97580 1.00683 1.21417 0.94216 0.98621 0.96422 1.19290 0.92471 0.93853 1.02312 1.20498 0.92263 0.96465 0.95117 1.22610 0.79571 0.82245 0.83092 1.90608 1.31026 1.75208 1.43419 1.86502 1.62299 1.22213 1.54616 1.23699 0.96626 0.92071 0.86581 1.18229 0.93369 0.86257 0.95028 1.21770 0.97556 1.02276 0.96992 1.21763 0.98410 1.02873 0.95556 1.20937 1.22245 0.96220 1.15595 0.92579 1.24844 0.94888 0.97472 0.96067 1.69830 1.30033 1.14134 1.37994 0.86556 0.79803 0.79410 0.82022 1.20646 1.21143 1.19915 1.23001 0.97586 1.00740 0.93859 1.22935 0.97437 0.98302 0.99267 1.23013 0.97545 0.93727 1.01483 1.21029 0.94085 0.97389 1.00404 1.20909 0.93891 0.97351 1.02388 0.91249 0.91831 0.91535 0.85827 0.84018 0.92616 0.92652 0.96406 0.89779 0.95938 0.95891 0.89743 0.96518 0.92930 0.90258 0.88572 0.90756 0.89613 0.88562 0.89676 0.85791 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.09 -1.05 5.88 -104.63 -0.62 -1.66 16 3 C -0.12 -1.59 9.70 -39.59 -0.38 -1.97 16 4 C -0.09 -1.34 9.02 -39.59 -0.36 -1.69 16 5 C -0.08 -1.10 5.01 -104.62 -0.52 -1.63 16 6 C -0.04 -0.59 1.13 -156.00 -0.18 -0.77 16 7 C 0.48 8.81 6.70 36.00 0.24 9.05 16 8 O -0.51 -10.48 15.58 -18.76 -0.29 -10.77 16 9 O -0.34 -6.78 6.45 -39.24 -0.25 -7.03 16 10 C 0.08 1.85 4.26 37.16 0.16 2.01 16 11 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 12 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 13 C -0.13 -3.04 8.11 37.16 0.30 -2.74 16 14 C -0.51 -13.67 8.01 -34.44 -0.28 -13.94 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 17 N -0.88 -23.78 9.35 55.43 0.52 -23.26 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.11 -1.35 7.23 -25.77 -0.19 -1.54 16 23 C -0.14 -1.56 7.76 -25.77 -0.20 -1.76 16 24 C -0.12 -1.40 6.44 -25.92 -0.17 -1.57 16 25 C -0.11 -1.33 9.19 -39.59 -0.36 -1.69 16 26 C -0.13 -1.43 9.70 -39.58 -0.38 -1.82 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 2.36 5.84 -52.48 -0.31 2.06 16 32 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.02 0.38 7.24 -51.93 -0.38 0.00 16 35 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 39 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 40 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 0.88 6.02 -51.93 -0.31 0.57 16 46 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 47 H 0.12 1.21 5.80 -52.48 -0.30 0.91 16 48 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -28.67 377.86 -9.55 -38.21 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.74 Total: 3.10 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.45 Total: -21.76 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.52 Total: -23.26 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.55 Total: -17.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.67 -9.55 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.443 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds