Wall clock time and date at job start Tue Mar 31 2020 11:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 O 1.45198 * 109.47301 * 60.00199 * 13 2 1 15 15 C 1.34226 * 117.00235 * 179.97438 * 14 13 2 16 16 O 1.20827 * 119.99724 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00369 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.67715 * 60.50419 * 17 15 14 19 19 C 1.53322 * 109.68096 * 181.05567 * 17 15 14 20 20 C 1.52737 * 108.37804 * 189.58321 * 19 17 15 21 21 C 1.50628 * 110.57796 * 308.84248 * 20 19 17 22 22 C 1.38908 * 117.75014 * 197.51862 * 21 20 19 23 23 C 1.37929 * 120.54893 * 180.54415 * 22 21 20 24 24 C 1.38269 * 119.76618 * 0.02562 * 23 22 21 25 25 C 1.37937 * 119.77207 * 359.87550 * 24 23 22 26 26 C 1.37662 * 122.56175 * 17.85181 * 21 20 19 27 27 C 1.50623 * 122.56787 * 359.25257 * 26 21 20 28 28 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 29 29 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 30 30 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 33 33 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 34 34 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 36 36 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 38 38 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 39 39 H 1.09003 * 109.67953 * 309.30230 * 19 17 15 40 40 H 1.08994 * 109.68485 * 69.86070 * 19 17 15 41 41 H 1.09003 * 109.25153 * 188.56057 * 20 19 17 42 42 H 1.09003 * 109.25752 * 69.12842 * 20 19 17 43 43 H 1.08003 * 119.72511 * 0.56389 * 22 21 20 44 44 H 1.08003 * 120.12275 * 180.02562 * 23 22 21 45 45 H 1.08005 * 120.11487 * 179.89341 * 24 23 22 46 46 H 1.07999 * 119.72319 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.25460 * 257.43790 * 27 26 21 48 48 H 1.09007 * 109.24925 * 138.01455 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 8 1.5560 -0.0368 -2.4348 15 6 1.9170 -0.5465 -3.6229 16 8 2.6148 -1.5318 -3.6706 17 6 1.4532 0.1107 -4.8972 18 1 1.8228 1.1354 -4.9374 19 6 1.9774 -0.6759 -6.1043 20 6 1.6992 0.1375 -7.3668 21 6 0.2545 0.5610 -7.4161 22 6 -0.2568 0.9749 -8.6395 23 6 -1.5691 1.3855 -8.7482 24 6 -2.3830 1.3860 -7.6305 25 6 -1.8777 0.9733 -6.4151 26 6 -0.5573 0.5565 -6.3043 27 6 -0.0733 0.1123 -4.9488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7490 1.2492 36 1 2.8622 -1.8819 4.7337 37 1 3.1300 -0.7208 -1.2495 38 1 1.6767 -1.7489 -1.2492 39 1 3.0505 -0.8363 -6.0000 40 1 1.4664 -1.6366 -6.1665 41 1 1.9258 -0.4701 -8.2430 42 1 2.3339 1.0237 -7.3707 43 1 0.3784 0.9749 -9.5130 44 1 -1.9596 1.7056 -9.7029 45 1 -3.4109 1.7080 -7.7088 46 1 -2.5143 0.9736 -5.5426 47 1 -0.4408 -0.8940 -4.7480 48 1 -0.4579 0.7930 -4.1891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845555877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:40 Heat of formation + Delta-G solvation = -100.708740 kcal Electronic energy + Delta-G solvation = -26213.768023 eV Core-core repulsion = 22617.907155 eV Total energy + Delta-G solvation = -3595.860868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81631 -39.78354 -37.40037 -36.04392 -35.35386 -32.91044 -32.32941 -30.74194 -29.28067 -27.31017 -26.46244 -26.41197 -24.65410 -23.59397 -22.77955 -22.40526 -20.85719 -19.49669 -18.24407 -17.45713 -16.80016 -16.38079 -16.33120 -15.94727 -15.44720 -14.98999 -14.58799 -14.52048 -14.17258 -13.80580 -13.72042 -13.41180 -13.26704 -13.01386 -12.91569 -12.45616 -12.26209 -12.20675 -12.05347 -11.76894 -11.70543 -11.29511 -11.25501 -11.08985 -10.95739 -10.85861 -10.70799 -10.59861 -10.40163 -10.27539 -10.25789 -10.13986 -9.73419 -9.20757 -9.00482 -8.95696 -8.80463 -8.36778 -6.01104 -4.02314 1.10782 1.12233 2.35412 2.89716 3.32414 3.37381 3.39266 3.49015 4.23373 4.37616 4.44968 4.58799 4.67557 4.69639 4.82983 4.85591 5.01877 5.11006 5.19704 5.26405 5.34379 5.38006 5.50575 5.51251 5.52303 5.60785 5.61799 5.74298 5.77509 5.82267 5.92058 6.00841 6.06046 6.19373 6.24077 6.26798 6.37881 6.40600 6.50833 6.64252 6.70607 6.76362 6.83569 7.10693 7.11451 7.13630 7.60302 7.72250 7.95609 7.98421 8.39295 9.01784 9.60650 11.10497 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.002466 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.488909 B =11351.585330 C =12108.556061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.078 3.922 14 O -0.348 6.348 15 C 0.460 3.540 16 O -0.511 6.511 17 C -0.079 4.079 18 H 0.110 0.890 19 C -0.104 4.104 20 C -0.080 4.080 21 C -0.078 4.078 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.071 4.071 27 C -0.072 4.072 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.082 0.918 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 5.786 -25.238 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.005 3.995 14 O -0.264 6.264 15 C 0.303 3.697 16 O -0.400 6.400 17 C -0.098 4.098 18 H 0.128 0.872 19 C -0.142 4.142 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.071 4.071 27 C -0.109 4.109 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.101 0.899 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.093 5.366 -25.060 26.343 hybrid contribution -0.222 0.249 0.983 1.038 sum -6.315 5.614 -24.078 25.517 Atomic orbital electron populations 1.21709 0.94854 1.00889 1.00802 1.20801 0.96119 0.96175 0.92720 1.21713 1.00007 0.95760 1.00816 1.19124 0.96365 0.95283 0.89464 1.21110 1.31250 1.12142 0.90300 0.92140 1.25021 0.95304 0.95097 0.99122 1.69958 1.36900 1.23034 1.23595 0.86672 0.79171 0.79763 0.82484 1.21392 1.20266 1.20270 1.23502 0.98891 0.95907 0.81158 1.86489 1.69271 1.55815 1.14867 1.23504 0.77600 0.82568 0.86060 1.90653 1.35607 1.25597 1.88144 1.21026 0.97306 1.01583 0.89875 0.87193 1.21469 1.02539 0.98528 0.91630 1.20508 0.92395 1.00244 0.98552 1.19653 0.95839 0.99464 0.92818 1.21138 0.95767 0.99928 0.97025 1.21067 0.94137 1.00374 0.98590 1.21075 0.99817 1.00286 0.92893 1.21188 0.94932 0.99236 0.98067 1.19528 0.93821 0.99379 0.94415 1.20421 0.92772 1.03103 0.94625 0.91601 0.94207 0.93805 0.93804 0.94199 0.91592 0.96377 0.96377 0.92961 0.91685 0.91680 0.89980 0.90706 0.90128 0.90237 0.86203 0.86212 0.86095 0.85861 0.89917 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.26 16 3 C -0.13 -2.37 8.08 37.15 0.30 -2.07 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.08 1.45 4.32 37.16 0.16 1.61 16 14 O -0.35 -5.62 8.81 -39.25 -0.35 -5.97 16 15 C 0.46 6.80 7.24 36.00 0.26 7.06 16 16 O -0.51 -8.99 15.59 -18.75 -0.29 -9.28 16 17 C -0.08 -0.85 2.65 -91.74 -0.24 -1.09 16 18 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 19 C -0.10 -1.01 4.72 -26.70 -0.13 -1.13 16 20 C -0.08 -0.62 5.67 -28.05 -0.16 -0.78 16 21 C -0.08 -0.70 5.74 -104.62 -0.60 -1.30 16 22 C -0.12 -0.97 9.61 -39.45 -0.38 -1.35 16 23 C -0.12 -0.96 10.05 -39.68 -0.40 -1.36 16 24 C -0.12 -0.99 10.05 -39.68 -0.40 -1.39 16 25 C -0.12 -1.04 9.61 -39.44 -0.38 -1.42 16 26 C -0.07 -0.69 5.74 -104.62 -0.60 -1.29 16 27 C -0.07 -0.72 4.92 -28.06 -0.14 -0.86 16 28 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 29 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 34 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.73 8.05 -52.48 -0.42 0.31 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 47 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 48 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -30.70 382.92 -10.20 -40.90 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.08 Total: -1.51 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.97 Total: -20.42 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.64 Total: -15.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.70 -10.20 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845555877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.805 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds