Wall clock time and date at job start Tue Mar 31 2020 10:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46690 * 299.99463 * 3 2 1 6 6 H 1.48500 * 109.46870 * 59.99552 * 3 2 1 7 7 C 1.37875 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00653 * 183.41849 * 7 2 1 9 9 C 1.50708 * 119.99906 * 3.42074 * 7 2 1 10 10 C 1.53001 * 115.54575 * 324.31382 * 9 7 2 11 11 N 1.46495 * 109.47448 * 306.30347 * 10 9 7 12 12 C 1.34776 * 120.00308 * 184.88407 * 11 10 9 13 13 O 1.21274 * 119.99937 * 354.99646 * 12 11 10 14 14 C 1.50696 * 119.99901 * 174.99243 * 12 11 10 15 15 H 1.09002 * 109.53829 * 297.83592 * 14 12 11 16 16 C 1.53116 * 109.50670 * 57.93733 * 14 12 11 17 17 C 1.53114 * 109.16396 * 177.59442 * 16 14 12 18 18 C 1.53042 * 109.27704 * 302.34341 * 17 16 14 19 19 N 1.46851 * 109.51159 * 59.18640 * 18 17 16 20 20 C 1.46904 * 110.99710 * 174.15134 * 19 18 17 21 21 C 1.52998 * 109.46670 * 78.16161 * 20 19 18 22 22 F 1.39897 * 109.47408 * 306.31910 * 21 20 19 23 23 F 1.39900 * 109.47367 * 66.32032 * 21 20 19 24 24 C 1.46848 * 111.19743 * 298.23832 * 19 18 17 25 25 C 1.52995 * 117.49761 * 109.98031 * 9 7 2 26 26 C 1.53001 * 117.50231 * 178.64156 * 9 7 2 27 27 H 0.97000 * 120.00383 * 5.01255 * 1 2 3 28 28 H 1.09008 * 109.46862 * 186.30160 * 10 9 7 29 29 H 1.09002 * 109.47221 * 66.31299 * 10 9 7 30 30 H 0.97002 * 119.99506 * 4.88986 * 11 10 9 31 31 H 1.09008 * 109.52124 * 57.68840 * 16 14 12 32 32 H 1.08999 * 109.57277 * 297.53600 * 16 14 12 33 33 H 1.08999 * 109.50619 * 182.40565 * 17 16 14 34 34 H 1.08999 * 109.53843 * 62.30335 * 17 16 14 35 35 H 1.09000 * 109.45825 * 179.19450 * 18 17 16 36 36 H 1.08997 * 109.46413 * 299.17277 * 18 17 16 37 37 H 1.09000 * 109.46753 * 198.15787 * 20 19 18 38 38 H 1.08996 * 109.47233 * 318.16208 * 20 19 18 39 39 H 1.09001 * 109.46900 * 186.32005 * 21 20 19 40 40 H 1.08996 * 109.47051 * 301.74544 * 24 19 18 41 41 H 1.08997 * 109.44954 * 181.76744 * 24 19 18 42 42 H 1.09010 * 117.50026 * 215.00060 * 25 9 7 43 43 H 1.09000 * 117.50657 * 0.02784 * 25 9 7 44 44 H 1.09002 * 117.49315 * 359.97438 * 26 9 7 45 45 H 1.08992 * 117.49957 * 144.97278 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0830 -1.1949 0.0563 9 6 1.2530 -2.4981 -0.0768 10 6 -0.0878 -2.5316 0.6595 11 7 0.1088 -2.1181 2.0511 12 6 -0.9204 -2.1655 2.9200 13 8 -2.0296 -2.4632 2.5305 14 6 -0.6927 -1.8486 4.3756 15 1 0.0049 -2.5701 4.8010 16 6 -0.1126 -0.4377 4.5071 17 6 0.0594 -0.1012 5.9909 18 6 -1.2931 -0.2231 6.6966 19 7 -1.8053 -1.5907 6.5426 20 6 -3.0346 -1.7835 7.3235 21 6 -4.2152 -1.1571 6.5788 22 9 -3.9215 0.1771 6.2773 23 9 -4.4465 -1.8630 5.3933 24 6 -2.0234 -1.9199 5.1282 25 6 1.3679 -3.3039 -1.3722 26 6 2.0763 -3.7874 -0.1043 27 1 -0.4851 0.8368 -0.0734 28 1 -0.4907 -3.5442 0.6348 29 1 -0.7864 -1.8507 0.1733 30 1 0.9797 -1.8101 2.3471 31 1 -0.7921 0.2799 4.0471 32 1 0.8559 -0.3933 4.0088 33 1 0.4321 0.9181 6.0921 34 1 0.7690 -0.7946 6.4421 35 1 -1.1714 0.0020 7.7561 36 1 -1.9982 0.4808 6.2544 37 1 -3.2152 -2.8499 7.4593 38 1 -2.9249 -1.3066 8.2974 39 1 -5.1050 -1.2003 7.2069 40 1 -2.7250 -1.2080 4.6935 41 1 -2.4321 -2.9272 5.0488 42 1 0.4883 -3.8581 -1.7000 43 1 1.9874 -2.8912 -2.1685 44 1 3.1615 -3.6924 -0.0670 45 1 1.6629 -4.6594 0.4024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867977317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:48 Heat of formation + Delta-G solvation = -110.495854 kcal Electronic energy + Delta-G solvation = -28365.530899 eV Core-core repulsion = 24247.308852 eV Total energy + Delta-G solvation = -4118.222048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.20247 -47.07793 -39.58902 -37.91187 -36.56228 -33.96442 -32.83937 -32.14348 -30.83252 -29.04999 -26.14889 -25.38502 -24.26630 -23.23123 -22.13604 -21.22826 -20.12938 -19.26166 -19.06889 -17.75062 -17.43228 -16.76718 -16.48671 -15.78260 -15.49506 -14.83481 -14.81958 -14.64672 -14.30463 -14.15344 -13.77207 -13.54668 -13.48985 -13.26966 -13.08130 -12.71627 -12.58581 -12.33411 -12.18026 -11.83900 -11.75792 -11.58292 -11.36046 -11.13356 -11.03414 -10.74066 -10.71436 -10.51070 -10.43829 -10.24220 -10.16915 -9.66554 -9.02783 -8.84963 -8.74159 -8.28740 -8.26491 -7.72393 -5.99909 -4.19550 3.20046 3.30663 3.33051 3.49929 3.59527 3.77020 4.12483 4.27549 4.30781 4.40614 4.58907 4.88737 4.95989 5.05435 5.13275 5.21758 5.33504 5.41517 5.47890 5.57364 5.66275 5.75221 5.88887 5.98690 6.04581 6.05186 6.10021 6.19091 6.33812 6.43500 6.53846 6.58185 6.64223 6.75962 6.91578 6.92529 6.97973 7.14534 7.27788 7.60945 7.74658 7.99334 8.32535 8.66846 8.86031 9.30879 9.43805 10.89491 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.004161 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.479920 B = 6728.062619 C = 7442.335963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.166 3.834 11 N -0.679 5.679 12 C 0.508 3.492 13 O -0.564 6.564 14 C -0.102 4.102 15 H 0.096 0.904 16 C -0.113 4.113 17 C -0.113 4.113 18 C 0.036 3.964 19 N -0.532 5.532 20 C 0.011 3.989 21 C 0.221 3.779 22 F -0.203 7.203 23 F -0.193 7.193 24 C 0.068 3.932 25 C -0.199 4.199 26 C -0.212 4.212 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.111 0.889 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -1.169 16.388 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.036 3.964 10 C 0.043 3.957 11 N -0.326 5.326 12 C 0.293 3.707 13 O -0.444 6.444 14 C -0.124 4.124 15 H 0.114 0.886 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.091 4.091 19 N -0.255 5.255 20 C -0.119 4.119 21 C 0.165 3.835 22 F -0.184 7.184 23 F -0.174 7.174 24 C -0.059 4.059 25 C -0.238 4.238 26 C -0.249 4.249 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.129 0.871 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.961 -1.562 16.292 17.102 hybrid contribution 0.318 1.589 -0.487 1.692 sum -4.644 0.027 15.805 16.473 Atomic orbital electron populations 1.69915 1.05621 1.26613 1.47922 1.24997 0.94821 0.98991 0.94174 0.86566 0.80132 0.83750 0.77802 1.19737 1.20908 1.20901 1.20546 0.92586 0.88607 1.51593 0.92086 1.19249 0.93069 0.89850 0.94258 1.21037 0.97873 0.96450 0.80388 1.45632 1.12334 1.63992 1.10646 1.20170 0.84966 0.78256 0.87343 1.90624 1.23675 1.50377 1.79747 1.21277 0.98602 0.98912 0.93571 0.88633 1.21559 1.01892 0.95315 0.96311 1.21567 0.96586 1.01591 0.95331 1.22480 0.97158 0.88962 1.00518 1.62048 1.26552 1.25855 1.11050 1.23417 0.87237 1.03344 0.97907 1.22883 1.01542 0.74848 0.84217 1.92918 1.94590 1.36547 1.94382 1.93058 1.95764 1.78292 1.50320 1.22220 0.96019 1.02619 0.85074 1.22939 1.01526 1.06677 0.92657 1.22944 0.98210 1.00176 1.03571 0.92770 0.96233 0.87135 0.76697 0.91564 0.90692 0.91287 0.91112 0.91039 0.92493 0.87540 0.88013 0.87637 0.92319 0.89743 0.91512 0.90265 0.90680 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.98 10.17 55.43 0.56 -22.41 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 3 Si 0.89 19.97 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.52 8.27 -34.44 -0.28 -12.80 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.04 0.86 2.07 -155.66 -0.32 0.54 16 10 C 0.17 3.99 4.61 -4.04 -0.02 3.97 16 11 N -0.68 -14.81 5.02 -60.30 -0.30 -15.11 16 12 C 0.51 10.78 7.17 -10.99 -0.08 10.70 16 13 O -0.56 -13.96 16.00 5.56 0.09 -13.87 16 14 C -0.10 -1.69 2.71 -91.69 -0.25 -1.94 16 15 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 16 C -0.11 -1.75 5.13 -26.61 -0.14 -1.89 16 17 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 18 C 0.04 0.43 5.05 -3.83 -0.02 0.41 16 19 N -0.53 -6.54 4.86 -234.66 -1.14 -7.68 16 20 C 0.01 0.10 6.02 -3.82 -0.02 0.07 16 21 C 0.22 2.26 5.13 37.16 0.19 2.45 16 22 F -0.20 -2.59 13.86 2.25 0.03 -2.56 16 23 F -0.19 -2.76 13.92 2.25 0.03 -2.73 16 24 C 0.07 1.07 2.50 -3.83 -0.01 1.06 16 25 C -0.20 -4.40 9.96 -26.70 -0.27 -4.67 16 26 C -0.21 -4.45 9.92 -26.69 -0.26 -4.72 16 27 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 28 H 0.02 0.47 8.08 -51.92 -0.42 0.05 16 29 H 0.11 3.04 5.96 -51.93 -0.31 2.73 16 30 H 0.40 8.34 7.13 -40.82 -0.29 8.05 16 31 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.07 1.18 7.43 -51.93 -0.39 0.80 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.65 7.83 -51.93 -0.41 0.25 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.07 5.64 -51.93 -0.29 0.78 16 41 H 0.08 1.40 7.65 -51.93 -0.40 1.00 16 42 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -29.68 355.48 -9.11 -38.79 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.98 Total: 11.83 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.74 Total: -6.56 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.88 Total: -45.20 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.06 Total: -5.29 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.68 -9.11 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867977317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.703 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds