Wall clock time and date at job start Tue Mar 31 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99879 * 2 1 4 4 N 1.46495 * 109.47003 * 125.00271 * 3 2 1 5 5 C 1.46496 * 120.00255 * 95.20228 * 4 3 2 6 6 C 1.50701 * 109.47308 * 266.28057 * 5 4 3 7 7 H 1.08004 * 119.99404 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00472 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99864 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47081 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47383 * 299.99762 * 10 8 6 13 13 H 1.48506 * 109.47176 * 59.99882 * 10 8 6 14 14 C 1.34781 * 119.99929 * 275.19476 * 4 3 2 15 15 O 1.21282 * 119.99763 * 3.92381 * 14 4 3 16 16 C 1.50702 * 120.00014 * 183.91873 * 14 4 3 17 17 H 1.09003 * 109.50397 * 29.56949 * 16 14 4 18 18 C 1.53120 * 109.50171 * 269.49438 * 16 14 4 19 19 C 1.53125 * 109.15669 * 182.40196 * 18 16 14 20 20 C 1.53045 * 109.27546 * 57.65690 * 19 18 16 21 21 N 1.46840 * 109.52258 * 300.81605 * 20 19 18 22 22 C 1.46901 * 111.00075 * 185.84139 * 21 20 19 23 23 C 1.53001 * 109.47043 * 77.20587 * 22 21 20 24 24 F 1.39903 * 109.46720 * 293.99421 * 23 22 21 25 25 F 1.39899 * 109.47288 * 53.99311 * 23 22 21 26 26 C 1.46852 * 111.19889 * 61.74413 * 21 20 19 27 27 H 1.07999 * 119.99576 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00329 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.99886 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47163 * 5.00036 * 3 2 1 31 31 H 1.09000 * 109.47338 * 245.00488 * 3 2 1 32 32 H 1.09004 * 109.47590 * 146.27737 * 5 4 3 33 33 H 1.09005 * 109.46904 * 26.27813 * 5 4 3 34 34 H 0.97000 * 120.00021 * 0.02562 * 9 8 6 35 35 H 1.09000 * 109.52371 * 302.30645 * 18 16 14 36 36 H 1.08998 * 109.52698 * 62.50263 * 18 16 14 37 37 H 1.09002 * 109.49939 * 177.59031 * 19 18 16 38 38 H 1.08996 * 109.50697 * 297.67242 * 19 18 16 39 39 H 1.09004 * 109.45938 * 60.83555 * 20 19 18 40 40 H 1.08997 * 109.45985 * 180.80916 * 20 19 18 41 41 H 1.08996 * 109.47028 * 197.20487 * 22 21 20 42 42 H 1.08998 * 109.47122 * 317.20307 * 22 21 20 43 43 H 1.08995 * 109.47340 * 173.99575 * 23 22 21 44 44 H 1.08999 * 109.46125 * 178.23871 * 26 21 20 45 45 H 1.09000 * 109.45735 * 58.27382 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3904 0.9327 0.9410 6 6 4.5456 -0.5282 1.2765 7 1 3.6895 -1.1019 1.5998 8 6 5.7805 -1.1323 1.1720 9 7 6.8231 -0.4336 0.7788 10 14 5.9729 -2.9430 1.5886 11 1 7.3886 -3.3476 1.3955 12 1 5.5813 -3.1698 3.0029 13 1 5.1017 -3.7512 0.6980 14 6 2.5647 1.7239 2.3475 15 8 1.3935 1.9861 2.5218 16 6 3.5403 1.8362 3.4906 17 1 4.5282 2.0850 3.1028 18 6 3.6062 0.5021 4.2393 19 6 4.5535 0.6428 5.4341 20 6 4.0605 1.7741 6.3393 21 7 4.0158 3.0284 5.5769 22 6 3.6799 4.1624 6.4483 23 6 4.9129 4.5645 7.2601 24 9 5.2473 3.5317 8.1426 25 9 5.9848 4.8025 6.3931 26 6 3.0768 2.9329 4.4520 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 5.0302 1.5256 1.5947 33 1 4.6776 1.0995 -0.0973 34 1 6.7233 0.5068 0.5628 35 1 2.6109 0.2335 4.5932 36 1 3.9774 -0.2736 3.5696 37 1 4.5716 -0.2911 5.9960 38 1 5.5575 0.8725 5.0775 39 1 3.0621 1.5365 6.7065 40 1 4.7408 1.8864 7.1835 41 1 3.3556 5.0055 5.8384 42 1 2.8766 3.8741 7.1263 43 1 4.6956 5.4701 7.8263 44 1 3.0425 3.8867 3.9256 45 1 2.0830 2.6899 4.8281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868512433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:37 Heat of formation + Delta-G solvation = -121.706324 kcal Electronic energy + Delta-G solvation = -28246.369934 eV Core-core repulsion = 24127.661764 eV Total energy + Delta-G solvation = -4118.708170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.90635 -46.89634 -39.85474 -38.06040 -35.51693 -34.05550 -33.26093 -32.17979 -30.69426 -29.12065 -27.08657 -25.84371 -24.07072 -23.33728 -22.74368 -22.02677 -19.98268 -19.42445 -18.37333 -17.67153 -17.30678 -17.05575 -16.45141 -16.27824 -15.60534 -15.10592 -14.69847 -14.51628 -14.14162 -13.88203 -13.79394 -13.74903 -13.50538 -13.25068 -13.16658 -12.88725 -12.75601 -12.49629 -12.39169 -12.19292 -11.86384 -11.72644 -11.41539 -11.23615 -11.08201 -10.87551 -10.77259 -10.53147 -10.46292 -10.18586 -10.11694 -9.87943 -9.26565 -9.19315 -8.79362 -8.48522 -8.32272 -7.73808 -6.49879 -4.25103 2.66191 3.30807 3.36597 3.38043 3.55009 3.56536 3.84281 4.08544 4.18793 4.42019 4.43078 4.84445 5.05944 5.12662 5.22201 5.28994 5.31943 5.39139 5.41627 5.44010 5.57665 5.65673 5.71331 5.83946 5.88622 5.98109 6.03698 6.08650 6.20415 6.23937 6.35485 6.40838 6.54593 6.73502 6.87663 6.94603 7.05825 7.06226 7.09836 7.19008 7.39016 7.86445 8.10848 8.39026 8.65871 8.92526 9.44304 10.85798 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004805 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.768241 B = 5826.390766 C = 7256.726205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.149 3.851 4 N -0.588 5.588 5 C 0.225 3.775 6 C -0.609 4.609 7 H 0.056 0.944 8 C 0.027 3.973 9 N -0.902 5.902 10 Si 1.062 2.938 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.288 1.288 14 C 0.526 3.474 15 O -0.572 6.572 16 C -0.092 4.092 17 H 0.103 0.897 18 C -0.115 4.115 19 C -0.111 4.111 20 C 0.042 3.958 21 N -0.531 5.531 22 C 0.002 3.998 23 C 0.271 3.729 24 F -0.206 7.206 25 F -0.194 7.194 26 C 0.077 3.923 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.025 0.975 34 H 0.269 0.731 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 7.963 9.390 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C 0.026 3.974 4 N -0.318 5.318 5 C 0.105 3.895 6 C -0.648 4.648 7 H 0.074 0.926 8 C -0.179 4.179 9 N -0.538 5.538 10 Si 0.890 3.110 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.215 1.215 14 C 0.314 3.686 15 O -0.453 6.453 16 C -0.114 4.114 17 H 0.121 0.879 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.086 4.086 21 N -0.256 5.256 22 C -0.128 4.128 23 C 0.216 3.784 24 F -0.188 7.188 25 F -0.175 7.175 26 C -0.050 4.050 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.960 6.937 9.334 12.643 hybrid contribution -1.784 0.893 0.142 2.000 sum -6.744 7.829 9.476 14.020 Atomic orbital electron populations 1.23672 0.95896 1.01015 1.02724 1.23410 0.95871 0.99667 0.97770 1.20393 0.92268 0.95145 0.89625 1.48052 1.12337 1.63637 1.07725 1.19603 0.76378 0.96495 0.97037 1.22220 0.97441 0.94681 1.50446 0.92553 1.25713 0.91932 1.06107 0.94144 1.70820 1.31730 1.10138 1.41073 0.83617 0.76303 0.74473 0.76569 1.20645 1.21178 1.21452 1.20377 0.88443 0.76053 0.83754 1.90579 1.18440 1.52748 1.83566 1.21149 1.00016 0.96701 0.93495 0.87919 1.21652 0.99124 0.97058 0.97426 1.21527 1.00517 0.96752 0.96054 1.22509 1.00086 0.89142 0.96825 1.61808 1.50915 1.03247 1.09583 1.23187 0.95066 0.97186 0.97324 1.21964 0.84656 0.88713 0.83029 1.92902 1.93713 1.62146 1.70011 1.93012 1.58660 1.94638 1.71234 1.21889 0.93228 0.98783 0.91125 0.89130 0.89060 0.86743 0.91147 0.90246 0.95050 0.95746 0.92059 0.93045 0.87660 0.91414 0.90592 0.95059 0.89352 0.88042 0.91678 0.87410 0.91003 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 14.32 29.01 0.42 -2.74 16 2 C -0.15 -2.70 9.80 -36.03 -0.35 -3.05 16 3 C 0.15 2.76 5.81 -5.20 -0.03 2.73 16 4 N -0.59 -12.21 2.46 -176.43 -0.43 -12.65 16 5 C 0.23 5.13 4.34 -5.19 -0.02 5.11 16 6 C -0.61 -15.15 7.31 -34.44 -0.25 -15.40 16 7 H 0.06 1.45 7.54 -52.48 -0.40 1.05 16 8 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 9 N -0.90 -25.02 13.65 55.43 0.76 -24.26 16 10 Si 1.06 23.61 29.90 -169.99 -5.08 18.53 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.53 10.89 6.65 -10.98 -0.07 10.82 16 15 O -0.57 -12.74 15.87 5.56 0.09 -12.65 16 16 C -0.09 -1.72 2.08 -91.69 -0.19 -1.92 16 17 H 0.10 2.07 5.94 -51.93 -0.31 1.76 16 18 C -0.11 -2.13 5.27 -26.60 -0.14 -2.27 16 19 C -0.11 -1.79 6.09 -26.64 -0.16 -1.96 16 20 C 0.04 0.60 5.23 -3.83 -0.02 0.58 16 21 N -0.53 -7.67 4.40 -234.67 -1.03 -8.70 16 22 C 0.00 0.02 5.39 -3.82 -0.02 0.00 16 23 C 0.27 2.74 5.59 37.16 0.21 2.95 16 24 F -0.21 -2.48 14.72 2.25 0.03 -2.45 16 25 F -0.19 -2.63 17.15 2.25 0.04 -2.59 16 26 C 0.08 1.24 4.32 -3.83 -0.02 1.22 16 27 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.09 1.41 7.84 -52.48 -0.41 1.00 16 29 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.07 1.26 7.29 -51.92 -0.38 0.88 16 31 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 32 H 0.03 0.74 5.74 -51.93 -0.30 0.45 16 33 H 0.02 0.58 7.67 -51.93 -0.40 0.18 16 34 H 0.27 7.37 7.22 -40.82 -0.29 7.08 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 2.25 5.58 -51.93 -0.29 1.96 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 1.22 5.50 -51.93 -0.29 0.94 16 41 H 0.10 0.92 7.77 -51.93 -0.40 0.52 16 42 H 0.07 0.60 7.98 -51.93 -0.41 0.19 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 45 H 0.04 0.75 7.83 -51.93 -0.41 0.35 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -29.33 363.59 -7.77 -37.10 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.86 Total: 5.53 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.76 Total: -3.33 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.71 Total: -45.62 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.07 Total: -5.04 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.33 -7.77 -37.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868512433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.606 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds