Wall clock time and date at job start Tue Mar 31 2020 12:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99957 * 2 1 4 4 N 1.46499 * 109.47293 * 120.84424 * 3 2 1 5 5 C 1.46500 * 119.99932 * 94.87847 * 4 3 2 6 6 C 1.50707 * 109.47118 * 269.61870 * 5 4 3 7 7 H 1.07999 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00063 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99954 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46768 * 59.99979 * 10 8 6 12 12 H 1.48495 * 109.47016 * 299.99994 * 10 8 6 13 13 H 1.48500 * 109.46644 * 180.02562 * 10 8 6 14 14 C 1.34771 * 119.99979 * 274.87719 * 4 3 2 15 15 O 1.21279 * 120.00353 * 4.82680 * 14 4 3 16 16 C 1.50701 * 119.99933 * 184.82817 * 14 4 3 17 17 H 1.08998 * 109.50370 * 307.05536 * 16 14 4 18 18 C 1.53122 * 109.50448 * 67.13026 * 16 14 4 19 19 C 1.53117 * 109.16205 * 177.59363 * 18 16 14 20 20 C 1.53032 * 109.27856 * 302.34622 * 19 18 16 21 21 N 1.46843 * 109.52403 * 59.18052 * 20 19 18 22 22 C 1.46906 * 111.00033 * 174.15717 * 21 20 19 23 23 C 1.52992 * 109.47117 * 282.73689 * 22 21 20 24 24 F 1.39903 * 109.47364 * 305.39468 * 23 22 21 25 25 F 1.39905 * 109.47392 * 65.39783 * 23 22 21 26 26 C 1.46847 * 111.23165 * 298.27648 * 21 20 19 27 27 H 1.07996 * 120.00338 * 5.03971 * 1 2 3 28 28 H 1.08001 * 119.99874 * 185.03286 * 1 2 3 29 29 H 1.08000 * 120.00302 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47564 * 0.84276 * 3 2 1 31 31 H 1.09002 * 109.47240 * 240.84700 * 3 2 1 32 32 H 1.08996 * 109.47527 * 149.61891 * 5 4 3 33 33 H 1.08999 * 109.47565 * 29.61892 * 5 4 3 34 34 H 0.97005 * 120.00117 * 359.97438 * 9 8 6 35 35 H 1.08998 * 109.52503 * 297.50211 * 18 16 14 36 36 H 1.09000 * 109.52239 * 57.62489 * 18 16 14 37 37 H 1.08994 * 109.50032 * 62.29003 * 19 18 16 38 38 H 1.09005 * 109.50136 * 182.36683 * 19 18 16 39 39 H 1.09001 * 109.46105 * 179.19720 * 20 19 18 40 40 H 1.09003 * 109.46514 * 299.17155 * 20 19 18 41 41 H 1.08999 * 109.46996 * 42.74107 * 22 21 20 42 42 H 1.09004 * 109.46465 * 162.73315 * 22 21 20 43 43 H 1.09007 * 109.47061 * 185.39912 * 23 22 21 44 44 H 1.09004 * 109.43092 * 301.68490 * 26 21 20 45 45 H 1.08998 * 109.49898 * 181.71797 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9209 1.3740 1.1858 5 6 4.3245 0.9631 1.0997 6 6 4.4389 -0.5045 1.4226 7 1 3.5547 -1.0740 1.6679 8 6 5.6725 -1.1201 1.4049 9 7 6.7493 -0.4265 1.1068 10 14 5.8145 -2.9391 1.8058 11 1 5.0079 -3.7238 0.8369 12 1 5.3113 -3.1835 3.1814 13 1 7.2372 -3.3556 1.7184 14 6 2.4185 1.8154 2.3559 15 8 1.2371 2.0725 2.4502 16 6 3.3249 1.9896 3.5472 17 1 3.8751 1.0655 3.7241 18 6 4.3121 3.1284 3.2764 19 6 5.1890 3.3384 4.5139 20 6 4.2967 3.6401 5.7201 21 7 3.3713 2.5210 5.9381 22 6 2.5937 2.7131 7.1696 23 6 3.4659 2.3776 8.3809 24 9 3.9869 1.0871 8.2374 25 9 4.5163 3.2975 8.4685 26 6 2.4867 2.3295 4.7817 27 1 -0.5400 0.9316 -0.0822 28 1 -0.5400 -0.9317 0.0821 29 1 1.8500 -0.9353 0.0004 30 1 1.3553 2.1336 0.0151 31 1 2.6787 1.3695 -0.8975 32 1 4.9160 1.5389 1.8115 33 1 4.6945 1.1430 0.0904 34 1 6.6757 0.5182 0.8990 35 1 4.9407 2.8706 2.4240 36 1 3.7616 4.0437 3.0593 37 1 5.7685 2.4356 4.7066 38 1 5.8657 4.1756 4.3426 39 1 4.9173 3.7760 6.6058 40 1 3.7276 4.5505 5.5322 41 1 2.2658 3.7506 7.2341 42 1 1.7233 2.0571 7.1556 43 1 2.8629 2.4271 9.2877 44 1 1.9256 3.2459 4.5986 45 1 1.7930 1.5137 4.9854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868512434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:40 Heat of formation + Delta-G solvation = -116.901918 kcal Electronic energy + Delta-G solvation = -28192.655903 eV Core-core repulsion = 24074.156068 eV Total energy + Delta-G solvation = -4118.499835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.89569 -46.88189 -39.93625 -38.07820 -35.53806 -34.18516 -33.27573 -32.13136 -30.73093 -29.18138 -27.05975 -25.83486 -24.25681 -23.28755 -22.78505 -22.02169 -20.04813 -19.33744 -18.47992 -17.66539 -17.29880 -17.15194 -16.41366 -16.31211 -15.53791 -15.07327 -14.80795 -14.71076 -14.16909 -13.97508 -13.80552 -13.76159 -13.37809 -13.26790 -13.22929 -12.98342 -12.67012 -12.62074 -12.40780 -12.18531 -11.87923 -11.72449 -11.38500 -11.25122 -11.09485 -10.86678 -10.75996 -10.58687 -10.49836 -10.29580 -10.14533 -9.96046 -9.24034 -9.19764 -8.78005 -8.45949 -8.33380 -7.71878 -6.48280 -4.23503 2.66377 3.32616 3.39842 3.42596 3.53901 3.59672 3.85040 4.08752 4.19839 4.43542 4.46056 4.84067 4.93272 5.05602 5.21057 5.24116 5.30956 5.34515 5.38123 5.44904 5.50612 5.58741 5.67592 5.78784 5.84636 5.87828 5.96026 6.08272 6.10354 6.13473 6.36576 6.37312 6.40346 6.55644 6.65316 6.91692 7.01160 7.08092 7.08945 7.21918 7.39534 7.88706 8.12503 8.41364 8.68664 8.91055 9.46290 10.87673 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.004846 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.580958 B = 5776.941424 C = 7017.444504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.150 3.850 4 N -0.586 5.586 5 C 0.215 3.785 6 C -0.613 4.613 7 H 0.055 0.945 8 C 0.026 3.974 9 N -0.904 5.904 10 Si 1.065 2.935 11 H -0.288 1.288 12 H -0.286 1.286 13 H -0.281 1.281 14 C 0.526 3.474 15 O -0.572 6.572 16 C -0.099 4.099 17 H 0.118 0.882 18 C -0.117 4.117 19 C -0.113 4.113 20 C 0.042 3.958 21 N -0.532 5.532 22 C 0.003 3.997 23 C 0.270 3.730 24 F -0.193 7.193 25 F -0.207 7.207 26 C 0.084 3.916 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.040 0.960 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 8.098 9.312 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.169 4.169 3 C 0.027 3.973 4 N -0.316 5.316 5 C 0.095 3.905 6 C -0.651 4.651 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.540 5.540 10 Si 0.893 3.107 11 H -0.215 1.215 12 H -0.212 1.212 13 H -0.207 1.207 14 C 0.314 3.686 15 O -0.453 6.453 16 C -0.120 4.120 17 H 0.136 0.864 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.085 4.085 21 N -0.256 5.256 22 C -0.127 4.127 23 C 0.216 3.784 24 F -0.174 7.174 25 F -0.188 7.188 26 C -0.044 4.044 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.058 0.942 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.971 6.564 9.529 13.021 hybrid contribution -1.452 1.694 -0.351 2.259 sum -7.423 8.259 9.178 14.406 Atomic orbital electron populations 1.23665 0.95892 1.01041 1.02435 1.23396 0.95887 0.99643 0.97968 1.20341 0.93473 0.95066 0.88430 1.47994 1.13011 1.62207 1.08363 1.19861 0.76339 0.96672 0.97628 1.22292 0.96188 0.94319 1.52339 0.92691 1.25743 0.91819 1.06372 0.93991 1.70842 1.30367 1.09964 1.42822 0.83580 0.76177 0.74318 0.76637 1.21467 1.21186 1.20653 1.20343 0.87896 0.76209 0.84176 1.90582 1.16953 1.53581 1.84167 1.21189 0.96563 1.02267 0.91996 0.86432 1.21752 0.97497 0.96908 0.99275 1.21543 0.97494 1.02637 0.93383 1.22482 0.95212 0.90640 1.00184 1.61771 1.19046 1.42900 1.01916 1.23184 0.96542 1.02456 0.90493 1.21970 0.83906 0.72653 0.99862 1.93023 1.88444 1.38783 1.97190 1.92893 1.61837 1.66967 1.97143 1.21805 0.93237 1.00896 0.88449 0.89114 0.89125 0.86784 0.91209 0.90439 0.93662 0.95968 0.92243 0.89603 0.92647 0.90312 0.91333 0.89169 0.95109 0.91715 0.87891 0.87388 0.94182 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 14.31 29.02 0.42 -2.75 16 2 C -0.15 -2.78 9.81 -36.02 -0.35 -3.13 16 3 C 0.15 2.81 5.81 -5.19 -0.03 2.78 16 4 N -0.59 -12.23 2.45 -176.43 -0.43 -12.66 16 5 C 0.21 4.92 4.04 -5.19 -0.02 4.90 16 6 C -0.61 -15.85 9.19 -34.44 -0.32 -16.17 16 7 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 8 C 0.03 0.69 5.46 -17.82 -0.10 0.60 16 9 N -0.90 -25.36 13.65 55.43 0.76 -24.60 16 10 Si 1.06 24.34 29.90 -169.99 -5.08 19.26 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.53 10.88 6.92 -10.99 -0.08 10.80 16 15 O -0.57 -12.65 15.68 5.56 0.09 -12.57 16 16 C -0.10 -1.82 1.86 -91.69 -0.17 -1.99 16 17 H 0.12 2.51 7.57 -51.93 -0.39 2.11 16 18 C -0.12 -1.92 4.94 -26.61 -0.13 -2.05 16 19 C -0.11 -1.65 6.09 -26.65 -0.16 -1.82 16 20 C 0.04 0.57 5.23 -3.84 -0.02 0.55 16 21 N -0.53 -7.65 4.41 -234.67 -1.03 -8.68 16 22 C 0.00 0.03 5.39 -3.82 -0.02 0.01 16 23 C 0.27 2.77 5.59 37.15 0.21 2.98 16 24 F -0.19 -2.70 17.16 2.25 0.04 -2.66 16 25 F -0.21 -2.46 14.69 2.25 0.03 -2.43 16 26 C 0.08 1.35 4.04 -3.84 -0.02 1.34 16 27 H 0.09 1.42 7.84 -52.49 -0.41 1.01 16 28 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.11 2.28 8.01 -52.49 -0.42 1.86 16 30 H 0.07 1.26 7.30 -51.93 -0.38 0.88 16 31 H 0.08 1.35 7.83 -51.93 -0.41 0.95 16 32 H 0.05 1.03 3.87 -51.93 -0.20 0.83 16 33 H 0.02 0.53 7.72 -51.93 -0.40 0.13 16 34 H 0.27 7.33 7.22 -40.82 -0.29 7.03 16 35 H 0.09 1.52 5.30 -51.93 -0.28 1.25 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.19 5.48 -51.93 -0.28 0.90 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.59 7.98 -51.93 -0.41 0.18 16 42 H 0.10 0.99 7.77 -51.93 -0.40 0.58 16 43 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 45 H 0.08 1.32 7.92 -51.93 -0.41 0.91 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -30.19 364.30 -7.79 -37.97 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.85 Total: 4.82 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.79 Total: -3.95 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.71 Total: -45.94 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.19 -7.79 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868512434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.928 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds