Wall clock time and date at job start Tue Mar 31 2020 11:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47118 * 239.99584 * 3 2 1 5 5 H 1.48494 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47174 * 120.00172 * 3 2 1 7 7 C 1.37880 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99810 * 187.20927 * 7 2 1 9 9 C 1.50692 * 120.00349 * 7.21305 * 7 2 1 10 10 C 1.52995 * 115.55010 * 305.88630 * 9 7 2 11 11 N 1.46899 * 109.47142 * 302.94560 * 10 9 7 12 12 C 1.46843 * 110.99089 * 67.87332 * 11 10 9 13 13 C 1.53036 * 109.51852 * 174.15124 * 12 11 10 14 14 C 1.53127 * 109.27710 * 59.18056 * 13 12 11 15 15 C 1.53124 * 109.15724 * 302.34627 * 14 13 12 16 16 C 1.46841 * 110.99944 * 303.66567 * 11 10 9 17 17 H 1.09001 * 109.46241 * 65.83518 * 16 11 10 18 18 C 1.50694 * 109.46301 * 305.85164 * 16 11 10 19 19 O 1.21278 * 120.00550 * 330.72157 * 18 16 11 20 20 N 1.34783 * 119.99638 * 150.44590 * 18 16 11 21 21 C 1.46507 * 119.99735 * 180.02562 * 20 18 16 22 22 C 1.52996 * 109.46832 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47605 * 300.00011 * 22 21 20 24 24 F 1.39900 * 109.47441 * 60.00044 * 22 21 20 25 25 C 1.53003 * 117.50038 * 91.55408 * 9 7 2 26 26 C 1.52998 * 117.50169 * 160.21343 * 9 7 2 27 27 H 0.97005 * 119.99500 * 4.96301 * 1 2 3 28 28 H 1.09006 * 109.47224 * 182.94680 * 10 9 7 29 29 H 1.08999 * 109.47202 * 62.94974 * 10 9 7 30 30 H 1.08997 * 109.46654 * 54.13558 * 12 11 10 31 31 H 1.09005 * 109.45775 * 294.16170 * 12 11 10 32 32 H 1.08999 * 109.50202 * 299.24453 * 13 12 11 33 33 H 1.08995 * 109.50752 * 179.11657 * 13 12 11 34 34 H 1.08996 * 109.52162 * 182.44363 * 14 13 12 35 35 H 1.08999 * 109.52361 * 62.24982 * 14 13 12 36 36 H 1.08991 * 109.50578 * 297.71222 * 15 14 13 37 37 H 1.09008 * 109.49927 * 177.59433 * 15 14 13 38 38 H 0.96993 * 120.00514 * 359.97438 * 20 18 16 39 39 H 1.08996 * 109.47276 * 299.99904 * 21 20 18 40 40 H 1.08997 * 109.46959 * 60.00277 * 21 20 18 41 41 H 1.08997 * 109.47241 * 180.02562 * 22 21 20 42 42 H 1.08996 * 117.50316 * 215.00362 * 25 9 7 43 43 H 1.09005 * 117.49811 * 0.02629 * 25 9 7 44 44 H 1.09001 * 117.49891 * 359.97438 * 26 9 7 45 45 H 1.09001 * 117.50026 * 144.97103 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0780 -1.1979 0.1179 9 6 1.2599 -2.4941 -0.1627 10 6 0.1143 -2.7268 0.8243 11 7 0.6287 -2.6511 2.1982 12 6 1.0504 -1.2836 2.5273 13 6 1.4420 -1.2109 4.0049 14 6 2.5831 -2.1958 4.2745 15 6 2.1346 -3.6052 3.8779 16 6 1.7230 -3.6083 2.4039 17 1 2.5758 -3.3228 1.7880 18 6 1.2621 -4.9891 2.0143 19 8 0.0918 -5.2898 2.1183 20 7 2.1497 -5.8884 1.5450 21 6 1.7015 -7.2306 1.1657 22 6 2.8970 -8.0459 0.6686 23 9 3.4641 -7.4124 -0.4423 24 9 3.8510 -8.1433 1.6873 25 6 1.0901 -3.0374 -1.5829 26 6 2.0622 -3.7159 -0.6146 27 1 -0.4850 0.8370 -0.0727 28 1 -0.3189 -3.7122 0.6523 29 1 -0.6504 -1.9636 0.6800 30 1 0.2286 -0.5938 2.3351 31 1 1.9065 -1.0093 1.9108 32 1 0.5826 -1.4719 4.6224 33 1 1.7699 -0.1996 4.2453 34 1 2.8360 -2.1789 5.3346 35 1 3.4557 -1.9122 3.6862 36 1 1.2861 -3.9038 4.4933 37 1 2.9574 -4.3044 4.0275 38 1 3.0850 -5.6466 1.4576 39 1 1.2593 -7.7241 2.0311 40 1 0.9587 -7.1548 0.3717 41 1 2.5636 -9.0444 0.3860 42 1 0.1623 -3.5607 -1.8141 43 1 1.5173 -2.4548 -2.3991 44 1 3.1286 -3.5794 -0.7942 45 1 1.7743 -4.6855 -0.2083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878683391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:27 Heat of formation + Delta-G solvation = -101.112213 kcal Electronic energy + Delta-G solvation = -29411.087958 eV Core-core repulsion = 25293.272815 eV Total energy + Delta-G solvation = -4117.815142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.14511 -47.13468 -40.07168 -37.74301 -35.96785 -34.69596 -32.49256 -31.95668 -30.74515 -29.12610 -25.94554 -25.72350 -23.88621 -22.43498 -22.01489 -21.16282 -20.32288 -19.32803 -18.68993 -17.63048 -17.53725 -17.20832 -16.16732 -15.91468 -15.30980 -15.00696 -14.75710 -14.50417 -14.11739 -13.86271 -13.70833 -13.60922 -13.49807 -13.36125 -13.17409 -12.63788 -12.50715 -12.32885 -12.10576 -11.85529 -11.43585 -11.28487 -11.19390 -11.08304 -10.63516 -10.51822 -10.51348 -10.30077 -10.25758 -9.96704 -9.59589 -9.42168 -9.10534 -8.95898 -8.73713 -8.68215 -8.11461 -7.02371 -6.11864 -4.08291 3.06185 3.21283 3.22157 3.28908 3.31152 3.53317 3.97098 4.28771 4.39241 4.58558 4.89332 5.07843 5.15551 5.34408 5.39059 5.42731 5.44344 5.58050 5.74908 5.94197 6.03342 6.12384 6.22373 6.33229 6.38040 6.44667 6.47895 6.52316 6.58382 6.66558 6.68252 6.77022 6.86017 6.99442 7.20538 7.29705 7.44944 7.54000 7.62488 7.72230 7.87331 8.17642 8.35632 8.43837 8.64118 8.78600 9.40780 10.89659 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.005336 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.642076 B = 5246.361983 C = 6043.389226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.078 3.922 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.085 3.915 11 N -0.498 5.498 12 C 0.035 3.965 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.103 4.103 16 C 0.072 3.928 17 H 0.070 0.930 18 C 0.535 3.465 19 O -0.524 6.524 20 N -0.736 5.736 21 C 0.072 3.928 22 C 0.254 3.746 23 F -0.198 7.198 24 F -0.203 7.203 25 C -0.191 4.191 26 C -0.221 4.221 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.404 0.596 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -11.608 4.489 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.126 4.126 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.042 4.042 11 N -0.222 5.222 12 C -0.092 4.092 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.040 4.040 17 H 0.088 0.912 18 C 0.322 3.678 19 O -0.397 6.397 20 N -0.392 5.392 21 C -0.053 4.053 22 C 0.200 3.800 23 F -0.179 7.179 24 F -0.185 7.185 25 C -0.230 4.230 26 C -0.259 4.259 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.239 0.761 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.829 -11.793 4.980 13.362 hybrid contribution 1.733 1.103 -0.979 2.275 sum 5.562 -10.690 4.001 12.697 Atomic orbital electron populations 1.69868 1.05727 1.27124 1.47686 1.24893 0.94803 0.98561 0.94373 0.86827 0.79946 0.83507 0.78885 1.20312 1.21030 1.19822 1.20282 0.92789 0.89268 1.50272 0.92413 1.19758 0.95439 0.90961 0.91745 1.21944 0.97346 1.00523 0.84398 1.62241 1.29745 1.05057 1.25141 1.22769 1.04547 0.89183 0.92711 1.21751 0.97400 0.97616 0.99415 1.21503 0.98850 0.94838 0.99893 1.21500 1.00363 0.97531 0.94761 1.21493 0.96279 0.89587 0.96684 0.91197 1.20807 0.85490 0.86461 0.75033 1.90648 1.17262 1.79282 1.52554 1.45976 1.12680 1.12165 1.68369 1.22375 0.95383 0.84749 1.02835 1.22233 0.84458 0.98161 0.75141 1.93046 1.86783 1.84606 1.53485 1.93006 1.67499 1.97204 1.60760 1.22773 0.98621 1.04992 0.96565 1.23190 0.96511 0.97837 1.08341 0.92556 0.93871 0.87251 0.90040 0.88398 0.92654 0.92757 0.92750 0.92148 0.91261 0.92466 0.76109 0.88754 0.88628 0.86010 0.91996 0.90740 0.91123 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.48 9.99 55.43 0.55 -21.93 16 2 C 0.08 1.94 3.58 -17.82 -0.06 1.88 16 3 Si 0.88 19.72 29.55 -169.99 -5.02 14.70 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.49 -12.16 5.81 -34.44 -0.20 -12.36 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.02 0.53 0.95 -155.67 -0.15 0.38 16 10 C 0.09 2.03 4.65 -3.83 -0.02 2.01 16 11 N -0.50 -10.79 4.46 -228.09 -1.02 -11.80 16 12 C 0.03 0.74 3.78 -3.84 -0.01 0.73 16 13 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 14 C -0.11 -1.76 6.00 -26.60 -0.16 -1.92 16 15 C -0.10 -1.66 5.36 -26.65 -0.14 -1.80 16 16 C 0.07 1.35 1.58 -68.88 -0.11 1.24 16 17 H 0.07 1.38 6.31 -51.93 -0.33 1.06 16 18 C 0.53 9.69 4.21 -10.99 -0.05 9.64 16 19 O -0.52 -11.12 15.17 5.56 0.08 -11.03 16 20 N -0.74 -10.53 3.85 -60.29 -0.23 -10.76 16 21 C 0.07 0.81 5.91 -4.04 -0.02 0.78 16 22 C 0.25 2.29 5.42 37.16 0.20 2.49 16 23 F -0.20 -2.35 17.20 2.25 0.04 -2.31 16 24 F -0.20 -2.15 17.20 2.25 0.04 -2.11 16 25 C -0.19 -4.36 9.96 -26.69 -0.27 -4.63 16 26 C -0.22 -4.64 8.04 -26.70 -0.21 -4.86 16 27 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 28 H 0.04 1.06 6.07 -51.93 -0.32 0.74 16 29 H 0.11 2.90 6.05 -51.93 -0.31 2.59 16 30 H 0.08 1.94 6.80 -51.93 -0.35 1.59 16 31 H 0.10 2.28 4.21 -51.93 -0.22 2.07 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.40 5.40 8.36 -40.82 -0.34 5.06 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.08 1.47 4.72 -51.93 -0.24 1.23 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -28.50 346.44 -8.44 -36.93 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.73 Total: 11.87 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.37 Total: -8.78 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.69 Total: -44.50 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.08 Total: -4.42 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.50 -8.44 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878683391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.181 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds