Wall clock time and date at job start Tue Mar 31 2020 11:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32732 * 125.18398 * 2 1 4 4 C 1.32863 * 109.73911 * 179.97438 * 3 2 1 5 5 N 1.33786 * 132.41443 * 180.02562 * 4 3 2 6 6 C 1.31657 * 121.22459 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.78195 * 180.02562 * 6 5 4 8 8 C 1.39255 * 120.43123 * 359.77824 * 6 5 4 9 9 C 1.38152 * 119.01632 * 0.45636 * 8 6 5 10 10 N 1.37717 * 120.64210 * 179.81420 * 9 8 6 11 11 C 1.46497 * 120.00121 * 359.71676 * 10 9 8 12 12 C 1.53039 * 109.46133 * 205.00197 * 11 10 9 13 13 C 1.53189 * 109.31376 * 178.61667 * 12 11 10 14 14 N 1.46922 * 108.78036 * 54.63112 * 13 12 11 15 15 C 1.36936 * 120.63291 * 126.36671 * 14 13 12 16 16 H 1.08002 * 120.00172 * 333.39033 * 15 14 13 17 17 C 1.38812 * 120.00088 * 153.38853 * 15 14 13 18 18 N 1.31611 * 120.00091 * 158.91661 * 17 15 14 19 19 Si 1.86798 * 119.99879 * 339.18673 * 17 15 14 20 20 H 1.48503 * 109.47513 * 95.07229 * 19 17 15 21 21 H 1.48502 * 109.47210 * 215.07047 * 19 17 15 22 22 H 1.48503 * 109.47342 * 335.07379 * 19 17 15 23 23 C 1.46931 * 118.73721 * 306.64827 * 14 13 12 24 24 C 1.52759 * 109.00997 * 53.30446 * 23 14 13 25 25 N 1.36507 * 118.71467 * 359.53469 * 9 8 6 26 26 N 1.31068 * 125.18986 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46843 * 90.02837 * 1 2 3 28 28 H 1.08999 * 109.46968 * 210.02371 * 1 2 3 29 29 H 1.08994 * 109.47562 * 330.02559 * 1 2 3 30 30 H 1.08997 * 109.47244 * 89.99628 * 7 6 5 31 31 H 1.09008 * 109.46651 * 209.99871 * 7 6 5 32 32 H 1.08999 * 109.46750 * 329.99179 * 7 6 5 33 33 H 1.07997 * 120.48800 * 180.24132 * 8 6 5 34 34 H 0.97006 * 119.99746 * 179.71378 * 10 9 8 35 35 H 1.09005 * 109.44919 * 324.96521 * 11 10 9 36 36 H 1.08996 * 109.49649 * 58.66012 * 12 11 10 37 37 H 1.09003 * 109.49537 * 298.56422 * 12 11 10 38 38 H 1.09009 * 109.58476 * 294.84335 * 13 12 11 39 39 H 1.08996 * 109.70235 * 174.49337 * 13 12 11 40 40 H 0.97001 * 120.00195 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.58572 * 173.14146 * 23 14 13 42 42 H 1.08996 * 109.58363 * 293.56400 * 23 14 13 43 43 H 1.08995 * 109.56777 * 185.54817 * 24 23 14 44 44 H 1.09002 * 109.35886 * 65.49940 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2718 1.0848 0.0000 4 6 3.5524 0.7310 0.0006 5 7 4.6853 1.4427 0.0012 6 6 5.8621 0.8525 0.0022 7 6 7.1176 1.6861 0.0035 8 6 5.9543 -0.5370 0.0072 9 6 4.7933 -1.2856 0.0015 10 7 4.8455 -2.6618 0.0023 11 6 6.1410 -3.3457 0.0031 12 6 5.9815 -4.7406 -0.6060 13 6 7.3444 -5.4395 -0.6353 14 7 7.9079 -5.4343 0.7216 15 6 8.3187 -6.6001 1.3109 16 1 7.8730 -7.5394 1.0184 17 6 9.3080 -6.5747 2.2843 18 7 9.4214 -7.5737 3.1336 19 14 10.4735 -5.1190 2.3936 20 1 9.9614 -4.1489 3.3946 21 1 11.8192 -5.5922 2.8064 22 1 10.5665 -4.4586 1.0668 23 6 8.0164 -4.1553 1.4366 24 6 6.6511 -3.4701 1.4406 25 7 3.5933 -0.6349 0.0009 26 7 2.2623 -1.0711 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 7.4193 1.8870 1.0315 31 1 7.9130 1.1457 -0.5097 32 1 6.9284 2.6285 -0.5104 33 1 6.9192 -1.0221 0.0119 34 1 4.0243 -3.1783 0.0025 35 1 6.8550 -2.7713 -0.5872 36 1 5.5961 -4.6522 -1.6217 37 1 5.2865 -5.3240 -0.0021 38 1 8.0138 -4.9068 -1.3109 39 1 7.2229 -6.4675 -0.9766 40 1 10.1125 -7.5558 3.8140 41 1 8.3358 -4.3364 2.4629 42 1 8.7416 -3.5159 0.9334 43 1 6.7421 -2.4775 1.8816 44 1 5.9497 -4.0654 2.0252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881954633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:02 Heat of formation + Delta-G solvation = 157.890060 kcal Electronic energy + Delta-G solvation = -26549.705156 eV Core-core repulsion = 22926.103132 eV Total energy + Delta-G solvation = -3623.602024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.87260 -39.64377 -38.40168 -36.38432 -34.11675 -32.78238 -32.06752 -30.77566 -30.65880 -30.13751 -29.44698 -27.69340 -25.32995 -23.56757 -23.05085 -22.69369 -21.74564 -20.79743 -20.10851 -18.66340 -18.01347 -17.01435 -16.78417 -16.67101 -15.81974 -15.12877 -14.73777 -14.48519 -14.31501 -14.08020 -13.93924 -13.79341 -13.46124 -13.39627 -13.17396 -12.72635 -12.61018 -12.55001 -12.49365 -12.43824 -12.07285 -12.03155 -11.76976 -11.27926 -11.06444 -10.84326 -10.38648 -10.26530 -10.24150 -10.14036 -9.95449 -9.75446 -9.57621 -9.43333 -8.79979 -7.99604 -7.19360 -6.08173 -3.45858 0.63368 0.76493 1.61083 2.47824 2.73425 3.20566 3.25835 3.37290 3.39631 3.41967 3.98832 4.39461 4.43230 4.44401 4.65694 4.75241 4.91905 4.99900 5.01184 5.16184 5.25749 5.26943 5.33152 5.34431 5.37003 5.45921 5.51704 5.56848 5.73264 5.75095 5.83187 5.89091 5.95575 6.03451 6.05675 6.19375 6.30019 6.34691 6.40076 6.42937 6.61223 6.70645 7.05130 7.59419 7.78592 7.96350 8.18219 8.77137 9.56512 9.90681 11.07339 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.003447 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.843663 B = 8120.626148 C = 9020.551230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.273 3.727 3 N -0.543 5.543 4 C 0.490 3.510 5 N -0.517 5.517 6 C 0.265 3.735 7 C -0.107 4.107 8 C -0.330 4.330 9 C 0.496 3.504 10 N -0.694 5.694 11 C 0.151 3.849 12 C -0.142 4.142 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.267 4.267 16 H 0.087 0.913 17 C 0.025 3.975 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.302 1.302 22 H -0.268 1.268 23 C 0.129 3.871 24 C -0.149 4.149 25 N -0.366 5.366 26 N -0.354 5.354 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.414 0.586 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.062 0.938 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 14.679 -7.961 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.008 4.008 3 N -0.278 5.278 4 C 0.129 3.871 5 N -0.241 5.241 6 C 0.108 3.892 7 C -0.164 4.164 8 C -0.363 4.363 9 C 0.269 3.731 10 N -0.320 5.320 11 C 0.048 3.952 12 C -0.182 4.182 13 C 0.026 3.974 14 N -0.328 5.328 15 C -0.395 4.395 16 H 0.104 0.896 17 C -0.174 4.174 18 N -0.546 5.546 19 Si 0.711 3.289 20 H -0.216 1.216 21 H -0.230 1.230 22 H -0.193 1.193 23 C 0.003 3.997 24 C -0.190 4.190 25 N -0.151 5.151 26 N -0.186 5.186 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.251 0.749 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.830 14.963 -7.832 19.541 hybrid contribution 0.604 -0.384 0.287 0.771 sum -9.226 14.579 -7.545 18.831 Atomic orbital electron populations 1.20192 0.83096 1.04476 1.04150 1.24431 0.98384 0.85197 0.92788 1.70822 0.96605 1.27978 1.32444 1.22776 0.93639 0.77061 0.93590 1.67812 0.94719 1.34932 1.26614 1.21483 0.92858 0.90854 0.83958 1.20841 0.91441 0.99803 1.04309 1.21221 0.96574 0.93921 1.24560 1.18108 0.82420 0.84838 0.87746 1.45245 1.11585 1.01001 1.74162 1.21406 0.81818 0.93644 0.98312 1.22378 1.01779 0.93960 1.00047 1.20862 0.90282 0.99206 0.87001 1.44387 1.72946 1.03803 1.11646 1.18899 1.16025 0.86035 1.18524 0.89555 1.25281 0.98026 0.96757 0.97371 1.69835 1.34551 1.32924 1.17332 0.86973 0.81170 0.82707 0.78047 1.21596 1.22970 1.19296 1.21260 0.93082 0.87402 0.98004 1.22497 1.00643 1.00861 0.94984 1.48815 1.05271 1.09473 1.51542 1.78262 0.83543 1.21354 1.35422 0.89303 0.89560 0.89064 0.88915 0.89390 0.89510 0.81504 0.74941 0.89288 0.91693 0.90938 0.95388 0.90961 0.92598 0.90420 0.95184 0.91978 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.00 0.38 -0.14 16 2 C 0.27 3.84 8.09 -157.00 -1.27 2.57 16 3 N -0.54 -8.90 11.26 -11.80 -0.13 -9.04 16 4 C 0.49 8.04 9.00 -323.15 -2.91 5.13 16 5 N -0.52 -7.73 10.38 -10.18 -0.11 -7.83 16 6 C 0.27 3.10 6.81 -82.29 -0.56 2.54 16 7 C -0.11 -0.80 10.18 36.01 0.37 -0.43 16 8 C -0.33 -3.83 8.51 -39.24 -0.33 -4.16 16 9 C 0.50 6.64 7.74 -152.98 -1.18 5.46 16 10 N -0.69 -8.55 5.19 -53.49 -0.28 -8.83 16 11 C 0.15 1.92 2.11 -67.89 -0.14 1.78 16 12 C -0.14 -1.89 5.55 -26.61 -0.15 -2.03 16 13 C 0.15 2.55 6.52 -3.71 -0.02 2.53 16 14 N -0.60 -12.78 2.78 -172.58 -0.48 -13.26 16 15 C -0.27 -6.94 10.04 -15.06 -0.15 -7.09 16 16 H 0.09 2.41 8.05 -52.49 -0.42 1.99 16 17 C 0.03 0.69 5.23 -17.43 -0.09 0.60 16 18 N -0.90 -26.60 13.97 55.49 0.78 -25.82 16 19 Si 0.88 20.84 24.35 -169.99 -4.14 16.70 16 20 H -0.29 -6.58 6.70 56.52 0.38 -6.20 16 21 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.27 -6.07 6.48 56.52 0.37 -5.70 16 23 C 0.13 2.46 4.17 -3.93 -0.02 2.44 16 24 C -0.15 -2.27 5.56 -26.83 -0.15 -2.42 16 25 N -0.37 -5.60 3.93 -12.98 -0.05 -5.65 16 26 N -0.35 -5.34 12.76 32.39 0.41 -4.92 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.48 8.09 -51.92 -0.42 0.06 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.17 1.62 6.17 -52.49 -0.32 1.30 16 34 H 0.41 5.06 8.71 -40.82 -0.36 4.70 16 35 H 0.09 1.04 6.50 -51.93 -0.34 0.70 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.69 4.49 -51.93 -0.23 1.45 16 42 H 0.03 0.55 7.01 -51.93 -0.36 0.18 16 43 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -32.81 351.16 -11.21 -44.02 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.27 Total: 2.57 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -6.23 Total: 6.77 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: 0.14 Total: -75.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.81 -11.21 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881954633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.906 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds