Wall clock time and date at job start Tue Mar 31 2020 11:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32732 * 125.18398 * 2 1 4 4 C 1.32863 * 109.73911 * 179.97438 * 3 2 1 5 5 N 1.33786 * 132.41443 * 180.02562 * 4 3 2 6 6 C 1.31657 * 121.22459 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.78195 * 180.02562 * 6 5 4 8 8 C 1.39255 * 120.43123 * 359.77824 * 6 5 4 9 9 C 1.38152 * 119.01632 * 0.45636 * 8 6 5 10 10 N 1.37717 * 120.64210 * 179.81420 * 9 8 6 11 11 C 1.46497 * 120.00121 * 359.71676 * 10 9 8 12 12 C 1.53039 * 109.46133 * 205.00197 * 11 10 9 13 13 C 1.53189 * 109.31376 * 178.61667 * 12 11 10 14 14 N 1.46922 * 108.78036 * 54.63112 * 13 12 11 15 15 C 1.36936 * 120.63291 * 126.36671 * 14 13 12 16 16 H 1.08002 * 120.00172 * 333.39033 * 15 14 13 17 17 C 1.38812 * 120.00088 * 153.38853 * 15 14 13 18 18 N 1.31611 * 120.00091 * 158.91661 * 17 15 14 19 19 Si 1.86798 * 119.99879 * 339.18673 * 17 15 14 20 20 H 1.48503 * 109.47513 * 95.07229 * 19 17 15 21 21 H 1.48502 * 109.47210 * 215.07047 * 19 17 15 22 22 H 1.48503 * 109.47342 * 335.07379 * 19 17 15 23 23 C 1.46931 * 118.73721 * 306.64827 * 14 13 12 24 24 C 1.52759 * 109.00997 * 53.30446 * 23 14 13 25 25 N 1.36507 * 118.71467 * 359.53469 * 9 8 6 26 26 N 1.31068 * 125.18986 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46843 * 90.02837 * 1 2 3 28 28 H 1.08999 * 109.46968 * 210.02371 * 1 2 3 29 29 H 1.08994 * 109.47562 * 330.02559 * 1 2 3 30 30 H 1.08997 * 109.47244 * 89.99628 * 7 6 5 31 31 H 1.09008 * 109.46651 * 209.99871 * 7 6 5 32 32 H 1.08999 * 109.46750 * 329.99179 * 7 6 5 33 33 H 1.07997 * 120.48800 * 180.24132 * 8 6 5 34 34 H 0.97006 * 119.99746 * 179.71378 * 10 9 8 35 35 H 1.09005 * 109.44919 * 324.96521 * 11 10 9 36 36 H 1.08996 * 109.49649 * 58.66012 * 12 11 10 37 37 H 1.09003 * 109.49537 * 298.56422 * 12 11 10 38 38 H 1.09009 * 109.58476 * 294.84335 * 13 12 11 39 39 H 1.08996 * 109.70235 * 174.49337 * 13 12 11 40 40 H 0.97001 * 120.00195 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.58572 * 173.14146 * 23 14 13 42 42 H 1.08996 * 109.58363 * 293.56400 * 23 14 13 43 43 H 1.08995 * 109.56777 * 185.54817 * 24 23 14 44 44 H 1.09002 * 109.35886 * 65.49940 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2718 1.0848 0.0000 4 6 3.5524 0.7310 0.0006 5 7 4.6853 1.4427 0.0012 6 6 5.8621 0.8525 0.0022 7 6 7.1176 1.6861 0.0035 8 6 5.9543 -0.5370 0.0072 9 6 4.7933 -1.2856 0.0015 10 7 4.8455 -2.6618 0.0023 11 6 6.1410 -3.3457 0.0031 12 6 5.9815 -4.7406 -0.6060 13 6 7.3444 -5.4395 -0.6353 14 7 7.9079 -5.4343 0.7216 15 6 8.3187 -6.6001 1.3109 16 1 7.8730 -7.5394 1.0184 17 6 9.3080 -6.5747 2.2843 18 7 9.4214 -7.5737 3.1336 19 14 10.4735 -5.1190 2.3936 20 1 9.9614 -4.1489 3.3946 21 1 11.8192 -5.5922 2.8064 22 1 10.5665 -4.4586 1.0668 23 6 8.0164 -4.1553 1.4366 24 6 6.6511 -3.4701 1.4406 25 7 3.5933 -0.6349 0.0009 26 7 2.2623 -1.0711 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 7.4193 1.8870 1.0315 31 1 7.9130 1.1457 -0.5097 32 1 6.9284 2.6285 -0.5104 33 1 6.9192 -1.0221 0.0119 34 1 4.0243 -3.1783 0.0025 35 1 6.8550 -2.7713 -0.5872 36 1 5.5961 -4.6522 -1.6217 37 1 5.2865 -5.3240 -0.0021 38 1 8.0138 -4.9068 -1.3109 39 1 7.2229 -6.4675 -0.9766 40 1 10.1125 -7.5558 3.8140 41 1 8.3358 -4.3364 2.4629 42 1 8.7416 -3.5159 0.9334 43 1 6.7421 -2.4775 1.8816 44 1 5.9497 -4.0654 2.0252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881954633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:01 Heat of formation + Delta-G solvation = 138.426686 kcal Electronic energy + Delta-G solvation = -26550.549151 eV Core-core repulsion = 22926.103132 eV Total energy + Delta-G solvation = -3624.446019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.89606 -40.70415 -39.54107 -37.60209 -35.33976 -34.11868 -33.35270 -32.10735 -31.98699 -30.98424 -30.51325 -28.49430 -26.90269 -24.78270 -24.33857 -23.83848 -22.89562 -21.81008 -21.39926 -19.76211 -19.04680 -18.72291 -17.84307 -17.70512 -17.23598 -16.36652 -15.94949 -15.84683 -15.43380 -15.32285 -14.97853 -14.76732 -14.62493 -14.31177 -14.21169 -13.99730 -13.95753 -13.72389 -13.45643 -13.34396 -13.24932 -13.04927 -12.67105 -12.57666 -12.49502 -12.25442 -12.03420 -11.73575 -11.53584 -11.45752 -11.27021 -10.97937 -10.84475 -10.68220 -10.43651 -9.01952 -8.96657 -8.15136 -5.47891 -0.31635 -0.24844 0.62141 1.33964 1.46097 1.48405 1.54978 1.73001 2.35092 2.41284 2.44538 3.04858 3.05877 3.34132 3.55100 3.56718 3.62681 3.78263 4.04270 4.16136 4.24660 4.29197 4.41696 4.45730 4.59405 4.61417 4.66880 4.72263 4.76202 4.79078 4.84551 4.86755 4.92062 4.93286 4.96812 5.05207 5.15872 5.20898 5.33158 5.37910 5.43839 5.67641 5.86618 6.06029 6.13372 6.59502 6.92143 6.93752 7.62962 8.00168 9.04536 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.003447 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.843663 B = 8120.626148 C = 9020.551230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.267 3.733 3 N -0.575 5.575 4 C 0.469 3.531 5 N -0.541 5.541 6 C 0.264 3.736 7 C -0.105 4.105 8 C -0.319 4.319 9 C 0.480 3.520 10 N -0.689 5.689 11 C 0.163 3.837 12 C -0.130 4.130 13 C 0.148 3.852 14 N -0.620 5.620 15 C -0.250 4.250 16 H 0.049 0.951 17 C -0.041 4.041 18 N -0.961 5.961 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.318 1.318 22 H -0.243 1.243 23 C 0.123 3.877 24 C -0.140 4.140 25 N -0.373 5.373 26 N -0.374 5.374 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.195 0.805 34 H 0.413 0.587 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.260 0.740 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 17.299 -9.558 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 N -0.311 5.311 4 C 0.108 3.892 5 N -0.267 5.267 6 C 0.109 3.891 7 C -0.162 4.162 8 C -0.351 4.351 9 C 0.254 3.746 10 N -0.315 5.315 11 C 0.060 3.940 12 C -0.170 4.170 13 C 0.023 3.977 14 N -0.345 5.345 15 C -0.380 4.380 16 H 0.067 0.933 17 C -0.235 4.235 18 N -0.607 5.607 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.247 1.247 22 H -0.166 1.166 23 C -0.002 4.002 24 C -0.180 4.180 25 N -0.159 5.159 26 N -0.206 5.206 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.212 0.788 34 H 0.250 0.750 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.418 17.625 -9.476 22.116 hybrid contribution 0.400 -1.217 0.736 1.477 sum -9.018 16.408 -8.740 20.662 Atomic orbital electron populations 1.20420 0.79941 1.05650 1.05632 1.25327 1.00150 0.84374 0.91513 1.70803 0.97252 1.29284 1.33779 1.23075 0.94178 0.77749 0.94156 1.67910 0.95327 1.35572 1.27869 1.22220 0.93137 0.91620 0.82135 1.21035 0.89957 0.99615 1.05576 1.21611 0.96898 0.93886 1.22704 1.18459 0.82435 0.85214 0.88517 1.45032 1.11321 1.00674 1.74436 1.21248 0.82380 0.93657 0.96745 1.22199 0.99348 0.93786 1.01672 1.21053 0.92098 0.99629 0.84936 1.44502 1.73251 1.03049 1.13649 1.18837 1.14746 0.86845 1.17541 0.93310 1.25987 1.00064 0.99926 0.97545 1.69993 1.35745 1.36047 1.18932 0.85891 0.77599 0.79582 0.79312 1.20286 1.24714 1.16649 1.21318 0.95694 0.86850 0.96344 1.22329 0.97921 1.00992 0.96753 1.48867 1.05749 1.09411 1.51823 1.78192 0.83798 1.22113 1.36540 0.87501 0.88165 0.88020 0.87465 0.86605 0.89335 0.78841 0.74979 0.86724 0.88720 0.92413 0.92912 0.92102 0.93089 0.93374 0.92784 0.89889 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.51 71.24 0.75 -0.17 16 2 C 0.27 7.33 8.09 138.68 1.12 8.45 16 3 N -0.57 -18.69 11.26 -191.25 -2.15 -20.84 16 4 C 0.47 15.03 9.00 261.61 2.35 17.39 16 5 N -0.54 -15.39 10.38 -186.12 -1.93 -17.32 16 6 C 0.26 5.36 6.81 42.83 0.29 5.65 16 7 C -0.10 -1.14 10.18 71.24 0.73 -0.41 16 8 C -0.32 -6.15 8.51 22.49 0.19 -5.96 16 9 C 0.48 11.58 7.74 131.99 1.02 12.60 16 10 N -0.69 -14.99 5.19 -323.13 -1.68 -16.67 16 11 C 0.16 3.51 2.11 45.02 0.09 3.61 16 12 C -0.13 -3.08 5.55 30.67 0.17 -2.91 16 13 C 0.15 4.56 6.52 86.36 0.56 5.13 16 14 N -0.62 -25.31 2.78 -699.93 -1.95 -27.26 16 15 C -0.25 -13.22 10.04 84.03 0.84 -12.38 16 16 H 0.05 2.87 8.05 -2.91 -0.02 2.85 16 17 C -0.04 -2.27 5.23 84.86 0.44 -1.82 16 18 N -0.96 -58.80 13.97 21.65 0.30 -58.50 16 19 Si 0.95 42.86 24.35 68.60 1.67 44.53 16 20 H -0.28 -11.79 6.70 99.48 0.67 -11.12 16 21 H -0.32 -15.07 7.11 99.48 0.71 -14.37 16 22 H -0.24 -9.85 6.48 99.48 0.64 -9.20 16 23 C 0.12 4.34 4.17 86.22 0.36 4.70 16 24 C -0.14 -3.82 5.56 30.53 0.17 -3.65 16 25 N -0.37 -10.97 3.93 -194.98 -0.77 -11.73 16 26 N -0.37 -11.00 12.76 -51.44 -0.66 -11.66 16 27 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 0.64 8.09 -2.38 -0.02 0.62 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.19 2.60 6.17 -2.91 -0.02 2.58 16 34 H 0.41 9.28 8.71 -92.70 -0.81 8.47 16 35 H 0.12 1.99 6.50 -2.38 -0.02 1.97 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.05 2.00 4.49 -2.39 -0.01 1.99 16 42 H 0.05 1.68 7.01 -2.39 -0.02 1.66 16 43 H 0.08 1.95 7.68 -2.39 -0.02 1.93 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.49 351.16 2.06 -73.43 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.12 Total: 15.79 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 9.10 Total: 30.23 kcal Atomic # 7 Polarization: -155.15 SS G_CDS: -8.83 Total: -163.98 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.67 Total: 44.53 kcal Total: -75.49 2.06 -73.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881954633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.858 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds