Wall clock time and date at job start Tue Mar 31 2020 11:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84963 * 2 1 4 4 N 1.46499 * 109.47159 * 50.33432 * 3 2 1 5 5 C 1.34774 * 120.00464 * 179.97438 * 4 3 2 6 6 O 1.21591 * 119.99406 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00240 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99795 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.43624 * 323.91480 * 8 7 5 10 10 C 1.54269 * 110.48619 * 86.45404 * 8 7 5 11 11 C 1.53875 * 106.59675 * 142.28477 * 10 8 7 12 12 C 1.54268 * 106.59807 * 0.02562 * 11 10 8 13 13 H 1.09007 * 110.48686 * 95.20051 * 12 11 10 14 14 C 1.50706 * 110.48318 * 217.70664 * 12 11 10 15 15 H 1.08005 * 119.99758 * 116.75944 * 14 12 11 16 16 C 1.37871 * 120.00102 * 296.75829 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 C 1.54880 * 104.31309 * 336.45201 * 12 11 10 23 23 C 1.53776 * 113.61198 * 131.19929 * 2 1 3 24 24 C 1.53950 * 87.02211 * 89.22949 * 23 2 1 25 25 F 1.39902 * 113.53664 * 270.80904 * 24 23 2 26 26 F 1.39902 * 113.67138 * 139.93258 * 24 23 2 27 27 C 1.53778 * 113.61404 * 228.80629 * 2 1 3 28 28 H 1.09007 * 109.47143 * 69.66527 * 1 2 3 29 29 H 1.08998 * 109.47112 * 189.66335 * 1 2 3 30 30 H 1.08996 * 109.47468 * 309.66738 * 1 2 3 31 31 H 1.08996 * 109.47662 * 290.33130 * 3 2 1 32 32 H 1.09003 * 109.47034 * 170.33271 * 3 2 1 33 33 H 0.97001 * 120.00176 * 359.97438 * 4 3 2 34 34 H 0.97001 * 120.00400 * 0.02562 * 7 5 4 35 35 H 1.08999 * 110.03179 * 23.00751 * 10 8 7 36 36 H 1.08992 * 110.02965 * 261.57224 * 10 8 7 37 37 H 1.08994 * 110.03659 * 240.71557 * 11 10 8 38 38 H 1.09004 * 110.03240 * 119.28738 * 11 10 8 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 40 40 H 1.09002 * 110.75807 * 156.19232 * 22 12 11 41 41 H 1.08998 * 110.75950 * 279.56218 * 22 12 11 42 42 H 1.09001 * 113.61416 * 203.75021 * 23 2 1 43 43 H 1.09002 * 113.61323 * 334.64942 * 23 2 1 44 44 H 1.09002 * 113.61602 * 25.34785 * 27 2 1 45 45 H 1.08999 * 113.61656 * 156.25575 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.5013 2.2023 1.0632 5 6 1.8713 3.4843 1.2532 6 8 2.7217 3.9833 0.5418 7 7 1.2979 4.2133 2.2310 8 6 1.6998 5.6070 2.4371 9 1 2.7669 5.7270 2.2504 10 6 0.8832 6.5450 1.5243 11 6 0.5984 7.8165 2.3428 12 6 1.2524 7.6070 3.7242 13 1 2.2464 8.0540 3.7474 14 6 0.3874 8.1912 4.8112 15 1 -0.0384 7.5476 5.5668 16 6 0.1396 9.5471 4.8412 17 7 0.6577 10.3308 3.9208 18 14 -0.9332 10.2709 6.1882 19 1 -2.3505 10.2735 5.7447 20 1 -0.8014 9.4518 7.4198 21 1 -0.5006 11.6632 6.4710 22 6 1.3462 6.0683 3.8740 23 6 2.1460 -0.9281 1.0602 24 6 2.0950 -2.0420 -0.0013 25 9 0.8942 -2.7599 -0.0005 26 9 3.2236 -2.8686 -0.0027 27 6 2.1460 -0.9280 -1.0603 28 1 -0.3634 0.3571 -0.9637 29 1 -0.3633 -1.0131 0.1725 30 1 -0.3634 0.6559 0.7910 31 1 1.9362 1.8835 -0.9636 32 1 3.1988 1.3513 0.1726 33 1 0.8226 1.8043 1.6306 34 1 0.6192 3.8153 2.7983 35 1 -0.0539 6.0664 1.2398 36 1 1.4604 6.7953 0.6342 37 1 -0.4768 7.9550 2.4555 38 1 1.0373 8.6840 1.8499 39 1 1.2145 9.9548 3.2211 40 1 2.1354 5.7959 4.5748 41 1 0.3890 5.6517 4.1875 42 1 3.1585 -0.6478 1.3506 43 1 1.4938 -1.1080 1.9149 44 1 1.4939 -1.1079 -1.9150 45 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:41 Heat of formation + Delta-G solvation = -129.526607 kcal Electronic energy + Delta-G solvation = -26496.890914 eV Core-core repulsion = 22377.843631 eV Total energy + Delta-G solvation = -4119.047283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.26584 -47.58810 -40.32080 -39.21076 -37.35743 -34.36369 -33.90900 -31.93696 -29.72512 -28.17605 -27.62863 -26.89799 -26.10971 -23.70520 -22.69099 -21.01161 -20.10783 -19.56340 -19.14259 -18.47839 -17.66668 -17.09905 -16.91594 -16.74087 -16.09310 -15.48393 -15.22459 -14.57781 -14.54450 -14.41102 -14.22735 -14.04127 -13.83728 -13.75113 -13.54278 -13.38406 -12.86161 -12.75108 -12.58332 -12.44517 -12.05106 -11.68129 -11.39416 -11.21105 -11.08306 -10.96256 -10.90948 -10.68790 -10.67028 -10.16047 -10.08877 -9.99562 -9.81766 -9.37856 -9.23473 -8.61444 -8.43512 -8.33196 -6.31868 -4.04679 2.69879 2.98957 3.28673 3.33830 3.42778 3.46046 3.61673 3.71735 3.73472 3.83196 4.34264 4.44554 4.53547 4.61253 4.79899 4.90763 5.05941 5.08625 5.25400 5.32625 5.37088 5.38621 5.44290 5.51233 5.56180 5.57667 5.70341 5.75970 6.17851 6.23339 6.35125 6.37920 6.53509 6.59651 6.72296 6.81572 6.90741 7.05725 7.18229 7.35731 7.67045 8.11074 8.24886 8.44801 8.72008 8.90529 9.67667 11.06392 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002108 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.584369 B =13280.818946 C =13556.988944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C 0.161 3.839 4 N -0.751 5.751 5 C 0.701 3.299 6 O -0.593 6.593 7 N -0.734 5.734 8 C 0.154 3.846 9 H 0.084 0.916 10 C -0.131 4.131 11 C -0.112 4.112 12 C 0.035 3.965 13 H 0.023 0.977 14 C -0.594 4.594 15 H 0.049 0.951 16 C 0.019 3.981 17 N -0.913 5.913 18 Si 1.069 2.931 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.111 4.111 23 C -0.157 4.157 24 C 0.254 3.746 25 F -0.178 7.178 26 F -0.191 7.191 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.273 0.727 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -24.895 -8.223 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C 0.036 3.964 4 N -0.408 5.408 5 C 0.401 3.599 6 O -0.471 6.471 7 N -0.387 5.387 8 C 0.050 3.950 9 H 0.102 0.898 10 C -0.170 4.170 11 C -0.151 4.151 12 C 0.016 3.984 13 H 0.041 0.959 14 C -0.632 4.632 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.550 5.550 18 Si 0.898 3.102 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.195 4.195 24 C 0.218 3.782 25 F -0.159 7.159 26 F -0.171 7.171 27 C -0.190 4.190 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.498 -23.028 -8.318 24.490 hybrid contribution -0.071 -2.117 -0.121 2.122 sum 0.427 -25.145 -8.440 26.527 Atomic orbital electron populations 1.21762 0.91486 1.03299 1.03242 1.21906 0.97089 0.94320 0.95899 1.20963 0.96826 0.87468 0.91151 1.45122 1.45898 1.11619 1.38206 1.16009 0.81740 0.80649 0.81503 1.90918 1.35664 1.71355 1.49130 1.45392 1.44132 1.13747 1.35425 1.21964 0.99059 0.77257 0.96738 0.89791 1.22564 0.98844 0.97281 0.98277 1.22363 1.01303 0.94353 0.97095 1.19558 0.96217 0.89560 0.93060 0.95885 1.21966 1.33706 0.95016 1.12557 0.93306 1.25764 0.98160 0.93954 1.00705 1.70753 1.31338 1.38649 1.14233 0.83547 0.75803 0.75885 0.75012 1.21578 1.21588 1.21067 1.22751 1.00117 0.99482 0.92583 1.24313 1.04761 0.92619 0.97827 1.22078 0.71694 0.83141 1.01301 1.92997 1.45092 1.80527 1.97271 1.93021 1.50939 1.75930 1.97258 1.24150 1.04805 0.92347 0.97721 0.91191 0.90971 0.91538 0.90979 0.91129 0.77097 0.77385 0.92855 0.92802 0.92308 0.93309 0.91477 0.92711 0.91900 0.86612 0.88543 0.88324 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.88 37.16 0.33 -0.44 16 2 C -0.09 -0.53 1.07 -153.70 -0.16 -0.69 16 3 C 0.16 1.33 5.12 -4.04 -0.02 1.31 16 4 N -0.75 -7.29 5.28 -65.23 -0.34 -7.63 16 5 C 0.70 10.20 8.56 -86.92 -0.74 9.46 16 6 O -0.59 -11.20 16.05 5.29 0.08 -11.12 16 7 N -0.73 -10.43 5.12 -56.99 -0.29 -10.72 16 8 C 0.15 2.74 3.16 -66.20 -0.21 2.54 16 9 H 0.08 1.63 7.66 -51.93 -0.40 1.23 16 10 C -0.13 -2.50 6.53 -25.61 -0.17 -2.67 16 11 C -0.11 -2.55 5.37 -25.61 -0.14 -2.69 16 12 C 0.04 0.84 2.41 -90.11 -0.22 0.63 16 13 H 0.02 0.60 8.00 -51.93 -0.42 0.19 16 14 C -0.59 -16.10 8.38 -34.44 -0.29 -16.38 16 15 H 0.05 1.31 7.77 -52.48 -0.41 0.90 16 16 C 0.02 0.52 5.34 -17.82 -0.10 0.43 16 17 N -0.91 -27.07 13.44 55.43 0.74 -26.32 16 18 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C -0.11 -2.16 5.90 -24.68 -0.15 -2.30 16 23 C -0.16 -0.90 7.01 -25.83 -0.18 -1.08 16 24 C 0.25 1.79 3.27 -25.83 -0.08 1.70 16 25 F -0.18 -1.48 15.52 2.25 0.03 -1.44 16 26 F -0.19 -1.70 17.41 2.25 0.04 -1.66 16 27 C -0.15 -0.82 7.02 -25.92 -0.18 -1.00 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 6.20 -51.93 -0.32 0.08 16 30 H 0.07 0.34 6.36 -51.93 -0.33 0.01 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.63 7.98 -51.93 -0.41 0.21 16 33 H 0.39 2.81 6.86 -40.82 -0.28 2.53 16 34 H 0.39 4.49 8.55 -40.82 -0.35 4.14 16 35 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.42 7.83 -51.93 -0.41 1.02 16 38 H 0.05 1.15 6.91 -51.93 -0.36 0.80 16 39 H 0.27 8.01 5.54 -40.82 -0.23 7.79 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.12 0.63 7.99 -51.93 -0.41 0.22 16 43 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.10 0.46 8.10 -51.93 -0.42 0.04 16 45 H 0.12 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -32.60 362.55 -8.56 -41.16 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.90 Total: 3.80 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.31 Total: -11.19 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.11 Total: -44.67 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.07 Total: -3.10 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.60 -8.56 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.369 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds