Wall clock time and date at job start Tue Mar 31 2020 11:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84963 * 2 1 4 4 N 1.46499 * 109.47159 * 50.33432 * 3 2 1 5 5 C 1.34774 * 120.00464 * 179.97438 * 4 3 2 6 6 O 1.21591 * 119.99406 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00240 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99795 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.43624 * 323.91480 * 8 7 5 10 10 C 1.54269 * 110.48619 * 86.45404 * 8 7 5 11 11 C 1.53875 * 106.59675 * 142.28477 * 10 8 7 12 12 C 1.54268 * 106.59807 * 0.02562 * 11 10 8 13 13 H 1.09007 * 110.48686 * 95.20051 * 12 11 10 14 14 C 1.50706 * 110.48318 * 217.70664 * 12 11 10 15 15 H 1.08005 * 119.99758 * 116.75944 * 14 12 11 16 16 C 1.37871 * 120.00102 * 296.75829 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 C 1.54880 * 104.31309 * 336.45201 * 12 11 10 23 23 C 1.53776 * 113.61198 * 131.19929 * 2 1 3 24 24 C 1.53950 * 87.02211 * 89.22949 * 23 2 1 25 25 F 1.39902 * 113.53664 * 270.80904 * 24 23 2 26 26 F 1.39902 * 113.67138 * 139.93258 * 24 23 2 27 27 C 1.53778 * 113.61404 * 228.80629 * 2 1 3 28 28 H 1.09007 * 109.47143 * 69.66527 * 1 2 3 29 29 H 1.08998 * 109.47112 * 189.66335 * 1 2 3 30 30 H 1.08996 * 109.47468 * 309.66738 * 1 2 3 31 31 H 1.08996 * 109.47662 * 290.33130 * 3 2 1 32 32 H 1.09003 * 109.47034 * 170.33271 * 3 2 1 33 33 H 0.97001 * 120.00176 * 359.97438 * 4 3 2 34 34 H 0.97001 * 120.00400 * 0.02562 * 7 5 4 35 35 H 1.08999 * 110.03179 * 23.00751 * 10 8 7 36 36 H 1.08992 * 110.02965 * 261.57224 * 10 8 7 37 37 H 1.08994 * 110.03659 * 240.71557 * 11 10 8 38 38 H 1.09004 * 110.03240 * 119.28738 * 11 10 8 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 40 40 H 1.09002 * 110.75807 * 156.19232 * 22 12 11 41 41 H 1.08998 * 110.75950 * 279.56218 * 22 12 11 42 42 H 1.09001 * 113.61416 * 203.75021 * 23 2 1 43 43 H 1.09002 * 113.61323 * 334.64942 * 23 2 1 44 44 H 1.09002 * 113.61602 * 25.34785 * 27 2 1 45 45 H 1.08999 * 113.61656 * 156.25575 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.5013 2.2023 1.0632 5 6 1.8713 3.4843 1.2532 6 8 2.7217 3.9833 0.5418 7 7 1.2979 4.2133 2.2310 8 6 1.6998 5.6070 2.4371 9 1 2.7669 5.7270 2.2504 10 6 0.8832 6.5450 1.5243 11 6 0.5984 7.8165 2.3428 12 6 1.2524 7.6070 3.7242 13 1 2.2464 8.0540 3.7474 14 6 0.3874 8.1912 4.8112 15 1 -0.0384 7.5476 5.5668 16 6 0.1396 9.5471 4.8412 17 7 0.6577 10.3308 3.9208 18 14 -0.9332 10.2709 6.1882 19 1 -2.3505 10.2735 5.7447 20 1 -0.8014 9.4518 7.4198 21 1 -0.5006 11.6632 6.4710 22 6 1.3462 6.0683 3.8740 23 6 2.1460 -0.9281 1.0602 24 6 2.0950 -2.0420 -0.0013 25 9 0.8942 -2.7599 -0.0005 26 9 3.2236 -2.8686 -0.0027 27 6 2.1460 -0.9280 -1.0603 28 1 -0.3634 0.3571 -0.9637 29 1 -0.3633 -1.0131 0.1725 30 1 -0.3634 0.6559 0.7910 31 1 1.9362 1.8835 -0.9636 32 1 3.1988 1.3513 0.1726 33 1 0.8226 1.8043 1.6306 34 1 0.6192 3.8153 2.7983 35 1 -0.0539 6.0664 1.2398 36 1 1.4604 6.7953 0.6342 37 1 -0.4768 7.9550 2.4555 38 1 1.0373 8.6840 1.8499 39 1 1.2145 9.9548 3.2211 40 1 2.1354 5.7959 4.5748 41 1 0.3890 5.6517 4.1875 42 1 3.1585 -0.6478 1.3506 43 1 1.4938 -1.1080 1.9149 44 1 1.4939 -1.1079 -1.9150 45 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:40 Heat of formation + Delta-G solvation = -149.632425 kcal Electronic energy + Delta-G solvation = -26497.762768 eV Core-core repulsion = 22377.843631 eV Total energy + Delta-G solvation = -4119.919137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84750 -48.19018 -41.32115 -40.02867 -38.89797 -35.54967 -35.33725 -33.66306 -30.35011 -29.93808 -28.76520 -27.45715 -27.18124 -25.67626 -23.35378 -22.12148 -21.69010 -20.95584 -20.11093 -19.35402 -18.85848 -18.38868 -17.66236 -17.39839 -17.24877 -16.62074 -16.36214 -15.76795 -15.62459 -15.59146 -15.15538 -15.02645 -14.80711 -14.63497 -14.45914 -14.25606 -14.17423 -13.97447 -13.89392 -13.23948 -12.98236 -12.85534 -12.70871 -12.48678 -12.32701 -12.15257 -11.91490 -11.90439 -11.77540 -11.71448 -11.66265 -11.38779 -11.32020 -11.18660 -10.51883 -10.43366 -10.32374 -9.73792 -8.52591 -6.26239 1.56198 1.64622 1.68610 1.81384 2.17129 2.48833 2.61885 2.79920 3.16784 3.22184 3.25730 3.29780 3.45365 3.81727 3.89402 3.92844 4.07337 4.09443 4.29972 4.50137 4.55349 4.62060 4.64476 4.67485 4.71537 4.72497 4.79190 4.89151 4.93707 4.95126 4.99778 5.01294 5.06947 5.18740 5.25661 5.32565 5.47899 5.49438 5.60342 5.73899 6.03046 6.16013 6.30014 6.71616 7.12422 7.54878 7.61197 8.85875 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002108 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.584369 B =13280.818946 C =13556.988944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C 0.160 3.840 4 N -0.729 5.729 5 C 0.699 3.301 6 O -0.637 6.637 7 N -0.724 5.724 8 C 0.171 3.829 9 H 0.068 0.932 10 C -0.119 4.119 11 C -0.102 4.102 12 C 0.021 3.979 13 H -0.007 1.007 14 C -0.602 4.602 15 H 0.052 0.948 16 C -0.035 4.035 17 N -0.943 5.943 18 Si 1.114 2.886 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.289 1.289 22 C -0.096 4.096 23 C -0.152 4.152 24 C 0.243 3.757 25 F -0.187 7.187 26 F -0.204 7.204 27 C -0.146 4.146 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 -26.915 -7.648 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C 0.036 3.964 4 N -0.387 5.387 5 C 0.399 3.601 6 O -0.519 6.519 7 N -0.378 5.378 8 C 0.065 3.935 9 H 0.086 0.914 10 C -0.158 4.158 11 C -0.140 4.140 12 C 0.002 3.998 13 H 0.011 0.989 14 C -0.640 4.640 15 H 0.070 0.930 16 C -0.233 4.233 17 N -0.581 5.581 18 Si 0.937 3.063 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.215 1.215 22 C -0.134 4.134 23 C -0.190 4.190 24 C 0.207 3.793 25 F -0.167 7.167 26 F -0.185 7.185 27 C -0.185 4.185 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.710 -25.133 -7.730 26.304 hybrid contribution 0.329 -1.543 -0.327 1.611 sum -0.382 -26.676 -8.057 27.869 Atomic orbital electron populations 1.21776 0.90948 1.03497 1.03568 1.21767 0.97299 0.92638 0.96344 1.21041 0.96769 0.88377 0.90191 1.44944 1.45551 1.09923 1.38266 1.16141 0.81228 0.81757 0.80942 1.90899 1.37673 1.72612 1.50705 1.45031 1.44586 1.12295 1.35913 1.21477 0.97890 0.79027 0.95143 0.91365 1.22442 0.99820 0.95855 0.97716 1.22134 0.99529 0.95484 0.96900 1.19586 0.94212 0.92832 0.93170 0.98865 1.22362 1.33304 0.95265 1.13036 0.93004 1.27181 0.98950 0.95115 1.02040 1.70867 1.32900 1.39143 1.15212 0.82959 0.74833 0.75194 0.73304 1.20119 1.19421 1.21512 1.22555 1.01182 0.95866 0.93835 1.24331 1.05242 0.91620 0.97830 1.22374 0.71002 0.83112 1.02836 1.92979 1.45532 1.80837 1.97395 1.92994 1.51655 1.76413 1.97402 1.24184 1.05568 0.91101 0.97609 0.91084 0.90923 0.90943 0.91741 0.91517 0.75184 0.75328 0.91193 0.93138 0.94143 0.95530 0.92725 0.91877 0.90549 0.86212 0.87593 0.87418 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.88 71.98 0.64 -0.53 16 2 C -0.08 -0.73 1.07 -51.66 -0.06 -0.79 16 3 C 0.16 2.32 5.12 86.38 0.44 2.77 16 4 N -0.73 -12.25 5.28 -478.54 -2.53 -14.77 16 5 C 0.70 18.93 8.56 179.06 1.53 20.46 16 6 O -0.64 -23.47 16.05 -4.00 -0.06 -23.53 16 7 N -0.72 -18.80 5.12 -452.48 -2.32 -21.12 16 8 C 0.17 5.87 3.16 46.11 0.15 6.01 16 9 H 0.07 2.62 7.66 -2.39 -0.02 2.60 16 10 C -0.12 -4.48 6.53 31.32 0.20 -4.28 16 11 C -0.10 -4.70 5.37 31.32 0.17 -4.54 16 12 C 0.02 1.03 2.41 -10.47 -0.03 1.00 16 13 H -0.01 -0.37 8.00 -2.38 -0.02 -0.39 16 14 C -0.60 -32.60 8.38 25.60 0.21 -32.38 16 15 H 0.05 2.72 7.77 -2.91 -0.02 2.70 16 16 C -0.03 -1.95 5.34 84.65 0.45 -1.50 16 17 N -0.94 -57.29 13.44 21.45 0.29 -57.00 16 18 Si 1.11 49.36 29.90 68.60 2.05 51.42 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 C -0.10 -3.61 5.90 31.92 0.19 -3.42 16 23 C -0.15 -1.39 7.01 31.18 0.22 -1.17 16 24 C 0.24 3.00 3.27 31.18 0.10 3.10 16 25 F -0.19 -2.80 15.52 44.97 0.70 -2.10 16 26 F -0.20 -3.39 17.41 44.97 0.78 -2.61 16 27 C -0.15 -1.28 7.02 31.12 0.22 -1.06 16 28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.64 6.20 -2.39 -0.01 0.63 16 30 H 0.07 0.51 6.36 -2.39 -0.02 0.49 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.07 7.98 -2.39 -0.02 1.05 16 33 H 0.41 4.42 6.86 -92.71 -0.64 3.79 16 34 H 0.41 7.93 8.55 -92.71 -0.79 7.14 16 35 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.98 7.83 -2.39 -0.02 1.96 16 38 H 0.03 1.30 6.91 -2.38 -0.02 1.29 16 39 H 0.26 16.02 5.54 -92.71 -0.51 15.50 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 2.66 7.93 -2.39 -0.02 2.65 16 42 H 0.12 1.04 7.99 -2.39 -0.02 1.02 16 43 H 0.11 0.79 8.10 -2.39 -0.02 0.77 16 44 H 0.11 0.77 8.10 -2.39 -0.02 0.75 16 45 H 0.13 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -71.51 362.55 3.20 -68.31 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.16 Total: 17.73 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.45 Total: -16.32 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -4.56 Total: -92.89 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.48 Total: -4.71 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.42 kcal Total: -71.51 3.20 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.327 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds