Wall clock time and date at job start Tue Mar 31 2020 11:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47445 * 2 1 4 4 C 1.53000 * 109.46806 * 239.99473 * 2 1 3 5 5 C 1.50701 * 109.46644 * 120.00272 * 2 1 3 6 6 C 1.38404 * 119.82852 * 59.99646 * 5 2 1 7 7 C 1.37886 * 120.16915 * 179.97438 * 6 5 2 8 8 C 1.39854 * 119.83068 * 0.02562 * 7 6 5 9 9 C 1.47166 * 120.17680 * 179.97438 * 8 7 6 10 10 C 1.34919 * 120.00280 * 180.02562 * 9 8 7 11 11 C 1.46233 * 119.99793 * 180.02562 * 10 9 8 12 12 O 1.21621 * 120.00229 * 359.97438 * 11 10 9 13 13 O 1.34907 * 119.99579 * 179.97438 * 11 10 9 14 14 C 1.42905 * 117.00058 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47264 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47130 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99653 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46942 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00266 * 21 19 17 24 24 H 1.48500 * 109.46999 * 240.00165 * 21 19 17 25 25 C 1.39861 * 119.65398 * 0.27748 * 8 7 6 26 26 C 1.37888 * 119.82181 * 359.41878 * 25 8 7 27 27 H 1.09003 * 109.46786 * 300.00329 * 1 2 3 28 28 H 1.09005 * 109.46659 * 59.99812 * 1 2 3 29 29 H 1.08992 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47371 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47312 * 299.99773 * 3 2 1 32 32 H 1.09003 * 109.47398 * 60.00045 * 3 2 1 33 33 H 1.09000 * 109.47598 * 300.00480 * 4 2 1 34 34 H 1.09005 * 109.46927 * 60.00879 * 4 2 1 35 35 H 1.09001 * 109.46851 * 180.02562 * 4 2 1 36 36 H 1.07994 * 119.91461 * 359.97438 * 6 5 2 37 37 H 1.08005 * 120.08661 * 180.02562 * 7 6 5 38 38 H 1.08004 * 120.00133 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.99880 * 0.02562 * 10 9 8 40 40 H 1.09001 * 109.47103 * 300.00387 * 14 13 11 41 41 H 1.09004 * 109.47054 * 59.99891 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99892 * 15 14 13 43 43 H 1.08992 * 109.47303 * 59.99596 * 15 14 13 44 44 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 45 45 H 1.09004 * 109.47298 * 59.99717 * 16 15 14 46 46 H 0.97007 * 119.99539 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.08799 * 179.72012 * 25 8 7 48 48 H 1.07996 * 119.91413 * 180.27931 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0322 -0.7105 1.2305 6 6 1.6956 -2.0356 1.4459 7 6 2.1517 -2.6926 2.5691 8 6 2.9559 -2.0165 3.4921 9 6 3.4464 -2.7102 4.6937 10 6 4.2217 -2.0544 5.5821 11 6 4.7095 -2.7440 6.7758 12 8 4.4160 -3.9085 6.9681 13 8 5.4851 -2.0884 7.6638 14 6 5.9255 -2.8234 8.8075 15 6 6.7864 -1.9207 9.6934 16 6 7.2584 -2.7079 10.9175 17 6 8.1069 -1.8189 11.7899 18 1 8.2908 -0.7949 11.5004 19 6 8.6477 -2.3128 12.9581 20 7 8.4233 -3.5597 13.3109 21 14 9.7000 -1.2111 14.0390 22 1 9.7997 0.1367 13.4237 23 1 9.0784 -1.0965 15.3828 24 1 11.0580 -1.7976 14.1701 25 6 3.2865 -0.6757 3.2704 26 6 2.8278 -0.0344 2.1392 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6769 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 1.0741 -2.5562 0.7325 37 1 1.8885 -3.7268 2.7357 38 1 3.1851 -3.7441 4.8649 39 1 4.4820 -1.0203 5.4116 40 1 5.0599 -3.1683 9.3732 41 1 6.5133 -3.6822 8.4832 42 1 7.6520 -1.5755 9.1280 43 1 6.1984 -1.0622 10.0176 44 1 6.3930 -3.0534 11.4831 45 1 7.8467 -3.5662 10.5929 46 1 8.8041 -3.9072 14.1326 47 1 3.9034 -0.1455 3.9809 48 1 3.0858 0.9996 1.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914626239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:44 Heat of formation + Delta-G solvation = -80.123623 kcal Electronic energy + Delta-G solvation = -24229.554239 eV Core-core repulsion = 20634.586008 eV Total energy + Delta-G solvation = -3594.968230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41861 -40.07655 -37.32769 -36.50682 -33.95196 -33.72893 -31.67134 -31.58862 -29.58404 -27.86169 -27.72912 -27.16956 -25.00437 -23.31051 -22.76591 -21.86393 -20.39461 -19.86884 -19.26157 -17.94726 -16.81418 -16.59697 -16.27538 -16.03179 -15.36609 -15.23615 -14.76253 -14.67434 -14.44742 -14.15216 -13.99670 -13.77923 -13.34681 -13.33725 -12.80041 -12.67875 -12.48475 -12.25111 -12.17618 -12.15305 -12.10484 -11.82623 -11.61889 -11.49922 -11.11322 -10.97344 -10.90337 -10.65202 -10.60287 -10.49370 -10.38473 -10.31897 -9.67581 -9.49171 -9.32388 -9.12783 -8.50143 -8.37472 -6.02026 -4.04872 0.17183 1.05135 1.62464 2.98945 2.98976 3.31135 3.38466 3.43001 3.51359 4.07773 4.21745 4.43137 4.48224 4.50443 4.54998 4.59364 4.77218 4.94062 4.97223 5.03507 5.11900 5.13765 5.20650 5.27690 5.34015 5.39525 5.39597 5.45096 5.54818 5.60596 5.61986 5.64497 5.67869 5.71545 5.81073 5.81123 5.94741 6.05259 6.13746 6.22818 6.30018 6.53652 6.57367 6.57764 6.88528 7.01719 7.62865 7.73969 7.96263 7.98613 8.38098 9.01696 9.59348 11.09456 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.001579 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.881708 B =17729.842036 C =18380.755567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.059 4.059 6 C -0.120 4.120 7 C -0.090 4.090 8 C -0.080 4.080 9 C -0.018 4.018 10 C -0.183 4.183 11 C 0.490 3.510 12 O -0.516 6.516 13 O -0.348 6.348 14 C 0.066 3.934 15 C -0.108 4.108 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.095 4.095 26 C -0.124 4.124 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.131 0.869 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 7.156 -31.442 36.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.059 4.059 6 C -0.138 4.138 7 C -0.108 4.108 8 C -0.080 4.080 9 C -0.037 4.037 10 C -0.202 4.202 11 C 0.336 3.664 12 O -0.407 6.407 13 O -0.264 6.264 14 C -0.008 4.008 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.113 4.113 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.149 0.851 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.750 6.693 -31.201 36.040 hybrid contribution 0.631 0.300 0.859 1.107 sum -16.119 6.993 -30.342 35.062 Atomic orbital electron populations 1.21899 0.93488 1.02175 1.02068 1.19557 0.95851 0.95192 0.92665 1.21983 1.01344 0.94830 1.02148 1.21900 1.01383 1.00223 0.96127 1.20006 0.96414 0.93933 0.95506 1.20904 1.00828 0.94332 0.97734 1.21358 0.96117 0.99848 0.93481 1.18964 0.99906 0.94099 0.95057 1.22426 0.91271 0.99561 0.90394 1.22281 1.02679 1.01587 0.93607 1.21220 0.76367 0.85141 0.83674 1.90863 1.55840 1.17635 1.76343 1.86186 1.61430 1.45427 1.33337 1.23115 0.98713 0.95626 0.83339 1.21760 0.97596 0.98593 0.96624 1.19065 0.96453 0.95448 0.90459 1.21225 1.30873 0.97939 1.05882 0.92365 1.25035 0.96559 0.95105 0.97798 1.69981 1.45082 1.14236 1.24046 0.86491 0.80104 0.80777 0.80367 1.19677 1.20986 1.20980 1.21512 0.98697 0.93735 0.97350 1.21152 0.98382 1.00510 0.94116 0.92366 0.92218 0.92355 0.92102 0.92253 0.92100 0.92357 0.92220 0.92363 0.85805 0.85387 0.84455 0.84152 0.91755 0.91747 0.92158 0.92155 0.96214 0.96213 0.92974 0.85137 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.29 37.16 0.31 -0.35 16 2 C -0.03 -0.17 0.85 -155.66 -0.13 -0.30 16 3 C -0.15 -0.68 7.13 37.15 0.26 -0.41 16 4 C -0.14 -0.66 8.28 37.16 0.31 -0.35 16 5 C -0.06 -0.40 4.77 -104.50 -0.50 -0.90 16 6 C -0.12 -0.83 8.68 -39.65 -0.34 -1.18 16 7 C -0.09 -0.70 9.80 -39.11 -0.38 -1.09 16 8 C -0.08 -0.72 5.87 -105.06 -0.62 -1.34 16 9 C -0.02 -0.19 9.46 -37.14 -0.35 -0.54 16 10 C -0.18 -2.15 9.54 -37.55 -0.36 -2.51 16 11 C 0.49 7.86 7.87 33.94 0.27 8.13 16 12 O -0.52 -9.57 16.00 -19.36 -0.31 -9.88 16 13 O -0.35 -6.10 10.12 -41.06 -0.42 -6.52 16 14 C 0.07 1.26 5.38 37.16 0.20 1.46 16 15 C -0.11 -2.31 5.52 -26.73 -0.15 -2.46 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.10 -0.78 9.41 -39.10 -0.37 -1.15 16 26 C -0.12 -0.90 8.95 -39.64 -0.36 -1.26 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.26 7.37 -51.93 -0.38 -0.12 16 30 H 0.06 0.28 7.51 -51.93 -0.39 -0.11 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.28 7.50 -51.93 -0.39 -0.11 16 33 H 0.06 0.26 7.37 -51.93 -0.38 -0.12 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.12 0.65 7.07 -52.49 -0.37 0.28 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.14 1.43 7.52 -52.48 -0.39 1.03 16 39 H 0.14 1.34 6.08 -52.49 -0.32 1.02 16 40 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 41 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.13 0.93 6.17 -52.49 -0.32 0.60 16 48 H 0.13 0.75 5.87 -52.49 -0.31 0.44 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -32.38 395.71 -9.68 -42.06 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -7.87 Total: -4.56 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.76 Total: -17.45 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.73 Total: -16.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.38 -9.68 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914626239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.064 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds