Wall clock time and date at job start Tue Mar 31 2020 10:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48497 * 109.46912 * 274.06290 * 3 2 1 5 5 H 1.48493 * 109.47216 * 34.06360 * 3 2 1 6 6 H 1.48499 * 109.47263 * 154.06677 * 3 2 1 7 7 C 1.38814 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00077 * 197.52843 * 7 2 1 9 9 N 1.36938 * 119.99682 * 17.52736 * 7 2 1 10 10 C 1.46922 * 120.63191 * 28.01944 * 9 7 2 11 11 C 1.53197 * 108.77274 * 126.37104 * 10 9 7 12 12 C 1.53039 * 109.31523 * 54.63624 * 11 10 9 13 13 C 1.53041 * 109.53611 * 298.63596 * 12 11 10 14 14 H 1.09010 * 109.52403 * 301.39462 * 13 12 11 15 15 C 1.52997 * 109.49811 * 181.31838 * 13 12 11 16 16 C 1.53039 * 109.46218 * 180.16106 * 15 13 12 17 17 C 1.53194 * 109.31284 * 178.61168 * 16 15 13 18 18 N 1.46930 * 108.77477 * 54.63357 * 17 16 15 19 19 C 1.34780 * 120.63066 * 126.36574 * 18 17 16 20 20 O 1.21283 * 119.99808 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00387 * 179.97438 * 19 18 17 22 22 F 1.39893 * 109.47259 * 305.00711 * 21 19 18 23 23 F 1.39894 * 109.47337 * 185.00134 * 21 19 18 24 24 C 1.46919 * 118.74211 * 306.64560 * 18 17 16 25 25 C 1.52767 * 109.01006 * 53.30473 * 24 18 17 26 26 C 1.46931 * 120.62804 * 207.99711 * 9 7 2 27 27 H 0.96993 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.58951 * 246.15361 * 10 9 7 29 29 H 1.08997 * 109.58613 * 6.44559 * 10 9 7 30 30 H 1.09004 * 109.49771 * 174.58937 * 11 10 9 31 31 H 1.08998 * 109.49568 * 294.68219 * 11 10 9 32 32 H 1.09003 * 109.45905 * 178.61567 * 12 11 10 33 33 H 1.08994 * 109.45781 * 58.65379 * 12 11 10 34 34 H 1.09004 * 109.44592 * 300.12817 * 15 13 12 35 35 H 1.08995 * 109.50064 * 58.65941 * 16 15 13 36 36 H 1.09000 * 109.49823 * 298.55935 * 16 15 13 37 37 H 1.08991 * 109.58933 * 294.84695 * 17 16 15 38 38 H 1.09003 * 109.70311 * 174.49206 * 17 16 15 39 39 H 1.09000 * 109.46623 * 65.00265 * 21 19 18 40 40 H 1.08992 * 109.59185 * 173.14523 * 24 18 17 41 41 H 1.09005 * 109.58236 * 293.56682 * 24 18 17 42 42 H 1.08993 * 109.56551 * 185.55755 * 25 24 18 43 43 H 1.08997 * 109.35633 * 65.50301 * 25 24 18 44 44 H 1.08995 * 109.58524 * 113.84448 * 26 9 7 45 45 H 1.08993 * 109.70421 * 353.49154 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4117 2.0960 -1.3965 5 1 1.4932 2.6263 0.7842 6 1 3.5880 1.4170 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3733 -2.3607 -0.3561 10 6 0.2359 -2.3339 -1.2857 11 6 0.5165 -3.3058 -2.4362 12 6 0.8284 -4.6906 -1.8644 13 6 2.0775 -4.6112 -0.9836 14 1 2.9167 -4.2431 -1.5740 15 6 2.4075 -6.0022 -0.4389 16 6 3.6543 -5.9211 0.4449 17 6 3.9615 -7.3089 1.0163 18 7 4.0704 -8.2642 -0.0947 19 6 5.1645 -9.0399 -0.2286 20 8 6.0709 -8.9534 0.5726 21 6 5.2612 -10.0153 -1.3732 22 9 4.1449 -10.8584 -1.3630 23 9 6.4245 -10.7803 -1.2371 24 6 2.9669 -8.3535 -1.0605 25 6 2.6683 -6.9579 -1.6054 26 6 1.8146 -3.6542 0.1833 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6706 -2.6387 -0.7629 29 1 0.1092 -1.3254 -1.6792 30 1 -0.3595 -3.3677 -3.0820 31 1 1.3699 -2.9497 -3.0132 32 1 1.0043 -5.3899 -2.6819 33 1 -0.0157 -5.0354 -1.2672 34 1 1.5677 -6.3697 0.1508 35 1 3.4761 -5.2225 1.2623 36 1 4.5004 -5.5773 -0.1502 37 1 3.1566 -7.6155 1.6841 38 1 4.9018 -7.2798 1.5668 39 1 5.2944 -9.4679 -2.3152 40 1 3.2518 -9.0116 -1.8813 41 1 2.0790 -8.7471 -0.5653 42 1 1.7883 -6.9973 -2.2472 43 1 3.5236 -6.6044 -2.1812 44 1 1.0369 -4.0666 0.8259 45 1 2.7304 -3.5192 0.7586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961304806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:12 Heat of formation + Delta-G solvation = -125.362949 kcal Electronic energy + Delta-G solvation = -27637.978782 eV Core-core repulsion = 23519.112049 eV Total energy + Delta-G solvation = -4118.866733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.57101 -47.58280 -40.49877 -38.67248 -36.89409 -34.22444 -32.50349 -31.58945 -30.43133 -29.64522 -28.09100 -25.41175 -24.93359 -23.59373 -22.05680 -21.65494 -20.66581 -19.75674 -19.07789 -18.52863 -18.11206 -17.57326 -16.72125 -16.29580 -15.40483 -15.10489 -14.91454 -14.50411 -14.38396 -14.29299 -14.05441 -13.87144 -13.76818 -13.55042 -13.33200 -13.20875 -12.99774 -12.53547 -12.52037 -12.48092 -12.14134 -11.90910 -11.42686 -11.27906 -11.00593 -10.91145 -10.74415 -10.50229 -10.30916 -10.17365 -10.15977 -10.14053 -9.87916 -9.49703 -9.31406 -9.02781 -8.47220 -6.67337 -5.80043 -3.22382 1.81409 2.18824 3.30911 3.36281 3.43718 3.44774 3.55071 4.13651 4.23171 4.45748 4.48500 4.68515 4.71701 4.88453 5.08292 5.12433 5.29572 5.34814 5.47307 5.51786 5.53503 5.59822 5.65132 5.75486 5.82559 5.91709 5.95320 6.09584 6.17505 6.24304 6.36661 6.40944 6.43218 6.62261 6.68412 6.78914 6.83943 6.87751 7.00395 7.38743 7.44840 7.65966 7.78496 8.44193 9.20531 9.84428 10.41028 11.28216 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.002864 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.887506 B = 9773.937676 C =10401.582259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.103 4.103 13 C -0.097 4.097 14 H 0.065 0.935 15 C -0.080 4.080 16 C -0.131 4.131 17 C 0.110 3.890 18 N -0.591 5.591 19 C 0.472 3.528 20 O -0.508 6.508 21 C 0.257 3.743 22 F -0.187 7.187 23 F -0.176 7.176 24 C 0.099 3.901 25 C -0.133 4.133 26 C 0.153 3.847 27 H 0.253 0.747 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -18.846 -5.154 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.141 4.141 13 C -0.117 4.117 14 H 0.084 0.916 15 C -0.099 4.099 16 C -0.169 4.169 17 C -0.011 4.011 18 N -0.325 5.325 19 C 0.255 3.745 20 O -0.383 6.383 21 C 0.200 3.800 22 F -0.168 7.168 23 F -0.158 7.158 24 C -0.024 4.024 25 C -0.171 4.171 26 C 0.026 3.974 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.085 -18.667 -4.674 19.904 hybrid contribution 0.278 0.769 -0.124 0.827 sum 5.363 -17.898 -4.798 19.291 Atomic orbital electron populations 1.70041 1.05268 1.25448 1.53902 1.25028 0.95253 0.98388 1.00947 0.86298 0.79207 0.83820 0.77601 1.21505 1.21789 1.20385 1.19194 0.92725 0.84959 1.41339 0.91753 1.44038 1.36403 1.01345 1.49643 1.20765 0.88626 0.98284 0.87915 1.22182 0.99881 0.96364 0.99808 1.21481 0.97344 0.97246 0.98007 1.21682 0.97845 0.93425 0.98782 0.91610 1.21166 0.97264 0.95948 0.95561 1.22039 0.98595 0.95460 1.00769 1.21831 1.03421 0.88114 0.87766 1.48167 1.17417 1.38283 1.28614 1.20997 0.83448 0.83017 0.87034 1.90807 1.37637 1.67725 1.42106 1.21618 0.72531 0.84912 1.00924 1.93040 1.52303 1.73743 1.97757 1.93058 1.48376 1.77131 1.97189 1.21973 0.89763 0.98799 0.91819 1.22010 1.02739 0.93550 0.98796 1.20939 0.97302 0.86689 0.92428 0.93674 0.96620 0.89755 0.93515 0.92930 0.93617 0.92913 0.91002 0.89420 0.91377 0.90733 0.88826 0.84698 0.89912 0.90164 0.89694 0.91424 0.96724 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.22 55.49 0.62 -25.31 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 8 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.37 2.99 -172.33 -0.52 -14.88 16 10 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.55 4.86 -26.69 -0.13 -1.68 16 13 C -0.10 -1.47 1.92 -90.50 -0.17 -1.64 16 14 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 15 C -0.08 -0.90 1.74 -90.58 -0.16 -1.06 16 16 C -0.13 -1.45 5.05 -26.61 -0.13 -1.59 16 17 C 0.11 1.13 6.44 -3.71 -0.02 1.11 16 18 N -0.59 -5.77 2.98 -173.03 -0.52 -6.29 16 19 C 0.47 5.26 7.55 -10.98 -0.08 5.18 16 20 O -0.51 -7.63 16.03 5.55 0.09 -7.54 16 21 C 0.26 2.15 4.62 36.00 0.17 2.31 16 22 F -0.19 -1.60 15.55 2.25 0.04 -1.56 16 23 F -0.18 -1.91 16.95 2.25 0.04 -1.87 16 24 C 0.10 0.74 5.87 -3.93 -0.02 0.72 16 25 C -0.13 -1.16 5.03 -26.83 -0.14 -1.30 16 26 C 0.15 2.97 5.27 -3.71 -0.02 2.95 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 2.22 6.06 -51.93 -0.31 1.91 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.57 6.33 -51.93 -0.33 0.24 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.04 6.49 -51.93 -0.34 0.70 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.07 7.00 -51.93 -0.36 0.70 16 39 H 0.14 0.59 7.90 -51.93 -0.41 0.18 16 40 H 0.08 0.47 5.35 -51.93 -0.28 0.19 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.70 6.33 -51.93 -0.33 0.37 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.01 6.51 -51.93 -0.34 0.68 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.56 348.60 -8.05 -39.61 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.90 Total: -3.05 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.13 Total: -0.80 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.41 Total: -46.48 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.09 Total: -7.54 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.07 Total: -3.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.56 -8.05 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961304806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.756 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds