Wall clock time and date at job start Tue Mar 31 2020 12:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39906 * 109.46690 * 2 1 4 4 F 1.39902 * 109.47341 * 240.00221 * 2 1 3 5 5 C 1.50695 * 109.47001 * 119.99832 * 2 1 3 6 6 O 1.21279 * 120.00360 * 17.30910 * 5 2 1 7 7 N 1.34780 * 120.00024 * 197.31058 * 5 2 1 8 8 C 1.46962 * 120.65136 * 3.56772 * 7 5 2 9 9 C 1.53192 * 108.88841 * 233.53815 * 8 7 5 10 10 C 1.53044 * 109.31081 * 305.44497 * 9 8 7 11 11 C 1.53037 * 109.54008 * 61.36442 * 10 9 8 12 12 H 1.09006 * 109.49544 * 58.58492 * 11 10 9 13 13 C 1.53001 * 109.52452 * 178.66306 * 11 10 9 14 14 H 1.08998 * 109.87490 * 306.89763 * 13 11 10 15 15 C 1.54323 * 109.88309 * 185.87893 * 13 11 10 16 16 C 1.55151 * 102.94434 * 218.39441 * 15 13 11 17 17 C 1.54913 * 101.58262 * 35.50222 * 16 15 13 18 18 N 1.47022 * 109.87780 * 67.91348 * 13 11 10 19 19 C 1.36936 * 125.65157 * 298.31354 * 18 13 11 20 20 H 1.08000 * 120.00592 * 138.84488 * 19 18 13 21 21 C 1.38816 * 119.99769 * 318.83895 * 19 18 13 22 22 N 1.31616 * 120.00100 * 166.55697 * 21 19 18 23 23 Si 1.86802 * 119.99786 * 346.56000 * 21 19 18 24 24 H 1.48504 * 109.46858 * 87.18148 * 23 21 19 25 25 H 1.48507 * 109.46933 * 207.17757 * 23 21 19 26 26 H 1.48497 * 109.47535 * 327.17655 * 23 21 19 27 27 C 1.46920 * 120.63271 * 183.75442 * 7 5 2 28 28 H 1.08999 * 109.47232 * 299.99851 * 1 2 3 29 29 H 1.08997 * 109.47215 * 60.00061 * 1 2 3 30 30 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46635 * 113.75636 * 8 7 5 32 32 H 1.09000 * 109.71465 * 353.46569 * 8 7 5 33 33 H 1.09002 * 109.49693 * 185.49680 * 9 8 7 34 34 H 1.08994 * 109.52604 * 65.41346 * 9 8 7 35 35 H 1.09000 * 109.46095 * 301.34086 * 10 9 8 36 36 H 1.09005 * 109.45970 * 181.38913 * 10 9 8 37 37 H 1.09006 * 110.71758 * 336.75510 * 15 13 11 38 38 H 1.08992 * 110.71900 * 100.02810 * 15 13 11 39 39 H 1.09003 * 111.00844 * 153.57418 * 16 15 13 40 40 H 1.09001 * 111.00442 * 277.39176 * 16 15 13 41 41 H 1.09002 * 110.36928 * 81.83058 * 17 16 15 42 42 H 1.09005 * 110.36829 * 204.15606 * 17 16 15 43 43 H 0.96997 * 120.00359 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58533 * 6.60171 * 27 7 5 45 45 H 1.09005 * 109.58731 * 246.31824 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2891 -1.4339 1.8588 7 7 3.3075 -0.5415 1.6327 8 6 4.1980 0.3916 0.9283 9 6 5.4747 -0.3518 0.5229 10 6 6.0971 -1.0012 1.7611 11 6 5.1162 -2.0145 2.3554 12 1 4.8752 -2.7695 1.6070 13 6 5.7517 -2.6875 3.5736 14 1 6.7248 -3.0983 3.3044 15 6 4.8316 -3.8133 4.0908 16 6 4.9706 -3.6954 5.6316 17 6 5.1016 -2.1628 5.8157 18 7 5.9051 -1.7103 4.6613 19 6 6.6653 -0.5725 4.6108 20 1 6.2909 0.3466 5.0368 21 6 7.9175 -0.6005 4.0121 22 7 8.5346 0.5258 3.7243 23 14 8.7264 -2.2368 3.6149 24 1 8.2831 -2.6954 2.2738 25 1 10.2024 -2.0732 3.6192 26 1 8.3368 -3.2424 4.6357 27 6 3.8355 -1.2900 2.7815 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.4520 1.2203 1.5893 32 1 3.6996 0.7740 0.0376 33 1 6.1829 0.3527 0.0867 34 1 5.2309 -1.1224 -0.2084 35 1 6.3185 -0.2327 2.5017 36 1 7.0190 -1.5101 1.4796 37 1 3.8004 -3.6408 3.7824 38 1 5.1810 -4.7862 3.7454 39 1 4.0809 -4.0746 6.1344 40 1 5.8649 -4.2096 5.9837 41 1 4.1178 -1.6936 5.8020 42 1 5.6183 -1.9355 6.7482 43 1 9.4094 0.5063 3.3057 44 1 3.0964 -2.0191 3.1134 45 1 4.0594 -0.6002 3.5953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963227893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:13 Heat of formation + Delta-G solvation = -96.883685 kcal Electronic energy + Delta-G solvation = -29520.683580 eV Core-core repulsion = 25403.051801 eV Total energy + Delta-G solvation = -4117.631780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.43665 -47.33261 -40.07413 -38.54800 -36.54061 -33.06165 -32.41559 -31.66086 -30.99521 -29.99042 -27.46017 -25.94895 -24.55670 -23.56955 -22.72254 -20.76108 -20.21044 -19.89291 -19.07745 -17.91690 -17.83270 -16.97236 -16.59132 -16.04419 -15.56259 -14.94224 -14.77439 -14.35580 -14.27218 -13.87138 -13.64856 -13.58660 -13.48133 -13.31264 -13.22376 -12.82966 -12.69805 -12.64207 -12.49530 -12.08621 -12.04060 -11.93530 -11.53593 -11.22707 -11.18100 -10.85210 -10.70863 -10.46231 -10.39423 -10.17594 -10.15878 -9.93521 -9.64494 -9.50246 -9.31178 -8.56292 -8.24022 -6.76173 -6.07902 -3.54088 2.21389 2.70099 3.25908 3.41203 3.46177 3.59306 3.80534 4.26117 4.42753 4.44445 4.94795 5.09260 5.17968 5.20506 5.35209 5.36112 5.41460 5.43973 5.56159 5.61600 5.66043 5.67550 5.79130 5.85578 6.00987 6.12072 6.17989 6.22183 6.27512 6.31759 6.39121 6.43356 6.55007 6.66138 6.69996 6.78807 6.86475 6.86641 6.97773 7.41045 7.57366 7.88873 7.95298 8.27456 8.80173 9.57748 10.22571 11.06412 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.005333 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.656054 B = 5249.393926 C = 6055.955710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.280 3.720 3 F -0.183 7.183 4 F -0.184 7.184 5 C 0.480 3.520 6 O -0.519 6.519 7 N -0.579 5.579 8 C 0.086 3.914 9 C -0.130 4.130 10 C -0.141 4.141 11 C -0.095 4.095 12 H 0.051 0.949 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.132 4.132 16 C -0.136 4.136 17 C 0.126 3.874 18 N -0.602 5.602 19 C -0.248 4.248 20 H 0.082 0.918 21 C 0.049 3.951 22 N -0.901 5.901 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.305 1.305 26 H -0.273 1.273 27 C 0.124 3.876 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -2.360 -6.679 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.240 3.760 3 F -0.164 7.164 4 F -0.165 7.165 5 C 0.262 3.738 6 O -0.396 6.396 7 N -0.309 5.309 8 C -0.036 4.036 9 C -0.168 4.168 10 C -0.178 4.178 11 C -0.116 4.116 12 H 0.070 0.930 13 C 0.045 3.955 14 H 0.056 0.944 15 C -0.170 4.170 16 C -0.174 4.174 17 C 0.002 3.998 18 N -0.329 5.329 19 C -0.376 4.376 20 H 0.099 0.901 21 C -0.153 4.153 22 N -0.542 5.542 23 Si 0.713 3.287 24 H -0.204 1.204 25 H -0.233 1.233 26 H -0.198 1.198 27 C 0.003 3.997 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.131 -2.538 -6.404 13.950 hybrid contribution 0.928 -0.863 -0.627 1.414 sum -11.203 -3.401 -7.030 13.657 Atomic orbital electron populations 1.22583 0.89018 1.06562 1.05435 1.21436 0.95643 0.75646 0.83272 1.92960 1.89531 1.37244 1.96706 1.93075 1.90557 1.80802 1.52079 1.20623 0.83411 0.83635 0.86142 1.90728 1.55189 1.38604 1.55081 1.48332 1.09690 1.41333 1.31556 1.22382 0.91429 0.92008 0.97829 1.21914 0.96107 0.99708 0.99120 1.22219 0.96719 1.01145 0.97710 1.21740 0.94966 0.97233 0.97707 0.93048 1.21228 0.95475 0.89858 0.88985 0.94432 1.22663 0.99946 0.98094 0.96300 1.22754 1.00720 0.98336 0.95621 1.21840 0.94908 0.91117 0.91965 1.44756 1.55297 1.24927 1.07886 1.18390 0.94939 0.86453 1.37797 0.90083 1.25478 0.95496 0.96023 0.98281 1.69769 1.15776 1.25454 1.43167 0.87034 0.77319 0.85761 0.78553 1.20442 1.23330 1.19848 1.21869 0.94994 0.96074 0.86716 0.88759 0.89444 0.88267 0.90012 0.88850 0.90871 0.92964 0.85066 0.92648 0.91193 0.92077 0.91894 0.91846 0.95553 0.93330 0.92493 0.90013 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.82 37.16 0.33 -1.44 16 2 C 0.28 3.68 1.81 -27.89 -0.05 3.63 16 3 F -0.18 -2.40 13.96 2.25 0.03 -2.37 16 4 F -0.18 -2.52 16.90 2.25 0.04 -2.49 16 5 C 0.48 7.76 7.19 -10.99 -0.08 7.68 16 6 O -0.52 -9.31 15.44 5.56 0.09 -9.23 16 7 N -0.58 -9.83 2.98 -172.74 -0.51 -10.35 16 8 C 0.09 1.37 5.82 -3.69 -0.02 1.34 16 9 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 10 C -0.14 -2.87 3.65 -26.69 -0.10 -2.97 16 11 C -0.10 -1.83 2.10 -90.50 -0.19 -2.02 16 12 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 13 C 0.15 3.06 2.11 -66.95 -0.14 2.92 16 14 H 0.04 0.85 3.57 -51.93 -0.19 0.67 16 15 C -0.13 -2.24 6.31 -24.90 -0.16 -2.40 16 16 C -0.14 -2.23 7.08 -24.58 -0.17 -2.40 16 17 C 0.13 2.40 7.25 -2.35 -0.02 2.39 16 18 N -0.60 -13.26 1.51 -162.31 -0.24 -13.51 16 19 C -0.25 -6.31 8.24 -15.06 -0.12 -6.43 16 20 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 21 C 0.05 1.29 3.52 -17.43 -0.06 1.22 16 22 N -0.90 -25.16 13.97 55.49 0.78 -24.39 16 23 Si 0.88 21.55 23.26 -169.99 -3.95 17.59 16 24 H -0.28 -6.54 5.65 56.52 0.32 -6.22 16 25 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.27 -6.72 7.10 56.52 0.40 -6.32 16 27 C 0.12 2.28 5.28 -3.72 -0.02 2.26 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.34 4.62 -51.93 -0.24 1.10 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.13 3.09 4.54 -51.93 -0.24 2.85 16 36 H 0.05 1.21 5.64 -51.93 -0.29 0.92 16 37 H 0.07 1.13 6.22 -51.93 -0.32 0.81 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.08 1.51 5.49 -51.93 -0.28 1.22 16 45 H 0.09 1.93 7.06 -51.93 -0.37 1.56 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -27.87 334.13 -6.35 -34.22 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.63 Total: 4.07 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.97 Total: 1.41 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.02 Total: -48.24 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -3.95 Total: 17.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.87 -6.35 -34.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963227893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.664 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds