Wall clock time and date at job start Tue Mar 31 2020 12:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39908 * 109.47332 * 2 1 4 4 F 1.39903 * 109.47521 * 239.99930 * 2 1 3 5 5 C 1.50699 * 109.47290 * 119.99698 * 2 1 3 6 6 O 1.21289 * 119.99826 * 15.47134 * 5 2 1 7 7 N 1.34771 * 120.00511 * 195.46891 * 5 2 1 8 8 C 1.46925 * 120.63429 * 183.58909 * 7 5 2 9 9 C 1.53191 * 108.77835 * 126.41500 * 8 7 5 10 10 C 1.53037 * 109.31431 * 54.63297 * 9 8 7 11 11 C 1.53043 * 109.53878 * 298.64209 * 10 9 8 12 12 H 1.09001 * 109.51787 * 301.39364 * 11 10 9 13 13 C 1.53002 * 109.49647 * 181.31690 * 11 10 9 14 14 H 1.08995 * 109.99794 * 63.03984 * 13 11 10 15 15 C 1.54327 * 109.87969 * 301.94569 * 13 11 10 16 16 C 1.55161 * 102.93766 * 218.39233 * 15 13 11 17 17 C 1.54905 * 101.58456 * 35.50291 * 16 15 13 18 18 N 1.47017 * 109.88311 * 184.13793 * 13 11 10 19 19 C 1.36937 * 125.64554 * 298.31127 * 18 13 11 20 20 H 1.08000 * 120.00244 * 345.59953 * 19 18 13 21 21 C 1.38817 * 119.99849 * 165.59725 * 19 18 13 22 22 N 1.31614 * 120.00124 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99898 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47375 * 60.00194 * 23 21 19 25 25 H 1.48502 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47113 * 300.00245 * 23 21 19 27 27 C 1.46924 * 120.62954 * 3.61291 * 7 5 2 28 28 H 1.08999 * 109.47604 * 300.00042 * 1 2 3 29 29 H 1.09002 * 109.47128 * 60.00269 * 1 2 3 30 30 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.58970 * 246.20117 * 8 7 5 32 32 H 1.09004 * 109.58833 * 6.62248 * 8 7 5 33 33 H 1.09004 * 109.49759 * 174.59052 * 9 8 7 34 34 H 1.09003 * 109.49401 * 294.64911 * 9 8 7 35 35 H 1.08998 * 109.46396 * 178.61486 * 10 9 8 36 36 H 1.09000 * 109.45553 * 58.65679 * 10 9 8 37 37 H 1.09002 * 110.71862 * 336.75127 * 15 13 11 38 38 H 1.08998 * 110.72011 * 100.02804 * 15 13 11 39 39 H 1.09001 * 111.00069 * 153.57326 * 16 15 13 40 40 H 1.09002 * 111.00355 * 277.42059 * 16 15 13 41 41 H 1.09001 * 110.37110 * 81.82593 * 17 16 15 42 42 H 1.08996 * 110.36366 * 204.04207 * 17 16 15 43 43 H 0.97005 * 119.99977 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58803 * 113.79978 * 27 7 5 45 45 H 1.09000 * 109.70445 * 353.44186 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7103 1.2305 6 8 1.2800 -1.4076 1.8778 7 7 3.3175 -0.5710 1.6117 8 6 3.8422 -1.3182 2.7628 9 6 5.0954 -2.0826 2.3247 10 6 6.0939 -1.1036 1.7028 11 6 5.4693 -0.4513 0.4673 12 1 5.1920 -1.2229 -0.2510 13 6 6.4800 0.5026 -0.1726 14 1 7.3507 -0.0542 -0.5186 15 6 6.9140 1.5718 0.8521 16 6 7.0210 2.8569 -0.0108 17 6 5.8598 2.6542 -1.0159 18 7 5.8564 1.2079 -1.3018 19 6 5.3560 0.6191 -2.4323 20 1 5.6021 -0.4074 -2.6607 21 6 4.5325 1.3416 -3.2848 22 7 4.2330 2.5927 -3.0068 23 14 3.8505 0.5385 -4.8273 24 1 3.0304 -0.6407 -4.4504 25 1 3.0063 1.5148 -5.5618 26 1 4.9732 0.1032 -5.6965 27 6 4.2203 0.3315 0.8843 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0988 -0.6239 3.5629 32 1 3.0889 -2.0228 3.1152 33 1 5.5493 -2.5640 3.1910 34 1 4.8215 -2.8395 1.5898 35 1 6.9967 -1.6410 1.4126 36 1 6.3483 -0.3331 2.4307 37 1 6.1586 1.6907 1.6289 38 1 7.8804 1.3184 1.2880 39 1 6.8618 3.7488 0.5953 40 1 7.9804 2.9027 -0.5261 41 1 4.9129 2.9544 -0.5672 42 1 6.0439 3.2224 -1.9276 43 1 3.6571 3.0974 -3.6023 44 1 4.5077 1.1604 1.5313 45 1 3.7180 0.7176 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963227898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:20 Heat of formation + Delta-G solvation = -104.714527 kcal Electronic energy + Delta-G solvation = -30039.397809 eV Core-core repulsion = 25921.426458 eV Total energy + Delta-G solvation = -4117.971350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.82140 -46.71995 -40.04113 -38.44128 -36.42989 -33.04807 -32.36212 -31.46323 -30.98554 -29.26288 -26.77521 -26.05314 -24.47199 -23.84902 -22.50446 -21.05194 -20.19143 -19.48017 -18.58447 -17.69741 -17.33641 -16.84960 -16.48059 -15.49719 -15.15012 -14.79283 -14.61305 -14.53366 -13.99284 -13.83623 -13.67603 -13.43621 -13.14275 -13.00283 -12.95138 -12.66836 -12.41685 -12.30783 -12.13068 -11.93375 -11.71618 -11.58632 -11.45976 -11.29864 -10.94729 -10.81171 -10.74352 -10.60708 -10.27277 -10.07151 -9.93751 -9.79951 -9.60970 -9.59517 -9.44798 -8.52424 -8.45971 -6.72942 -5.68520 -3.03740 2.30624 2.80905 3.44511 3.48819 3.51135 3.93493 4.17295 4.54038 4.66165 4.81571 4.94513 5.04177 5.12068 5.30315 5.38944 5.53377 5.58102 5.60155 5.63319 5.67757 5.71577 5.77237 5.82343 5.91262 5.93297 5.97458 6.05583 6.15938 6.21024 6.34916 6.36831 6.50605 6.54111 6.60548 6.69302 6.77727 6.95933 7.05931 7.38916 7.58127 7.67098 7.85891 7.93397 8.33652 9.26080 9.87281 10.55153 11.42969 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.008217 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.200055 B = 3406.760992 C = 4935.729435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.282 3.718 3 F -0.172 7.172 4 F -0.172 7.172 5 C 0.488 3.512 6 O -0.527 6.527 7 N -0.588 5.588 8 C 0.109 3.891 9 C -0.132 4.132 10 C -0.117 4.117 11 C -0.106 4.106 12 H 0.072 0.928 13 C 0.168 3.832 14 H 0.036 0.964 15 C -0.128 4.128 16 C -0.151 4.151 17 C 0.173 3.827 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.912 5.912 23 Si 0.898 3.102 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.094 3.906 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.252 0.748 44 H 0.068 0.932 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -4.011 10.932 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.242 3.758 3 F -0.153 7.153 4 F -0.152 7.152 5 C 0.271 3.729 6 O -0.404 6.404 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.171 4.171 10 C -0.155 4.155 11 C -0.128 4.128 12 H 0.090 0.910 13 C 0.060 3.940 14 H 0.054 0.946 15 C -0.166 4.166 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.088 0.912 21 C -0.192 4.192 22 N -0.558 5.558 23 Si 0.729 3.271 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.027 4.027 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.026 -4.268 11.044 11.885 hybrid contribution -0.202 -0.352 -1.002 1.082 sum -1.228 -4.620 10.042 11.122 Atomic orbital electron populations 1.22593 0.89692 1.06056 1.05350 1.21165 0.95029 0.76510 0.83078 1.93061 1.89412 1.36225 1.96579 1.93163 1.90308 1.80486 1.51283 1.20909 0.83018 0.82712 0.86251 1.90688 1.55391 1.39905 1.54414 1.48338 1.09493 1.43313 1.30708 1.21679 0.96421 0.95680 0.87552 1.21909 0.95612 0.98505 1.01025 1.21640 0.97877 0.98171 0.97785 1.21975 0.95931 0.98872 0.96024 0.90988 1.20905 0.93241 0.91848 0.88019 0.94615 1.22665 0.99808 0.96519 0.97618 1.23031 1.01044 0.96064 0.98810 1.21421 0.92468 0.85447 0.95861 1.44492 1.69908 1.01578 1.15702 1.18810 1.22649 0.96610 0.97552 0.91171 1.24776 0.98759 0.96434 0.99266 1.69908 1.39900 1.08071 1.37925 0.86407 0.78946 0.78588 0.83180 1.20795 1.21668 1.21318 1.22559 0.91244 0.90623 0.98274 0.89198 0.89236 0.88683 0.91276 0.89329 0.90983 0.91624 0.91858 0.91849 0.91812 0.92509 0.92599 0.92465 0.95693 0.91194 0.93761 0.91369 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.80 37.15 0.33 -2.22 16 2 C 0.28 5.15 1.79 -27.89 -0.05 5.10 16 3 F -0.17 -3.47 14.12 2.25 0.03 -3.44 16 4 F -0.17 -3.62 16.81 2.25 0.04 -3.59 16 5 C 0.49 8.76 7.19 -10.99 -0.08 8.68 16 6 O -0.53 -9.77 15.42 5.55 0.09 -9.69 16 7 N -0.59 -9.87 2.97 -172.77 -0.51 -10.39 16 8 C 0.11 1.47 6.42 -3.71 -0.02 1.45 16 9 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 10 C -0.12 -1.57 4.87 -26.69 -0.13 -1.70 16 11 C -0.11 -1.86 2.10 -90.50 -0.19 -2.05 16 12 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 13 C 0.17 3.22 2.98 -66.95 -0.20 3.02 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 15 C -0.13 -2.09 5.18 -24.89 -0.13 -2.22 16 16 C -0.15 -2.71 7.08 -24.58 -0.17 -2.89 16 17 C 0.17 3.97 5.41 -2.53 -0.01 3.96 16 18 N -0.59 -14.00 2.34 -162.58 -0.38 -14.38 16 19 C -0.23 -6.04 9.89 -15.06 -0.15 -6.19 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C 0.01 0.14 5.47 -17.43 -0.10 0.04 16 22 N -0.91 -25.73 10.57 55.49 0.59 -25.14 16 23 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.09 1.71 4.67 -3.71 -0.02 1.69 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.27 7.93 -51.93 -0.41 0.85 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.21 7.03 -51.93 -0.36 0.85 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 6.97 -51.93 -0.36 0.43 16 37 H 0.06 0.99 5.44 -51.93 -0.28 0.71 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.07 1.82 6.91 -51.93 -0.36 1.46 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.07 1.20 6.05 -51.93 -0.31 0.89 16 45 H 0.13 2.85 4.21 -51.93 -0.22 2.63 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -29.48 349.29 -7.92 -37.40 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.93 Total: 2.02 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.09 Total: 4.88 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.31 Total: -49.90 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.03 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.48 -7.92 -37.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963227898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.313 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds