Wall clock time and date at job start Tue Mar 31 2020 10:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48505 * 109.47043 * 269.99794 * 3 2 1 5 5 H 1.48497 * 109.47388 * 29.99396 * 3 2 1 6 6 H 1.48498 * 109.47311 * 150.00122 * 3 2 1 7 7 C 1.38819 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99340 * 164.54101 * 7 2 1 9 9 N 1.36929 * 120.00401 * 344.54022 * 7 2 1 10 10 C 1.47604 * 118.64176 * 331.64510 * 9 7 2 11 11 C 1.53956 * 112.14044 * 222.13262 * 10 9 7 12 12 C 1.50880 * 110.09524 * 40.55959 * 11 10 9 13 13 C 1.52564 * 109.36173 * 268.11650 * 12 11 10 14 14 C 1.47088 * 114.32544 * 85.01429 * 13 12 11 15 15 C 1.44577 * 118.64647 * 151.64340 * 9 7 2 16 16 H 1.08994 * 109.43197 * 209.29814 * 15 9 7 17 17 C 1.52998 * 109.44905 * 329.23501 * 15 9 7 18 18 N 1.46500 * 109.47177 * 305.12931 * 17 15 9 19 19 C 1.34775 * 120.00006 * 179.97438 * 18 17 15 20 20 O 1.21274 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99585 * 179.97438 * 19 18 17 22 22 C 1.53783 * 113.61273 * 80.87125 * 21 19 18 23 23 C 1.54046 * 86.98834 * 140.01578 * 22 21 19 24 24 F 1.39895 * 113.62150 * 220.02015 * 23 22 21 25 25 F 1.39900 * 113.68871 * 89.12145 * 23 22 21 26 26 C 1.53781 * 87.07563 * 334.56630 * 23 22 21 27 27 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08992 * 108.94925 * 101.44822 * 10 9 7 29 29 H 1.09002 * 108.95104 * 342.81297 * 10 9 7 30 30 H 1.09008 * 109.36257 * 280.37118 * 11 10 9 31 31 H 1.08998 * 109.36598 * 160.75617 * 11 10 9 32 32 H 1.09003 * 109.48768 * 148.15074 * 12 11 10 33 33 H 1.08993 * 109.49078 * 28.08491 * 12 11 10 34 34 H 1.09003 * 108.51322 * 323.75685 * 13 12 11 35 35 H 1.09003 * 108.38810 * 206.18180 * 13 12 11 36 36 H 1.09004 * 109.33103 * 176.93730 * 14 13 12 37 37 H 1.08996 * 109.19058 * 57.37356 * 14 13 12 38 38 H 1.08996 * 109.47476 * 185.12913 * 17 15 9 39 39 H 1.09006 * 109.47443 * 65.12984 * 17 15 9 40 40 H 0.97008 * 119.99884 * 0.02562 * 18 17 15 41 41 H 1.08996 * 112.85229 * 309.66901 * 21 19 18 42 42 H 1.09001 * 113.61235 * 254.60943 * 22 21 19 43 43 H 1.09001 * 113.61637 * 25.51040 * 22 21 19 44 44 H 1.09002 * 113.61323 * 270.87928 * 26 23 22 45 45 H 1.09001 * 113.61646 * 139.97771 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0609 -1.2192 -0.2488 9 7 1.3627 -2.3665 0.3171 10 6 0.2008 -2.3055 1.2254 11 6 0.2096 -3.4487 2.2565 12 6 1.6121 -3.6789 2.7632 13 6 2.2918 -4.7416 1.9050 14 6 2.9177 -4.2216 0.6797 15 6 1.8453 -3.6048 -0.2520 16 1 1.0146 -4.3020 -0.3606 17 6 2.4614 -3.3285 -1.6249 18 7 1.4838 -2.6367 -2.4686 19 6 1.8081 -2.2893 -3.7297 20 8 2.9091 -2.5499 -4.1663 21 6 0.8021 -1.5781 -4.5977 22 6 0.7136 -0.0670 -4.3265 23 6 0.5896 0.1170 -5.8509 24 9 1.3037 1.2147 -6.3429 25 9 -0.7288 0.0734 -6.3169 26 6 1.3379 -1.2188 -5.9937 27 1 -0.4851 0.8400 -0.0004 28 1 -0.7134 -2.3683 0.6352 29 1 0.2142 -1.3522 1.7538 30 1 -0.1598 -4.3609 1.7879 31 1 -0.4383 -3.1862 3.0928 32 1 1.5736 -4.0175 3.7986 33 1 2.1770 -2.7486 2.7052 34 1 1.5481 -5.4874 1.6242 35 1 3.0595 -5.2293 2.5058 36 1 3.4228 -5.0353 0.1593 37 1 3.6468 -3.4566 0.9467 38 1 2.7427 -4.2716 -2.0934 39 1 3.3465 -2.7033 -1.5069 40 1 0.6032 -2.4280 -2.1192 41 1 -0.1673 -2.0759 -4.6169 42 1 -0.1803 0.2261 -3.7758 43 1 1.6271 0.3559 -3.9085 44 1 2.4219 -1.1103 -6.0308 45 1 0.9478 -1.8551 -6.7881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968806547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:07 Heat of formation + Delta-G solvation = -104.062168 kcal Electronic energy + Delta-G solvation = -28516.873992 eV Core-core repulsion = 24398.930930 eV Total energy + Delta-G solvation = -4117.943062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.70009 -47.03232 -39.68537 -38.28531 -36.54107 -34.49780 -33.51486 -31.76523 -30.74780 -27.54642 -26.12450 -26.08841 -24.98552 -23.51361 -22.19276 -20.70788 -19.92199 -19.34074 -19.15940 -17.84647 -16.66627 -16.30886 -16.18291 -15.91118 -15.61988 -14.97333 -14.77136 -14.58506 -14.16328 -13.89807 -13.77767 -13.60094 -13.43449 -13.31741 -13.00413 -12.81607 -12.46428 -12.13871 -12.00317 -11.73878 -11.56326 -11.43909 -11.25720 -11.14944 -11.11683 -10.87982 -10.65005 -10.31710 -10.25799 -10.07536 -10.02689 -9.74918 -9.63267 -9.59986 -9.26650 -8.48219 -8.26491 -6.75262 -5.88451 -3.32904 3.07968 3.30092 3.39107 3.42384 3.52197 3.76633 3.93547 4.34061 4.41453 4.55864 4.65969 5.15248 5.28830 5.38344 5.39032 5.42593 5.46949 5.53147 5.60772 5.64651 5.74137 5.85656 5.94458 5.97624 6.04205 6.10683 6.24538 6.27109 6.34474 6.52312 6.57730 6.61519 6.66237 6.71664 6.80424 6.94856 7.06340 7.19506 7.35433 7.60642 7.76364 8.24262 8.36791 8.83398 9.14392 9.79017 10.24664 11.18024 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.004842 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.751779 B = 5781.194022 C = 6727.631188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.583 5.583 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.044 0.956 17 C 0.129 3.871 18 N -0.684 5.684 19 C 0.524 3.476 20 O -0.562 6.562 21 C -0.128 4.128 22 C -0.140 4.140 23 C 0.249 3.751 24 F -0.192 7.192 25 F -0.182 7.182 26 C -0.139 4.139 27 H 0.253 0.747 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.413 0.587 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 -5.738 -3.965 7.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.079 0.921 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.062 0.938 17 C 0.004 3.996 18 N -0.332 5.332 19 C 0.309 3.691 20 O -0.442 6.442 21 C -0.149 4.149 22 C -0.178 4.178 23 C 0.213 3.787 24 F -0.172 7.172 25 F -0.162 7.162 26 C -0.177 4.177 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.375 -5.769 -4.254 7.178 hybrid contribution -0.109 1.259 0.236 1.286 sum -0.483 -4.510 -4.018 6.059 Atomic orbital electron populations 1.70019 1.04923 1.25402 1.54142 1.24888 0.95090 0.97789 1.00676 0.86546 0.79455 0.84427 0.77859 1.21385 1.21685 1.20657 1.19005 0.92216 0.84684 1.42028 0.92065 1.43704 1.34390 1.01633 1.50749 1.20989 0.88553 0.95479 0.89379 1.22065 0.96075 1.00471 0.99576 1.20946 0.97078 0.99799 0.96590 1.20288 0.99004 0.97921 0.96633 1.21373 0.99667 0.99747 0.96904 1.20509 0.94027 0.89438 0.89604 0.93766 1.21495 0.92632 0.95135 0.90340 1.45672 1.18634 1.57269 1.11620 1.19823 0.87699 0.79010 0.82577 1.90636 1.23015 1.56401 1.74162 1.22452 1.00483 0.96471 0.95534 1.23993 1.06955 0.94475 0.92383 1.22234 0.76133 0.85570 0.94768 1.92997 1.77306 1.57216 1.89719 1.92999 1.36385 1.96649 1.90210 1.23951 1.03385 0.93032 0.97355 0.93706 0.95743 0.90953 0.93816 0.93283 0.94216 0.90788 0.93533 0.94112 0.93318 0.91836 0.93187 0.91381 0.75075 0.86170 0.87632 0.86534 0.85856 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.35 11.13 55.49 0.62 -21.73 16 2 C 0.01 0.35 4.86 -17.43 -0.08 0.26 16 3 Si 0.89 20.33 29.58 -169.99 -5.03 15.30 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -5.80 7.61 -15.06 -0.11 -5.92 16 8 H 0.06 1.51 6.75 -52.48 -0.35 1.15 16 9 N -0.58 -11.93 1.77 -164.47 -0.29 -12.22 16 10 C 0.18 3.72 4.66 -2.94 -0.01 3.71 16 11 C -0.14 -2.43 5.71 -27.30 -0.16 -2.58 16 12 C -0.11 -1.73 5.51 -28.02 -0.15 -1.89 16 13 C -0.10 -1.52 5.15 -29.79 -0.15 -1.67 16 14 C -0.14 -2.18 5.06 -28.58 -0.14 -2.33 16 15 C 0.17 3.07 2.19 -67.97 -0.15 2.92 16 16 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 17 C 0.13 2.31 4.52 -4.04 -0.02 2.30 16 18 N -0.68 -12.27 4.71 -60.29 -0.28 -12.55 16 19 C 0.52 9.27 7.35 -10.98 -0.08 9.19 16 20 O -0.56 -11.44 15.91 5.56 0.09 -11.35 16 21 C -0.13 -1.85 4.12 -90.95 -0.37 -2.23 16 22 C -0.14 -2.14 7.44 -25.78 -0.19 -2.34 16 23 C 0.25 3.59 3.28 -25.78 -0.08 3.51 16 24 F -0.19 -3.01 17.41 2.25 0.04 -2.97 16 25 F -0.18 -2.65 17.39 2.25 0.04 -2.61 16 26 C -0.14 -1.85 7.18 -25.92 -0.19 -2.04 16 27 H 0.25 6.31 8.31 -40.82 -0.34 5.97 16 28 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 29 H 0.07 1.71 6.47 -51.93 -0.34 1.37 16 30 H 0.04 0.70 7.32 -51.92 -0.38 0.32 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 34 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.37 6.85 -51.93 -0.36 1.02 16 40 H 0.41 7.68 8.07 -40.82 -0.33 7.35 16 41 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.12 1.98 8.09 -51.93 -0.42 1.56 16 44 H 0.12 1.76 7.45 -51.93 -0.39 1.37 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -25.38 357.37 -8.45 -33.82 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.11 Total: 8.02 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.91 Total: 0.89 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.04 Total: -46.50 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.08 Total: -5.58 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -25.38 -8.45 -33.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968806547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.240 kcal (2) G-P(sol) polarization free energy of solvation -25.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds