Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99572 * 2 1 4 4 H 1.48492 * 109.47544 * 274.96708 * 3 2 1 5 5 H 1.48502 * 109.47246 * 34.97108 * 3 2 1 6 6 H 1.48504 * 109.46956 * 154.96466 * 3 2 1 7 7 C 1.38802 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99841 * 194.60727 * 7 2 1 9 9 N 1.36938 * 120.00410 * 14.60787 * 7 2 1 10 10 C 1.47605 * 118.64169 * 27.75277 * 9 7 2 11 11 C 1.53950 * 112.14010 * 137.87331 * 10 9 7 12 12 C 1.50879 * 110.09388 * 319.43250 * 11 10 9 13 13 C 1.52574 * 109.36014 * 91.88972 * 12 11 10 14 14 C 1.47092 * 114.32131 * 274.98935 * 13 12 11 15 15 C 1.44579 * 118.64555 * 207.75649 * 9 7 2 16 16 H 1.08997 * 109.42790 * 150.70114 * 15 9 7 17 17 C 1.53001 * 109.44873 * 30.76239 * 15 9 7 18 18 N 1.46493 * 109.46964 * 54.87082 * 17 15 9 19 19 C 1.34782 * 120.00101 * 179.97438 * 18 17 15 20 20 O 1.21279 * 119.99517 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.00126 * 179.97438 * 19 18 17 22 22 C 1.53779 * 113.61057 * 180.02562 * 21 19 18 23 23 C 1.53781 * 87.08171 * 219.93493 * 22 21 19 24 24 F 1.39899 * 113.61694 * 139.97927 * 23 22 21 25 25 F 1.39896 * 113.61805 * 270.80457 * 23 22 21 26 26 C 1.53781 * 87.16976 * 25.39186 * 23 22 21 27 27 H 0.97001 * 119.99960 * 359.97438 * 1 2 3 28 28 H 1.09000 * 108.94671 * 17.18728 * 10 9 7 29 29 H 1.08995 * 108.94568 * 258.55490 * 10 9 7 30 30 H 1.09001 * 109.36396 * 199.24428 * 11 10 9 31 31 H 1.08995 * 109.26711 * 79.56113 * 11 10 9 32 32 H 1.09003 * 109.49538 * 331.92252 * 12 11 10 33 33 H 1.09000 * 109.50946 * 211.86498 * 12 11 10 34 34 H 1.09000 * 108.51192 * 153.73190 * 13 12 11 35 35 H 1.09000 * 108.38954 * 36.15076 * 13 12 11 36 36 H 1.09004 * 109.32941 * 302.53628 * 14 13 12 37 37 H 1.09010 * 109.32307 * 183.06130 * 14 13 12 38 38 H 1.08996 * 109.47061 * 294.86594 * 17 15 9 39 39 H 1.09005 * 109.46974 * 174.87005 * 17 15 9 40 40 H 0.97000 * 120.00329 * 359.97438 * 18 17 15 41 41 H 1.08994 * 112.84815 * 311.19764 * 21 19 18 42 42 H 1.08997 * 113.61337 * 105.38986 * 22 21 19 43 43 H 1.09001 * 113.69443 * 334.49668 * 22 21 19 44 44 H 1.09008 * 113.61439 * 89.16003 * 26 23 22 45 45 H 1.08997 * 113.61492 * 220.05774 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3927 2.1072 -1.3947 5 1 1.5040 2.6201 0.8025 6 1 3.5963 1.4123 0.5925 7 6 2.0103 -1.2021 -0.0005 8 1 3.0642 -1.2172 0.2354 9 7 1.3589 -2.3687 -0.3001 10 6 0.1773 -2.3127 -1.1829 11 6 0.1664 -3.4585 -2.2111 12 6 1.5579 -3.6866 -2.7478 13 6 2.2589 -4.7456 -1.9021 14 6 2.9101 -4.2209 -0.6920 15 6 1.8569 -3.6045 0.2614 16 1 1.0304 -4.3034 0.3897 17 6 2.5021 -3.3232 1.6199 18 7 1.5414 -2.6316 2.4829 19 6 1.8920 -2.2812 3.7362 20 8 3.0030 -2.5380 4.1493 21 6 0.9039 -1.5692 4.6239 22 6 1.4569 -1.2390 6.0203 23 6 0.0755 -1.6276 6.5730 24 9 0.1337 -2.3508 7.7692 25 9 -0.8272 -0.5603 6.6268 26 6 -0.0901 -2.5121 5.3260 27 1 -0.4850 0.8401 0.0004 28 1 0.1769 -1.3607 -1.7138 29 1 -0.7236 -2.3762 -0.5728 30 1 -0.5003 -3.1996 -3.0337 31 1 -0.1895 -4.3697 -1.7305 32 1 2.1218 -2.7548 -2.7045 33 1 1.4981 -4.0277 -3.7813 34 1 3.0140 -5.2353 -2.5169 35 1 1.5214 -5.4904 -1.6030 36 1 3.6331 -3.4556 -0.9743 37 1 3.4285 -5.0323 -0.1808 38 1 3.3828 -2.6963 1.4809 39 1 2.7959 -4.2646 2.0844 40 1 0.6530 -2.4259 2.1524 41 1 0.4270 -0.7217 4.1317 42 1 1.7005 -0.1852 6.1554 43 1 2.2588 -1.9034 6.3422 44 1 0.2877 -3.5262 5.4566 45 1 -1.0936 -2.4847 4.9014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968806548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -103.820307 kcal Electronic energy + Delta-G solvation = -28257.652937 eV Core-core repulsion = 24139.720363 eV Total energy + Delta-G solvation = -4117.932574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.80792 -47.13904 -39.71675 -38.29965 -36.60320 -34.50137 -33.52116 -31.76903 -30.73432 -27.55775 -26.25793 -26.12854 -25.00988 -23.51077 -22.21423 -20.75702 -19.93295 -19.35509 -19.18254 -17.91603 -16.77614 -16.31696 -16.30347 -15.98575 -15.60691 -14.97309 -14.87948 -14.51960 -14.16535 -14.01285 -13.84168 -13.60082 -13.49157 -13.38491 -13.02445 -12.79798 -12.61272 -12.15499 -12.01914 -11.80260 -11.61608 -11.42903 -11.30244 -11.19781 -11.09890 -10.89904 -10.63086 -10.45800 -10.23594 -10.06813 -10.02589 -9.74650 -9.63091 -9.59766 -9.28454 -8.47405 -8.27505 -6.76090 -5.87490 -3.32328 3.03686 3.31700 3.40362 3.42561 3.43061 3.72340 3.82906 4.25542 4.42209 4.44293 4.55326 5.15377 5.29349 5.35443 5.38289 5.42619 5.46068 5.46481 5.50982 5.59741 5.61080 5.73463 5.85807 5.97420 6.03658 6.10482 6.16511 6.26477 6.34549 6.52574 6.57732 6.61500 6.66465 6.71767 6.80943 6.94932 7.06356 7.18660 7.36803 7.62640 7.77225 8.23078 8.37283 8.82227 9.15114 9.79535 10.24465 11.18938 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004498 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.449596 B = 6223.707842 C = 7166.563629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.891 3.109 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.128 3.872 18 N -0.684 5.684 19 C 0.525 3.475 20 O -0.561 6.561 21 C -0.130 4.130 22 C -0.141 4.141 23 C 0.253 3.747 24 F -0.192 7.192 25 F -0.179 7.179 26 C -0.147 4.147 27 H 0.253 0.747 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 -6.753 4.546 8.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.004 3.996 18 N -0.332 5.332 19 C 0.310 3.690 20 O -0.442 6.442 21 C -0.151 4.151 22 C -0.179 4.179 23 C 0.217 3.783 24 F -0.173 7.173 25 F -0.160 7.160 26 C -0.186 4.186 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.249 0.751 41 H 0.146 0.854 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.132 0.868 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.592 -6.800 4.842 8.369 hybrid contribution -0.127 1.234 -0.216 1.260 sum -0.719 -5.565 4.626 7.273 Atomic orbital electron populations 1.70027 1.04935 1.25376 1.54390 1.24916 0.95175 0.97918 1.00713 0.86436 0.79456 0.84342 0.77577 1.21615 1.21836 1.20497 1.19060 0.92045 0.84541 1.42175 0.91909 1.43731 1.32632 1.01671 1.52535 1.21013 0.88125 0.95561 0.89750 1.22069 0.96119 1.00487 0.99536 1.20948 0.97060 0.99816 0.96598 1.20289 0.98912 0.97929 0.96710 1.21373 0.99561 0.99749 0.97010 1.20509 0.93949 0.89456 0.89664 0.93749 1.21501 0.92893 0.95152 0.90085 1.45669 1.18218 1.57409 1.11889 1.19793 0.87616 0.79121 0.82517 1.90639 1.22017 1.56582 1.74912 1.22550 0.97059 1.00306 0.95187 1.23962 0.95116 1.05376 0.93452 1.22082 0.91398 0.83099 0.81761 1.92998 1.96752 1.77556 1.49999 1.93022 1.69469 1.56813 1.96679 1.24016 1.02114 0.99811 0.92625 0.93719 0.90732 0.95795 0.93260 0.93831 0.90798 0.94209 0.94087 0.93537 0.91837 0.93331 0.91344 0.93184 0.75094 0.85368 0.88569 0.85819 0.86793 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.85 11.03 55.49 0.61 -22.24 16 2 C 0.01 0.28 4.89 -17.43 -0.09 0.20 16 3 Si 0.89 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.25 -5.85 7.64 -15.06 -0.12 -5.96 16 8 H 0.06 1.56 6.72 -52.48 -0.35 1.21 16 9 N -0.58 -12.05 1.77 -164.47 -0.29 -12.34 16 10 C 0.18 3.74 4.66 -2.94 -0.01 3.73 16 11 C -0.14 -2.44 5.71 -27.30 -0.16 -2.60 16 12 C -0.11 -1.74 5.51 -28.01 -0.15 -1.90 16 13 C -0.10 -1.52 5.16 -29.78 -0.15 -1.67 16 14 C -0.14 -2.19 5.06 -28.58 -0.14 -2.33 16 15 C 0.17 3.07 2.19 -67.97 -0.15 2.92 16 16 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 17 C 0.13 2.31 4.52 -4.04 -0.02 2.29 16 18 N -0.68 -12.25 4.71 -60.30 -0.28 -12.54 16 19 C 0.52 9.25 7.37 -10.98 -0.08 9.17 16 20 O -0.56 -11.40 15.90 5.56 0.09 -11.31 16 21 C -0.13 -1.86 4.12 -90.87 -0.37 -2.24 16 22 C -0.14 -1.86 7.19 -25.92 -0.19 -2.04 16 23 C 0.25 3.26 3.27 -25.92 -0.08 3.18 16 24 F -0.19 -2.61 17.41 2.25 0.04 -2.57 16 25 F -0.18 -2.50 17.38 2.25 0.04 -2.46 16 26 C -0.15 -1.77 7.43 -25.83 -0.19 -1.96 16 27 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.07 1.78 6.39 -51.93 -0.33 1.45 16 29 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.70 7.31 -51.93 -0.38 0.33 16 32 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.69 8.11 -51.92 -0.42 0.27 16 38 H 0.07 1.39 6.83 -51.93 -0.35 1.04 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.41 7.66 8.07 -40.82 -0.33 7.34 16 41 H 0.13 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.12 1.67 7.44 -51.93 -0.39 1.29 16 44 H 0.11 1.28 8.10 -51.92 -0.42 0.86 16 45 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -25.99 357.17 -8.45 -34.44 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.10 Total: 7.25 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.91 Total: 0.78 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.04 Total: -47.12 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.08 Total: -5.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -25.99 -8.45 -34.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968806548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.377 kcal (2) G-P(sol) polarization free energy of solvation -25.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds