Wall clock time and date at job start Tue Mar 31 2020 10:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48499 * 109.46682 * 239.99314 * 3 2 1 5 5 H 1.48498 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47166 * 119.99246 * 3 2 1 7 7 C 1.38812 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99215 * 164.78685 * 7 2 1 9 9 N 1.36932 * 120.00356 * 344.77946 * 7 2 1 10 10 C 1.47624 * 118.66699 * 331.08933 * 9 7 2 11 11 C 1.53944 * 112.13509 * 222.14660 * 10 9 7 12 12 C 1.50882 * 110.09626 * 40.54081 * 11 10 9 13 13 C 1.52574 * 109.35887 * 268.11614 * 12 11 10 14 14 C 1.47090 * 114.32389 * 85.01231 * 13 12 11 15 15 C 1.44576 * 118.64081 * 151.05772 * 9 7 2 16 16 H 1.09004 * 109.45185 * 209.29109 * 15 9 7 17 17 C 1.53006 * 109.45221 * 329.23886 * 15 9 7 18 18 N 1.46500 * 109.46538 * 305.04988 * 17 15 9 19 19 C 1.34782 * 119.99462 * 179.97438 * 18 17 15 20 20 O 1.21277 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99654 * 180.02562 * 19 18 17 22 22 H 1.09000 * 112.91119 * 311.25068 * 21 19 18 23 23 C 1.53788 * 113.61096 * 180.02562 * 21 19 18 24 24 C 1.53779 * 87.17023 * 220.06122 * 23 21 19 25 25 C 1.53779 * 87.08277 * 25.39143 * 24 23 21 26 26 F 1.39899 * 113.61531 * 89.11752 * 25 24 23 27 27 F 1.39902 * 113.61372 * 220.01894 * 25 24 23 28 28 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 29 29 H 1.09003 * 108.97010 * 101.44614 * 10 9 7 30 30 H 1.09004 * 108.86318 * 342.77088 * 10 9 7 31 31 H 1.09007 * 109.36634 * 280.34901 * 11 10 9 32 32 H 1.09000 * 109.36905 * 160.73236 * 11 10 9 33 33 H 1.08998 * 109.48913 * 148.15112 * 12 11 10 34 34 H 1.09000 * 109.50436 * 28.09053 * 12 11 10 35 35 H 1.09003 * 108.50984 * 323.75714 * 13 12 11 36 36 H 1.08995 * 108.50981 * 206.26646 * 13 12 11 37 37 H 1.09004 * 109.32464 * 176.93899 * 14 13 12 38 38 H 1.08998 * 109.19003 * 57.37040 * 14 13 12 39 39 H 1.09000 * 109.47147 * 185.05300 * 17 15 9 40 40 H 1.08994 * 109.47011 * 65.05295 * 17 15 9 41 41 H 0.96993 * 120.00404 * 0.02562 * 18 17 15 42 42 H 1.08996 * 113.61320 * 105.47431 * 23 21 19 43 43 H 1.09000 * 113.61304 * 334.64957 * 23 21 19 44 44 H 1.09005 * 113.61617 * 139.93963 * 24 23 21 45 45 H 1.09003 * 113.61867 * 270.84003 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0619 -1.2186 -0.2449 9 7 1.3616 -2.3671 0.3124 10 6 0.2038 -2.3102 1.2264 11 6 0.2155 -3.4603 2.2497 12 6 1.6199 -3.6967 2.7479 13 6 2.2933 -4.7548 1.8792 14 6 2.9142 -4.2277 0.6543 15 6 1.8385 -3.6025 -0.2678 16 1 1.0058 -4.2974 -0.3771 17 6 2.4484 -3.3181 -1.6419 18 7 1.4674 -2.6198 -2.4764 19 6 1.7861 -2.2647 -3.7369 20 8 2.8848 -2.5236 -4.1804 21 6 0.7773 -1.5459 -4.5951 22 1 -0.2014 -2.0257 -4.5916 23 6 1.2941 -1.2119 -6.0045 24 6 0.5752 0.1403 -5.8649 25 6 0.7214 -0.0281 -4.3433 26 9 1.9131 0.4979 -3.8332 27 9 -0.4064 0.3805 -3.6234 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7135 -2.3671 0.6404 30 1 0.2233 -1.3605 1.7612 31 1 -0.1580 -4.3687 1.7768 32 1 -0.4278 -3.2023 3.0909 33 1 1.5859 -4.0423 3.7811 34 1 2.1866 -2.7672 2.6937 35 1 1.5467 -5.4972 1.5969 36 1 3.0625 -5.2505 2.4714 37 1 3.4151 -5.0389 0.1259 38 1 3.6461 -3.4659 0.9229 39 1 2.7263 -4.2585 -2.1178 40 1 3.3346 -2.6947 -1.5240 41 1 0.5888 -2.4124 -2.1215 42 1 0.8777 -1.8492 -6.7846 43 1 2.3791 -1.1257 -6.0626 44 1 1.1420 0.9798 -6.2677 45 1 -0.4590 0.1227 -6.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968914694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:15 Heat of formation + Delta-G solvation = -98.517536 kcal Electronic energy + Delta-G solvation = -29356.916244 eV Core-core repulsion = 25239.213615 eV Total energy + Delta-G solvation = -4117.702629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.34098 -46.66420 -39.49116 -38.20355 -36.64195 -34.43141 -33.41517 -31.72730 -30.64857 -27.87682 -26.37187 -25.30943 -24.70828 -23.42141 -22.20390 -20.54506 -19.85228 -19.35307 -19.10925 -17.59665 -17.13798 -16.15138 -15.96592 -15.74905 -15.46258 -14.98327 -14.62238 -14.14584 -13.98750 -13.69566 -13.54018 -13.45202 -13.33768 -13.05634 -12.90037 -12.72021 -12.58651 -12.05125 -11.92880 -11.59658 -11.44157 -11.29638 -11.18166 -11.02397 -11.00611 -10.72783 -10.57221 -10.47418 -10.17348 -10.00567 -9.96646 -9.65750 -9.56675 -9.51973 -9.19153 -8.35568 -8.20166 -6.63212 -5.76213 -3.20974 2.97639 3.44711 3.48854 3.53647 3.68199 3.84839 4.12955 4.48360 4.54998 4.56632 4.68532 5.22959 5.35317 5.37872 5.41372 5.47926 5.52108 5.56692 5.66288 5.66847 5.71769 5.80332 5.91570 6.03292 6.10069 6.16174 6.26200 6.31827 6.39335 6.58316 6.64062 6.66730 6.71901 6.77486 6.86054 7.01216 7.12149 7.24919 7.42642 7.68181 7.88972 8.27901 8.49108 8.86747 9.26723 9.90539 10.36098 11.30649 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.006123 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.781360 B = 4571.768345 C = 5580.295800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.060 0.940 9 N -0.582 5.582 10 C 0.181 3.819 11 C -0.142 4.142 12 C -0.106 4.106 13 C -0.100 4.100 14 C -0.136 4.136 15 C 0.174 3.826 16 H 0.043 0.957 17 C 0.129 3.871 18 N -0.682 5.682 19 C 0.521 3.479 20 O -0.555 6.555 21 C -0.165 4.165 22 H 0.133 0.867 23 C -0.111 4.111 24 C -0.169 4.169 25 C 0.278 3.722 26 F -0.167 7.167 27 F -0.178 7.178 28 H 0.253 0.747 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -5.401 -6.476 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.304 5.304 10 C 0.056 3.944 11 C -0.181 4.181 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.065 3.935 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.330 5.330 19 C 0.305 3.695 20 O -0.435 6.435 21 C -0.188 4.188 22 H 0.151 0.849 23 C -0.149 4.149 24 C -0.207 4.207 25 C 0.241 3.759 26 F -0.148 7.148 27 F -0.158 7.158 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.212 -5.428 -6.713 8.718 hybrid contribution -0.006 1.228 0.580 1.358 sum -1.217 -4.201 -6.133 7.533 Atomic orbital electron populations 1.69984 1.04900 1.25536 1.53458 1.24861 0.95057 0.97761 1.00097 0.86631 0.79385 0.84321 0.78211 1.20482 1.21769 1.21328 1.18894 0.92074 0.84578 1.43090 0.92236 1.43681 1.34767 1.01775 1.50179 1.20986 0.88690 0.95318 0.89360 1.22065 0.96031 1.00477 0.99574 1.20944 0.97122 0.99817 0.96505 1.20282 0.98985 0.97878 0.96619 1.21379 0.99734 0.99686 0.96914 1.20500 0.93991 0.89518 0.89519 0.93879 1.21497 0.92616 0.94910 0.90499 1.45676 1.18747 1.56822 1.11744 1.19729 0.87701 0.79375 0.82673 1.90623 1.22825 1.56316 1.73691 1.24033 1.02286 0.94745 0.97698 0.84920 1.22698 1.02489 0.95319 0.94397 1.24098 1.03878 1.00366 0.92330 1.21769 0.73066 0.91821 0.89243 1.93089 1.45394 1.87583 1.88729 1.93086 1.50261 1.91665 1.80816 0.93666 0.95780 0.91027 0.93862 0.93321 0.94258 0.90758 0.93593 0.94156 0.93374 0.91824 0.93217 0.91353 0.75122 0.89199 0.87609 0.88747 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 11.16 55.49 0.62 -23.35 16 2 C 0.02 0.58 4.86 -17.43 -0.08 0.49 16 3 Si 0.88 22.14 29.58 -169.99 -5.03 17.11 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.26 -6.43 7.60 -15.06 -0.11 -6.55 16 8 H 0.06 1.58 6.77 -52.48 -0.36 1.22 16 9 N -0.58 -12.73 1.77 -164.44 -0.29 -13.02 16 10 C 0.18 3.94 4.67 -2.93 -0.01 3.92 16 11 C -0.14 -2.54 5.71 -27.30 -0.16 -2.69 16 12 C -0.11 -1.81 5.51 -28.01 -0.15 -1.97 16 13 C -0.10 -1.58 5.15 -29.79 -0.15 -1.73 16 14 C -0.14 -2.31 5.06 -28.58 -0.14 -2.45 16 15 C 0.17 3.28 2.19 -67.97 -0.15 3.13 16 16 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 17 C 0.13 2.51 4.53 -4.04 -0.02 2.49 16 18 N -0.68 -13.48 4.72 -60.29 -0.28 -13.76 16 19 C 0.52 10.09 6.80 -10.98 -0.07 10.01 16 20 O -0.55 -12.06 15.90 5.56 0.09 -11.97 16 21 C -0.17 -2.57 4.05 -90.87 -0.37 -2.94 16 22 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 23 C -0.11 -1.40 7.38 -25.92 -0.19 -1.59 16 24 C -0.17 -2.03 7.87 -25.92 -0.20 -2.23 16 25 C 0.28 4.84 3.10 -25.83 -0.08 4.76 16 26 F -0.17 -3.59 16.69 2.25 0.04 -3.55 16 27 F -0.18 -3.48 17.41 2.25 0.04 -3.44 16 28 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.02 0.56 8.01 -51.93 -0.42 0.15 16 30 H 0.07 1.77 6.50 -51.93 -0.34 1.44 16 31 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.47 7.48 -51.93 -0.39 1.08 16 35 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.73 8.11 -51.93 -0.42 0.30 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.49 6.86 -51.93 -0.36 1.14 16 41 H 0.41 8.53 8.08 -40.82 -0.33 8.20 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.11 1.52 7.43 -51.93 -0.39 1.13 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -28.88 356.60 -8.46 -37.34 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.11 Total: 6.60 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.91 Total: 2.66 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.04 Total: -50.13 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.08 Total: -6.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.88 -8.46 -37.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968914694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.177 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds