Wall clock time and date at job start Tue Mar 31 2020 10:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47465 * 270.00183 * 3 2 1 5 5 H 1.48507 * 109.47095 * 29.99951 * 3 2 1 6 6 H 1.48499 * 109.47514 * 150.00090 * 3 2 1 7 7 C 1.38809 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99683 * 164.88749 * 7 2 1 9 9 N 1.36928 * 120.00361 * 344.89025 * 7 2 1 10 10 C 1.47610 * 118.64469 * 331.38982 * 9 7 2 11 11 C 1.53939 * 112.14365 * 222.13250 * 10 9 7 12 12 C 1.50883 * 110.09916 * 40.56425 * 11 10 9 13 13 C 1.52563 * 109.36331 * 268.11377 * 12 11 10 14 14 C 1.47100 * 114.20480 * 85.08374 * 13 12 11 15 15 C 1.44580 * 118.64664 * 151.37569 * 9 7 2 16 16 H 1.09003 * 109.45273 * 209.28497 * 15 9 7 17 17 C 1.53004 * 109.44737 * 329.22969 * 15 9 7 18 18 N 1.46499 * 109.46997 * 305.00145 * 17 15 9 19 19 C 1.34775 * 119.99946 * 179.97438 * 18 17 15 20 20 O 1.21286 * 120.00174 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00078 * 180.02562 * 19 18 17 22 22 H 1.09000 * 112.85032 * 48.80145 * 21 19 18 23 23 C 1.53785 * 113.61493 * 179.97438 * 21 19 18 24 24 C 1.53784 * 87.08116 * 139.97824 * 23 21 19 25 25 C 1.53781 * 87.07943 * 334.56659 * 24 23 21 26 26 F 1.39903 * 113.61696 * 270.88121 * 25 24 23 27 27 F 1.39906 * 113.61070 * 139.98301 * 25 24 23 28 28 H 0.97000 * 120.00309 * 359.97438 * 1 2 3 29 29 H 1.09000 * 108.94545 * 101.44697 * 10 9 7 30 30 H 1.08997 * 108.94468 * 342.82024 * 10 9 7 31 31 H 1.08999 * 109.37032 * 280.36938 * 11 10 9 32 32 H 1.09009 * 109.26270 * 160.69214 * 11 10 9 33 33 H 1.09004 * 109.49014 * 148.14713 * 12 11 10 34 34 H 1.09002 * 109.48795 * 28.08453 * 12 11 10 35 35 H 1.08995 * 108.51701 * 206.25832 * 13 12 11 36 36 H 1.08997 * 108.51444 * 323.91363 * 13 12 11 37 37 H 1.09002 * 109.32350 * 57.38410 * 14 13 12 38 38 H 1.08999 * 109.32580 * 176.85896 * 14 13 12 39 39 H 1.08999 * 109.46828 * 64.99604 * 17 15 9 40 40 H 1.09002 * 109.47324 * 185.00335 * 17 15 9 41 41 H 0.97001 * 120.00061 * 359.97438 * 18 17 15 42 42 H 1.08994 * 113.61439 * 254.52713 * 23 21 19 43 43 H 1.09000 * 113.61672 * 25.42811 * 23 21 19 44 44 H 1.08999 * 113.61614 * 89.11505 * 24 23 21 45 45 H 1.09001 * 113.61192 * 219.93222 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0622 -1.2183 -0.2444 9 7 1.3610 -2.3676 0.3080 10 6 0.1977 -2.3109 1.2149 11 6 0.2038 -3.4602 2.2390 12 6 1.6052 -3.6951 2.7466 13 6 2.2852 -4.7532 1.8832 14 6 2.9142 -4.2234 0.6635 15 6 1.8431 -3.6030 -0.2681 16 1 1.0119 -4.2990 -0.3820 17 6 2.4611 -3.3189 -1.6386 18 7 1.4842 -2.6236 -2.4802 19 6 1.8103 -2.2692 -3.7390 20 8 2.9126 -2.5256 -4.1749 21 6 0.8055 -1.5535 -4.6045 22 1 0.3391 -0.7071 -4.1002 23 6 1.3310 -1.2190 -6.0105 24 6 -0.0607 -1.6068 -6.5374 25 6 -0.1989 -2.4951 -5.2897 26 9 0.2852 -3.7951 -5.4707 27 9 -1.4757 -2.4641 -4.7184 28 1 -0.4850 0.8400 0.0004 29 1 -0.7156 -2.3692 0.6229 30 1 0.2114 -1.3609 1.7490 31 1 -0.1658 -4.3693 1.7645 32 1 -0.4448 -3.1999 3.0756 33 1 1.5647 -4.0398 3.7799 34 1 2.1712 -2.7649 2.6951 35 1 3.0510 -5.2477 2.4807 36 1 1.5407 -5.4950 1.5943 37 1 3.6439 -3.4609 0.9361 38 1 3.4211 -5.0328 0.1383 39 1 3.3453 -2.6934 -1.5157 40 1 2.7441 -4.2593 -2.1116 41 1 0.6026 -2.4182 -2.1314 42 1 1.5715 -0.1647 -6.1474 43 1 2.1266 -1.8829 -6.3488 44 1 -0.7655 -0.7757 -6.5619 45 1 -0.0333 -2.1663 -7.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968914697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:26 Heat of formation + Delta-G solvation = -101.021048 kcal Electronic energy + Delta-G solvation = -28830.569463 eV Core-core repulsion = 24712.758273 eV Total energy + Delta-G solvation = -4117.811189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.72366 -47.04365 -39.53758 -38.24492 -36.72018 -34.45569 -33.47540 -31.74664 -30.71448 -27.92199 -26.42858 -25.35598 -24.87720 -23.48088 -22.24512 -20.62371 -19.90474 -19.43289 -19.17085 -17.78456 -17.31910 -16.30780 -16.12615 -15.87243 -15.55285 -15.02073 -14.67621 -14.23349 -14.02530 -13.93674 -13.65063 -13.61697 -13.56190 -13.30192 -13.05909 -12.81428 -12.58486 -12.11608 -11.95315 -11.66557 -11.50069 -11.32690 -11.23110 -11.15427 -11.09350 -10.86089 -10.66266 -10.61403 -10.22642 -10.03847 -9.99021 -9.71003 -9.59286 -9.56258 -9.22202 -8.45099 -8.22115 -6.70774 -5.84588 -3.29621 2.91159 3.32204 3.40237 3.43644 3.55001 3.77230 3.92855 4.32442 4.42586 4.44509 4.57063 5.19551 5.31155 5.36517 5.40425 5.43710 5.47387 5.50613 5.52658 5.59882 5.64470 5.81398 5.89742 6.01594 6.08521 6.14910 6.20332 6.31294 6.38133 6.56498 6.61251 6.65384 6.70386 6.75400 6.84299 6.99141 7.09958 7.22924 7.39699 7.65050 7.79619 8.26038 8.40697 8.84899 9.18026 9.82652 10.28670 11.21911 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.005432 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.309855 B = 5153.872182 C = 6084.764879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.011 3.989 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.062 0.938 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.129 3.871 18 N -0.682 5.682 19 C 0.522 3.478 20 O -0.554 6.554 21 C -0.163 4.163 22 H 0.142 0.858 23 C -0.112 4.112 24 C -0.163 4.163 25 C 0.270 3.730 26 F -0.174 7.174 27 F -0.186 7.186 28 H 0.253 0.747 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.413 0.587 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -4.885 -6.276 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.330 5.330 19 C 0.306 3.694 20 O -0.434 6.434 21 C -0.185 4.185 22 H 0.160 0.840 23 C -0.150 4.150 24 C -0.201 4.201 25 C 0.233 3.767 26 F -0.155 7.155 27 F -0.167 7.167 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.249 0.751 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.801 -4.984 -6.522 8.247 hybrid contribution -0.139 0.950 0.481 1.074 sum -0.940 -4.034 -6.042 7.325 Atomic orbital electron populations 1.70033 1.04950 1.25379 1.54223 1.24939 0.95144 0.97930 1.00728 0.86473 0.79365 0.84296 0.77693 1.21542 1.21710 1.20636 1.19018 0.92124 0.84622 1.42128 0.92022 1.43713 1.34278 1.01776 1.50750 1.20993 0.88559 0.95393 0.89486 1.22063 0.96086 1.00485 0.99554 1.20946 0.97084 0.99792 0.96554 1.20290 0.99001 0.97919 0.96633 1.21377 0.99596 0.99731 0.96920 1.20537 0.94065 0.89503 0.89540 0.93729 1.21503 0.92552 0.95121 0.90356 1.45675 1.18524 1.57075 1.11756 1.19707 0.87764 0.79410 0.82538 1.90627 1.22656 1.56292 1.73807 1.24047 0.96534 0.99808 0.98138 0.84011 1.22719 0.96302 1.04139 0.91843 1.24052 0.99498 0.99634 0.96959 1.21990 0.78642 0.80039 0.96060 1.93038 1.87495 1.39287 1.95695 1.93046 1.40954 1.96471 1.86189 0.93727 0.95740 0.90948 0.93782 0.93260 0.94216 0.90786 0.94081 0.93510 0.91810 0.93352 0.91288 0.93163 0.75097 0.88912 0.87560 0.86860 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.32 11.13 55.49 0.62 -22.71 16 2 C 0.01 0.28 4.87 -17.43 -0.08 0.20 16 3 Si 0.89 20.79 29.58 -169.99 -5.03 15.76 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.04 7.61 -15.06 -0.11 -6.15 16 8 H 0.06 1.57 6.76 -52.48 -0.35 1.21 16 9 N -0.58 -12.58 1.77 -164.43 -0.29 -12.87 16 10 C 0.18 3.89 4.66 -2.94 -0.01 3.88 16 11 C -0.14 -2.54 5.71 -27.30 -0.16 -2.69 16 12 C -0.11 -1.79 5.50 -28.02 -0.15 -1.95 16 13 C -0.10 -1.59 5.16 -29.79 -0.15 -1.74 16 14 C -0.14 -2.29 5.06 -28.55 -0.14 -2.43 16 15 C 0.17 3.26 2.20 -67.94 -0.15 3.11 16 16 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 17 C 0.13 2.51 4.53 -4.04 -0.02 2.49 16 18 N -0.68 -13.52 4.72 -60.29 -0.28 -13.81 16 19 C 0.52 10.11 6.80 -10.99 -0.07 10.04 16 20 O -0.55 -12.01 15.90 5.55 0.09 -11.92 16 21 C -0.16 -2.55 4.04 -90.96 -0.37 -2.91 16 22 H 0.14 2.17 8.14 -51.93 -0.42 1.75 16 23 C -0.11 -1.41 7.38 -25.91 -0.19 -1.60 16 24 C -0.16 -1.74 7.87 -25.92 -0.20 -1.94 16 25 C 0.27 3.93 3.10 -25.92 -0.08 3.85 16 26 F -0.17 -2.85 16.69 2.25 0.04 -2.81 16 27 F -0.19 -2.92 17.41 2.25 0.04 -2.88 16 28 H 0.25 6.51 8.31 -40.82 -0.34 6.18 16 29 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 30 H 0.07 1.77 6.48 -51.93 -0.34 1.43 16 31 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 32 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.44 7.48 -51.93 -0.39 1.05 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.07 1.47 6.85 -51.93 -0.36 1.11 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.41 8.58 8.08 -40.82 -0.33 8.25 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.11 1.45 7.43 -51.93 -0.39 1.07 16 44 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -27.19 356.51 -8.46 -35.65 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.11 Total: 8.07 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.91 Total: 2.14 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.04 Total: -49.39 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.08 Total: -5.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.19 -8.46 -35.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968914697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.373 kcal (2) G-P(sol) polarization free energy of solvation -27.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds