Wall clock time and date at job start Tue Mar 31 2020 11:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46609 * 2 1 4 4 O 1.21286 * 119.99587 * 237.40611 * 3 2 1 5 5 N 1.34772 * 120.00530 * 57.40995 * 3 2 1 6 6 C 1.47020 * 125.64625 * 354.21940 * 5 3 2 7 7 C 1.54330 * 107.40044 * 181.10124 * 6 5 3 8 8 C 1.55156 * 102.94218 * 22.11192 * 7 6 5 9 9 H 1.08993 * 111.00641 * 82.57296 * 8 7 6 10 10 N 1.46502 * 111.00005 * 206.38611 * 8 7 6 11 11 C 1.36931 * 119.99972 * 273.54186 * 10 8 7 12 12 H 1.07993 * 120.00274 * 0.02562 * 11 10 8 13 13 C 1.38816 * 119.99766 * 179.97438 * 11 10 8 14 14 N 1.31616 * 120.00160 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46977 * 90.00268 * 15 13 11 17 17 H 1.48498 * 109.47362 * 210.00470 * 15 13 11 18 18 H 1.48498 * 109.47094 * 330.00676 * 15 13 11 19 19 C 1.47741 * 125.82532 * 174.11762 * 5 3 2 20 20 C 1.53004 * 109.47262 * 119.99764 * 2 1 3 21 21 C 1.52998 * 109.47038 * 180.02562 * 20 2 1 22 22 C 1.52996 * 109.46863 * 299.99668 * 21 20 2 23 23 F 1.39903 * 109.47532 * 300.00139 * 22 21 20 24 24 F 1.39902 * 109.47008 * 179.97438 * 22 21 20 25 25 C 1.53004 * 109.47023 * 60.00322 * 22 21 20 26 26 C 1.52996 * 109.46974 * 239.99637 * 2 1 3 27 27 H 1.08989 * 109.47619 * 45.02027 * 1 2 3 28 28 H 1.09008 * 109.47148 * 165.02151 * 1 2 3 29 29 H 1.09005 * 109.47254 * 285.01579 * 1 2 3 30 30 H 1.09000 * 109.88833 * 61.60391 * 6 5 3 31 31 H 1.09005 * 109.88044 * 300.59106 * 6 5 3 32 32 H 1.08998 * 110.71590 * 140.47550 * 7 6 5 33 33 H 1.08997 * 110.71796 * 263.74247 * 7 6 5 34 34 H 0.97005 * 119.99863 * 93.55088 * 10 8 7 35 35 H 0.97006 * 120.00151 * 179.97438 * 14 13 11 36 36 H 1.09002 * 110.29239 * 37.02802 * 19 5 3 37 37 H 1.08999 * 110.53228 * 274.76082 * 19 5 3 38 38 H 1.09001 * 109.46735 * 300.00112 * 20 2 1 39 39 H 1.08998 * 109.46794 * 59.99665 * 20 2 1 40 40 H 1.09000 * 109.46844 * 179.97438 * 21 20 2 41 41 H 1.08997 * 109.46946 * 60.00271 * 21 20 2 42 42 H 1.09001 * 109.46735 * 179.97438 * 25 22 21 43 43 H 1.09005 * 109.47054 * 59.99896 * 25 22 21 44 44 H 1.08998 * 109.47316 * 299.99624 * 26 2 1 45 45 H 1.09000 * 109.47179 * 60.00121 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.7678 1.8040 -0.8850 5 7 1.6641 2.2658 0.9833 6 6 0.6896 1.9729 2.0445 7 6 0.5679 3.2372 2.9211 8 6 1.0588 4.3647 1.9749 9 1 0.2581 4.6963 1.3139 10 7 1.6057 5.4894 2.7379 11 6 0.7736 6.4771 3.1930 12 1 -0.2858 6.4268 2.9898 13 6 1.2918 7.5425 3.9164 14 7 2.5829 7.6036 4.1645 15 14 0.1566 8.8896 4.5378 16 1 -0.3390 8.5338 5.8917 17 1 0.9011 10.1728 4.6045 18 1 -0.9949 9.0331 3.6112 19 6 2.1720 3.6394 1.1783 20 6 2.0401 -0.7212 1.2493 21 6 3.5700 -0.7206 1.2496 22 6 4.0805 -1.4416 0.0004 23 9 3.6146 -2.7608 0.0002 24 9 5.4795 -1.4406 0.0003 25 6 3.5704 -0.7204 -1.2489 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.7263 -0.7268 28 1 -0.3634 -0.9928 -0.2656 29 1 -0.3634 0.2663 0.9926 30 1 1.0393 1.1355 2.6482 31 1 -0.2779 1.7332 1.6034 32 1 -0.4683 3.4043 3.2150 33 1 1.2112 3.1620 3.7978 34 1 2.5573 5.5345 2.9207 35 1 2.9451 8.3483 4.6697 36 1 2.3271 4.1254 0.2151 37 1 3.1002 3.6263 1.7496 38 1 1.6767 -0.2073 2.1392 39 1 1.6767 -1.7488 1.2493 40 1 3.9334 -1.2340 2.1398 41 1 3.9329 0.3072 1.2498 42 1 3.9345 -1.2338 -2.1388 43 1 3.9334 0.3074 -1.2487 44 1 1.6767 -1.7490 -1.2491 45 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969125205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:28 Heat of formation + Delta-G solvation = -143.842773 kcal Electronic energy + Delta-G solvation = -28257.455074 eV Core-core repulsion = 24137.786995 eV Total energy + Delta-G solvation = -4119.668079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00619 -48.00062 -41.93398 -39.22429 -37.69870 -36.00339 -33.74324 -32.81151 -32.12911 -30.98000 -29.25105 -27.13379 -25.93451 -24.89233 -24.21648 -22.72232 -21.99641 -21.57557 -19.90413 -19.28152 -18.45845 -18.08996 -17.50589 -17.29060 -17.11396 -16.40401 -16.25870 -15.67563 -15.53988 -15.30193 -14.99939 -14.74775 -14.62152 -14.52575 -14.33847 -14.08443 -13.87035 -13.76245 -13.58854 -13.31664 -13.18161 -13.10652 -12.97890 -12.89608 -12.69826 -12.53243 -12.37890 -12.18550 -12.06260 -11.94657 -11.78093 -11.66890 -11.49220 -11.08320 -10.90492 -10.54729 -9.60770 -9.04096 -7.94960 -5.24962 1.49760 1.50988 1.57975 1.59239 1.91552 2.57482 2.75622 3.06542 3.24984 3.33065 3.37106 3.47873 3.67193 3.72116 3.82198 3.99652 4.03054 4.04230 4.11989 4.25348 4.28426 4.30075 4.51442 4.54021 4.59518 4.65501 4.71551 4.77419 4.81330 4.83758 4.89916 4.99493 5.01764 5.08464 5.14846 5.24844 5.27213 5.29287 5.36068 5.44837 5.55302 6.25845 6.57174 7.12875 7.32719 8.04659 8.28112 9.28407 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.003026 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.358868 B = 9250.086721 C = 9596.756734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C 0.532 3.468 4 O -0.578 6.578 5 N -0.608 5.608 6 C 0.095 3.905 7 C -0.145 4.145 8 C 0.165 3.835 9 H 0.059 0.941 10 N -0.730 5.730 11 C -0.239 4.239 12 H 0.081 0.919 13 C -0.073 4.073 14 N -0.970 5.970 15 Si 0.973 3.027 16 H -0.285 1.285 17 H -0.300 1.300 18 H -0.268 1.268 19 C 0.108 3.892 20 C -0.109 4.109 21 C -0.162 4.162 22 C 0.286 3.714 23 F -0.200 7.200 24 F -0.219 7.219 25 C -0.173 4.173 26 C -0.087 4.087 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.373 0.627 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -22.913 -7.093 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C 0.322 3.678 4 O -0.459 6.459 5 N -0.340 5.340 6 C -0.027 4.027 7 C -0.186 4.186 8 C 0.055 3.945 9 H 0.077 0.923 10 N -0.370 5.370 11 C -0.371 4.371 12 H 0.099 0.901 13 C -0.266 4.266 14 N -0.620 5.620 15 Si 0.802 3.198 16 H -0.212 1.212 17 H -0.227 1.227 18 H -0.193 1.193 19 C -0.017 4.017 20 C -0.146 4.146 21 C -0.200 4.200 22 C 0.250 3.750 23 F -0.182 7.182 24 F -0.200 7.200 25 C -0.211 4.211 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.458 -22.686 -7.598 24.539 hybrid contribution 0.744 1.309 0.426 1.565 sum -4.715 -21.376 -7.172 23.035 Atomic orbital electron populations 1.22117 0.89820 1.04479 1.04213 1.20901 0.99279 0.89317 0.98086 1.20905 0.79719 0.87782 0.79393 1.90601 1.39347 1.78452 1.37462 1.48511 1.43111 1.13909 1.28502 1.22690 0.93203 0.98309 0.88478 1.23231 1.02672 0.94295 0.98418 1.21439 0.93834 0.87254 0.91978 0.92328 1.42415 1.07361 1.23381 1.63819 1.19596 0.91506 0.99701 1.26267 0.90076 1.25558 0.97228 1.01463 1.02329 1.69819 1.12544 1.33359 1.46305 0.85155 0.77971 0.78347 0.78359 1.21225 1.22708 1.19303 1.22242 0.97259 0.82607 0.99548 1.21823 0.91980 1.03452 0.97330 1.22546 0.99281 1.01479 0.96650 1.21303 0.74395 0.79396 0.99927 1.92965 1.88264 1.39141 1.97781 1.92971 1.32481 1.96699 1.97814 1.22810 0.99252 1.03223 0.95796 1.21400 0.92328 1.01792 0.96965 0.92661 0.88707 0.89314 0.88686 0.88032 0.89665 0.91900 0.79455 0.94051 0.92417 0.92529 0.87952 0.87156 0.87863 0.90955 0.89263 0.88386 0.87991 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.79 71.98 0.56 -1.13 16 2 C -0.07 -1.21 0.50 -52.93 -0.03 -1.24 16 3 C 0.53 13.73 5.04 87.66 0.44 14.17 16 4 O -0.58 -19.48 13.81 -3.05 -0.04 -19.52 16 5 N -0.61 -15.82 3.33 -810.97 -2.70 -18.52 16 6 C 0.09 1.87 5.15 86.73 0.45 2.31 16 7 C -0.15 -4.06 6.65 31.78 0.21 -3.85 16 8 C 0.16 5.97 3.68 46.38 0.17 6.15 16 9 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 10 N -0.73 -34.94 5.28 -316.39 -1.67 -36.61 16 11 C -0.24 -12.59 9.98 84.04 0.84 -11.75 16 12 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 13 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 14 N -0.97 -58.10 13.06 21.65 0.28 -57.81 16 15 Si 0.97 44.60 29.55 68.60 2.03 46.63 16 16 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.11 3.63 6.58 86.79 0.57 4.20 16 20 C -0.11 -1.50 4.43 30.59 0.14 -1.37 16 21 C -0.16 -3.06 5.23 30.59 0.16 -2.90 16 22 C 0.29 6.19 2.10 30.59 0.06 6.25 16 23 F -0.20 -4.13 16.03 44.97 0.72 -3.41 16 24 F -0.22 -5.79 17.06 44.97 0.77 -5.02 16 25 C -0.17 -3.72 5.16 30.61 0.16 -3.57 16 26 C -0.09 -1.48 4.21 30.61 0.13 -1.35 16 27 H 0.05 0.76 8.05 -2.39 -0.02 0.74 16 28 H 0.09 0.66 8.06 -2.38 -0.02 0.64 16 29 H 0.09 0.78 5.02 -2.38 -0.01 0.77 16 30 H 0.10 1.40 5.45 -2.39 -0.01 1.39 16 31 H 0.10 1.49 5.71 -2.38 -0.01 1.48 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.37 19.54 7.71 -92.70 -0.71 18.83 16 35 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 36 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 37 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 38 H 0.10 1.19 4.95 -2.39 -0.01 1.18 16 39 H 0.11 1.08 7.80 -2.39 -0.02 1.06 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.70 7.22 -2.39 -0.02 1.68 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 2.71 5.42 -2.38 -0.01 2.70 16 44 H 0.10 1.26 7.80 -2.39 -0.02 1.24 16 45 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 Total: -1.00 -67.48 345.57 4.02 -63.46 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.30 Total: 28.48 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 4.33 Total: 2.32 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.08 Total: -112.94 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 1.49 Total: -8.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.48 4.02 -63.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969125205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.387 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds