Wall clock time and date at job start Tue Mar 31 2020 11:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47264 * 269.99730 * 3 2 1 5 5 H 1.48500 * 109.47001 * 30.00074 * 3 2 1 6 6 H 1.48501 * 109.46842 * 150.00029 * 3 2 1 7 7 C 1.38808 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00136 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.63852 * 31.85414 * 10 9 7 12 12 C 1.55156 * 110.86889 * 268.60770 * 10 9 7 13 13 C 1.55129 * 101.48702 * 205.89697 * 12 10 9 14 14 N 1.47426 * 104.71966 * 37.29826 * 13 12 10 15 15 C 1.34774 * 125.64909 * 155.81971 * 14 13 12 16 16 O 1.21285 * 120.00019 * 179.68813 * 15 14 13 17 17 C 1.50699 * 119.99942 * 359.68882 * 15 14 13 18 18 C 1.52997 * 109.47078 * 59.99862 * 17 15 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.53002 * 109.46982 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47122 * 59.99891 * 21 20 19 23 23 F 1.39897 * 109.46937 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 25 25 C 1.53000 * 109.47083 * 179.97438 * 17 15 14 26 26 C 1.47029 * 108.70387 * 335.55220 * 14 13 12 27 27 H 0.97004 * 120.00228 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00045 * 359.97438 * 9 7 2 29 29 H 1.09005 * 111.00783 * 324.13936 * 12 10 9 30 30 H 1.09001 * 111.00693 * 87.94894 * 12 10 9 31 31 H 1.08995 * 110.49585 * 278.45479 * 13 12 10 32 32 H 1.09000 * 110.34088 * 156.05488 * 13 12 10 33 33 H 1.09002 * 109.46959 * 299.99950 * 17 15 14 34 34 H 1.08996 * 109.47853 * 300.00179 * 18 17 15 35 35 H 1.09002 * 109.47153 * 60.00207 * 18 17 15 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09002 * 109.47067 * 299.99652 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 24 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 24 20 19 42 42 H 1.08992 * 109.47399 * 299.99938 * 25 17 15 43 43 H 1.09004 * 109.46724 * 60.00424 * 25 17 15 44 44 H 1.08996 * 109.88443 * 120.70723 * 26 14 13 45 45 H 1.09004 * 109.88339 * 241.72221 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9999 -3.5562 0.5407 12 6 2.3049 -4.1538 -1.4473 13 6 2.4279 -5.6851 -1.2319 14 7 1.4397 -5.9965 -0.1831 15 6 0.8590 -7.1960 0.0177 16 8 0.0601 -7.3398 0.9189 17 6 1.2023 -8.3587 -0.8775 18 6 2.7006 -8.6525 -0.7800 19 6 3.0490 -9.8333 -1.6884 20 6 2.2577 -11.0665 -1.2479 21 6 2.6057 -12.2471 -2.1567 22 9 3.9758 -12.5159 -2.0679 23 9 1.8826 -13.3748 -1.7536 24 6 0.7594 -10.7727 -1.3455 25 6 0.4115 -9.5922 -0.4372 26 6 1.1975 -4.7835 0.6115 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 1.4597 -3.9132 -2.0923 30 1 3.2303 -3.7414 -1.8494 31 1 3.4320 -5.9438 -0.8959 32 1 2.1856 -6.2178 -2.1515 33 1 0.9468 -8.1116 -1.9080 34 1 3.2644 -7.7738 -1.0933 35 1 2.9561 -8.8995 0.2505 36 1 4.1164 -10.0429 -1.6185 37 1 2.7935 -9.5866 -2.7189 38 1 2.5133 -11.3131 -0.2174 39 1 2.3499 -12.0002 -3.1871 40 1 0.1957 -11.6514 -1.0321 41 1 0.5039 -10.5260 -2.3760 42 1 0.6673 -9.8392 0.5931 43 1 -0.6561 -9.3832 -0.5065 44 1 0.1429 -4.5125 0.5623 45 1 1.4880 -4.9551 1.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970603330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:19 Heat of formation + Delta-G solvation = -147.664363 kcal Electronic energy + Delta-G solvation = -26896.136295 eV Core-core repulsion = 22776.302500 eV Total energy + Delta-G solvation = -4119.833795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.28976 -47.29015 -40.43752 -38.40584 -37.14142 -34.21998 -32.60126 -31.47454 -31.04412 -29.56654 -27.96304 -26.30824 -23.93599 -23.27069 -22.87912 -21.99304 -20.59077 -20.09868 -19.11249 -17.68118 -17.43904 -17.39083 -17.00586 -16.86083 -15.92899 -15.43245 -15.00237 -14.57163 -14.52335 -14.16056 -14.11630 -13.71302 -13.64527 -13.55226 -13.36586 -13.14130 -12.79613 -12.61271 -12.48364 -12.37763 -12.06516 -11.95604 -11.72658 -11.55822 -11.44645 -11.23808 -10.94173 -10.89116 -10.77545 -10.70147 -10.48797 -10.34616 -10.12788 -9.80390 -9.56877 -9.00972 -8.43018 -7.08878 -5.85823 -3.16768 2.73889 3.10513 3.38160 3.38935 3.43661 3.45483 3.81711 3.98631 4.08980 4.43680 4.48600 4.51389 4.55390 4.80804 4.90835 4.92326 4.98420 5.00490 5.05880 5.10895 5.23198 5.29880 5.41365 5.49284 5.51591 5.53230 5.61647 5.63240 5.71748 5.77264 5.82475 5.92038 5.97458 6.07910 6.10799 6.22280 6.32824 6.53206 6.57355 6.84825 7.61268 7.71038 8.29344 8.32026 9.42906 9.97019 10.31547 11.36297 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.002327 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.127439 B =12029.488315 C =12554.978688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.156 4.156 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.527 3.473 16 O -0.545 6.545 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.139 4.139 21 C 0.264 3.736 22 F -0.207 7.207 23 F -0.206 7.206 24 C -0.114 4.114 25 C -0.096 4.096 26 C 0.099 3.901 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -23.766 -6.773 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.198 4.198 13 C -0.025 4.025 14 N -0.345 5.345 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.124 4.124 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.159 4.159 21 C 0.210 3.790 22 F -0.188 7.188 23 F -0.188 7.188 24 C -0.151 4.151 25 C -0.134 4.134 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.802 -23.764 -6.230 25.243 hybrid contribution 0.216 0.866 -0.078 0.896 sum 6.018 -22.898 -6.309 24.502 Atomic orbital electron populations 1.69665 1.05180 1.25929 1.56934 1.24784 0.95532 0.97861 1.02493 0.86165 0.78661 0.83632 0.77541 1.21626 1.21709 1.20665 1.19216 0.91041 0.83812 1.43624 0.90946 1.42371 1.05822 0.99390 1.87957 1.21175 0.94568 0.85716 0.92522 0.91590 1.23627 1.02754 0.91737 1.01634 1.22523 0.91743 0.97923 0.90343 1.48498 1.42904 1.09814 1.33277 1.20244 0.80483 0.82630 0.85076 1.90698 1.34855 1.83397 1.33367 1.21312 0.97124 0.93830 1.00150 1.21650 0.94074 0.98760 1.00884 1.21526 1.00146 0.93213 1.00013 1.22326 0.98300 0.94143 1.01085 1.22026 0.73005 0.83154 1.00815 1.92978 1.33366 1.94724 1.97718 1.92978 1.77708 1.55264 1.92827 1.21557 0.93179 0.99367 1.01032 1.21288 1.00424 0.91953 0.99720 1.22351 1.01348 0.84001 0.94771 0.93320 0.77942 0.90645 0.90547 0.91436 0.91266 0.88537 0.89933 0.91118 0.90486 0.90954 0.88615 0.87361 0.90556 0.91147 0.90884 0.90554 0.91196 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.12 5.23 -51.65 -0.27 -17.39 16 10 C 0.17 3.18 3.60 -66.09 -0.24 2.94 16 11 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 12 C -0.16 -2.38 6.79 -24.46 -0.17 -2.55 16 13 C 0.10 1.15 5.14 -2.41 -0.01 1.14 16 14 N -0.61 -8.89 3.32 -170.38 -0.57 -9.45 16 15 C 0.53 7.66 7.22 -10.99 -0.08 7.58 16 16 O -0.55 -10.08 16.31 5.55 0.09 -9.99 16 17 C -0.10 -1.00 1.88 -91.77 -0.17 -1.18 16 18 C -0.12 -0.91 5.01 -26.73 -0.13 -1.05 16 19 C -0.11 -0.67 5.08 -26.73 -0.14 -0.80 16 20 C -0.14 -0.90 2.31 -90.62 -0.21 -1.11 16 21 C 0.26 1.73 4.75 37.16 0.18 1.91 16 22 F -0.21 -1.76 16.82 2.25 0.04 -1.73 16 23 F -0.21 -1.79 16.82 2.25 0.04 -1.75 16 24 C -0.11 -0.76 5.08 -26.76 -0.14 -0.89 16 25 C -0.10 -0.89 4.49 -26.76 -0.12 -1.01 16 26 C 0.10 1.72 6.62 -3.06 -0.02 1.70 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.39 10.01 7.56 -40.82 -0.31 9.70 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 32 H 0.07 0.66 7.34 -51.93 -0.38 0.28 16 33 H 0.10 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.08 0.62 4.98 -51.93 -0.26 0.36 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.46 7.80 -51.93 -0.41 0.05 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.51 7.80 -51.93 -0.41 0.11 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 44 H 0.07 1.36 7.72 -51.93 -0.40 0.96 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -31.65 359.55 -8.17 -39.82 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.12 Total: 5.51 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.49 Total: -0.38 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.11 Total: -53.58 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.65 -8.17 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970603330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.848 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds