Wall clock time and date at job start Tue Mar 31 2020 11:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 110.88840 * 2 1 4 4 C 1.54911 * 111.00838 * 236.07922 * 2 1 3 5 5 N 1.47428 * 104.83256 * 278.93505 * 4 2 1 6 6 C 1.36935 * 125.65049 * 155.92230 * 5 4 2 7 7 H 1.08002 * 119.99772 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00027 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00063 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99839 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47170 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47084 * 120.00333 * 10 8 6 13 13 H 1.48498 * 109.47305 * 240.00330 * 10 8 6 14 14 C 1.47484 * 108.75751 * 335.89257 * 5 4 2 15 15 C 1.54329 * 107.03573 * 1.02152 * 14 5 4 16 16 H 1.09009 * 110.71853 * 140.69606 * 15 14 5 17 17 N 1.46501 * 110.72101 * 263.79177 * 15 14 5 18 18 C 1.34781 * 119.99564 * 271.15661 * 17 15 14 19 19 O 1.21273 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99302 * 180.02562 * 18 17 15 21 21 H 1.08997 * 110.01923 * 301.38734 * 20 18 17 22 22 C 1.53876 * 110.03013 * 180.02562 * 20 18 17 23 23 C 1.54267 * 106.59870 * 240.71414 * 22 20 18 24 24 C 1.54891 * 104.19324 * 336.39035 * 23 22 20 25 25 F 1.39908 * 110.75553 * 279.62631 * 24 23 22 26 26 F 1.39901 * 110.75625 * 156.25744 * 24 23 22 27 27 C 1.54261 * 110.03593 * 62.83277 * 20 18 17 28 28 H 1.08994 * 109.47445 * 296.11879 * 1 2 3 29 29 H 1.09001 * 109.47383 * 56.11927 * 1 2 3 30 30 H 1.08996 * 109.47282 * 176.11350 * 1 2 3 31 31 H 1.08993 * 109.47874 * 183.87784 * 3 2 1 32 32 H 1.08996 * 109.47104 * 303.88706 * 3 2 1 33 33 H 1.09005 * 109.46708 * 63.87601 * 3 2 1 34 34 H 1.09004 * 110.36649 * 37.77178 * 4 2 1 35 35 H 1.08995 * 110.36830 * 159.98472 * 4 2 1 36 36 H 0.97002 * 119.99890 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.03371 * 241.66674 * 14 5 4 38 38 H 1.08992 * 109.96779 * 120.34600 * 14 5 4 39 39 H 0.96989 * 119.99870 * 91.15945 * 17 15 14 40 40 H 1.08995 * 110.03160 * 359.97438 * 22 20 18 41 41 H 1.08998 * 110.03319 * 121.42692 * 22 20 18 42 42 H 1.09004 * 110.48597 * 95.06674 * 23 22 20 43 43 H 1.08994 * 110.48679 * 217.71200 * 23 22 20 44 44 H 1.09000 * 110.48928 * 261.57113 * 27 20 18 45 45 H 1.08999 * 110.48469 * 24.21522 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0853 -0.8070 -1.2000 5 7 2.0139 -2.2162 -0.7726 6 6 1.9465 -3.3006 -1.6060 7 1 1.9429 -3.1593 -2.6768 8 6 1.8837 -4.5814 -1.0748 9 7 1.8885 -4.7536 0.2301 10 14 1.7924 -6.0607 -2.2118 11 1 1.8024 -5.6011 -3.6239 12 1 2.9620 -6.9433 -1.9707 13 1 0.5407 -6.8138 -1.9448 14 6 2.0279 -2.2660 0.7014 15 6 2.0861 -0.8074 1.2025 16 1 1.4540 -0.6759 2.0808 17 7 3.4667 -0.4150 1.4963 18 6 3.9811 -0.6283 2.7237 19 8 3.3014 -1.1455 3.5847 20 6 5.4010 -0.2240 3.0261 21 1 6.0862 -0.7327 2.3481 22 6 5.7487 -0.5712 4.4843 23 6 6.1029 0.7586 5.1815 24 6 6.5365 1.6909 4.0232 25 9 7.8586 1.4314 3.6462 26 9 6.3762 3.0338 4.3811 27 6 5.5563 1.3045 2.8874 28 1 -0.3634 0.4524 0.9226 29 1 -0.3634 0.5729 -0.8532 30 1 -0.3633 -1.0253 -0.0697 31 1 3.1628 1.4035 -0.0695 32 1 1.6697 1.9732 -0.8531 33 1 1.7822 1.9302 0.9227 34 1 1.4672 -0.6468 -2.0835 35 1 3.1175 -0.5224 -1.4034 36 1 1.8443 -5.6487 0.6013 37 1 2.9051 -2.8122 1.0482 38 1 1.1207 -2.7473 1.0661 39 1 4.0103 -0.0017 0.8077 40 1 4.8903 -1.0317 4.9733 41 1 6.6031 -1.2474 4.5136 42 1 5.2304 1.1656 5.6926 43 1 6.9245 0.6144 5.8831 44 1 5.9790 1.5584 1.9153 45 1 4.5956 1.7998 3.0279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974650501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:16 Heat of formation + Delta-G solvation = -124.078849 kcal Electronic energy + Delta-G solvation = -28129.941217 eV Core-core repulsion = 24011.130166 eV Total energy + Delta-G solvation = -4118.811050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.03547 -47.20424 -40.13940 -38.40089 -36.40286 -33.91788 -33.07280 -30.72149 -29.79300 -28.45697 -27.80448 -26.74189 -25.65321 -23.66654 -22.13442 -21.41910 -20.22845 -19.69327 -18.72823 -17.94884 -17.11194 -16.81245 -16.57486 -16.07001 -15.70634 -15.30834 -14.64974 -14.34754 -14.18680 -13.97227 -13.87638 -13.71203 -13.53285 -13.32958 -13.18353 -12.71816 -12.49994 -12.33022 -12.04066 -12.01153 -11.76612 -11.61880 -11.56947 -11.39355 -11.10733 -11.02190 -10.89443 -10.81842 -10.79150 -10.40821 -10.26315 -10.03437 -9.88834 -9.66846 -9.51335 -8.66070 -8.49103 -6.84800 -5.70964 -3.05712 2.85465 3.35325 3.39067 3.44404 3.47146 3.54623 3.61429 3.98757 4.22499 4.48669 4.76322 4.85559 4.91917 4.94341 5.06541 5.11730 5.23255 5.25074 5.27220 5.34921 5.51765 5.57800 5.62187 5.71722 5.77217 5.88317 5.91485 5.99067 6.10080 6.13379 6.16484 6.20710 6.35610 6.55128 6.58381 6.64810 6.70863 6.92312 7.53421 7.61224 7.79264 7.89022 8.23122 8.53554 9.19898 9.80978 10.46162 11.39850 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.003693 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.785422 B = 7579.981501 C = 8406.086481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.176 3.824 15 C 0.123 3.877 16 H 0.088 0.912 17 N -0.707 5.707 18 C 0.519 3.481 19 O -0.535 6.535 20 C -0.113 4.113 21 H 0.109 0.891 22 C -0.117 4.117 23 C -0.155 4.155 24 C 0.276 3.724 25 F -0.192 7.192 26 F -0.197 7.197 27 C -0.148 4.148 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.015 0.985 36 H 0.252 0.748 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.395 0.605 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 14.849 6.214 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.330 5.330 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.051 3.949 15 C 0.018 3.982 16 H 0.106 0.894 17 N -0.357 5.357 18 C 0.304 3.696 19 O -0.412 6.412 20 C -0.134 4.134 21 H 0.127 0.873 22 C -0.155 4.155 23 C -0.193 4.193 24 C 0.240 3.760 25 F -0.173 7.173 26 F -0.178 7.178 27 C -0.187 4.187 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.230 0.770 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.154 14.247 6.837 16.959 hybrid contribution 0.486 -0.569 -1.025 1.269 sum 6.640 13.679 5.812 16.278 Atomic orbital electron populations 1.21594 0.93282 1.02959 1.00513 1.22009 0.96379 0.94091 0.96624 1.21677 1.00174 0.95617 1.01383 1.21616 0.96506 0.85766 0.94318 1.44559 1.86937 0.99685 1.01818 1.19075 1.43798 0.83999 0.88936 0.90444 1.24799 1.02208 0.97363 0.95942 1.69968 1.56744 1.20728 1.09146 0.86078 0.77264 0.83020 0.79578 1.20561 1.21828 1.21762 1.21595 1.01610 0.88447 0.83263 1.22508 0.81020 0.97638 0.97040 0.89423 1.45998 1.15070 1.62252 1.12374 1.20126 0.88346 0.78636 0.82484 1.90678 1.60999 1.43104 1.46386 1.21865 0.96158 0.95347 1.00061 0.87318 1.22143 1.04097 0.96270 0.92942 1.23323 1.03689 0.95665 0.96640 1.22029 0.79355 0.78165 0.96433 1.93012 1.38033 1.93754 1.92487 1.92999 1.95430 1.36448 1.92905 1.23270 1.00444 0.95992 0.98968 0.93354 0.92885 0.91190 0.93106 0.92619 0.92865 0.94132 0.96772 0.93743 0.93343 0.92835 0.76970 0.87488 0.90247 0.88235 0.89018 0.88375 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.57 37.15 0.32 -1.62 16 2 C -0.09 -1.41 0.83 -152.36 -0.13 -1.54 16 3 C -0.13 -1.58 8.22 37.16 0.31 -1.27 16 4 C 0.14 2.76 6.14 -2.53 -0.02 2.74 16 5 N -0.60 -14.69 3.39 -169.70 -0.58 -15.27 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.18 4.20 4.82 -2.81 -0.01 4.19 16 15 C 0.12 2.22 2.54 -66.09 -0.17 2.05 16 16 H 0.09 1.66 7.53 -51.92 -0.39 1.27 16 17 N -0.71 -10.80 4.46 -52.02 -0.23 -11.03 16 18 C 0.52 8.01 6.99 -10.98 -0.08 7.94 16 19 O -0.53 -10.30 14.89 5.56 0.08 -10.22 16 20 C -0.11 -1.28 3.30 -90.65 -0.30 -1.58 16 21 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 22 C -0.12 -1.26 6.40 -25.61 -0.16 -1.42 16 23 C -0.16 -1.42 6.43 -25.07 -0.16 -1.59 16 24 C 0.28 2.81 2.51 -24.72 -0.06 2.75 16 25 F -0.19 -2.18 17.21 2.25 0.04 -2.14 16 26 F -0.20 -2.22 17.21 2.25 0.04 -2.18 16 27 C -0.15 -1.41 5.92 -25.06 -0.15 -1.55 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 31 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.01 0.27 7.98 -51.93 -0.41 -0.14 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 38 H 0.05 1.46 7.39 -51.93 -0.38 1.07 16 39 H 0.40 5.18 7.01 -40.82 -0.29 4.90 16 40 H 0.11 1.37 6.39 -51.93 -0.33 1.03 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 0.96 7.85 -51.93 -0.41 0.56 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -31.64 360.15 -7.65 -39.29 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.11 Total: 3.19 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.86 Total: 2.41 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.24 Total: -52.76 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.08 Total: -4.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.64 -7.65 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974650501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.793 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds