Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 110.91372 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90403 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.36940 * 125.65165 * 155.84166 * 5 4 2 7 7 H 1.08003 * 119.99660 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00559 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99776 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00230 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46531 * 60.00328 * 10 8 6 12 12 H 1.48502 * 109.47014 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47009 * 300.00047 * 10 8 6 14 14 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 15 15 C 1.54321 * 107.26791 * 1.06162 * 14 5 4 16 16 H 1.08998 * 110.71927 * 140.55469 * 15 14 5 17 17 N 1.46499 * 110.72384 * 263.65067 * 15 14 5 18 18 C 1.34775 * 120.00025 * 273.55367 * 17 15 14 19 19 O 1.21278 * 120.00026 * 359.97438 * 18 17 15 20 20 C 1.50704 * 120.00179 * 179.97438 * 18 17 15 21 21 C 1.52995 * 109.47327 * 179.97438 * 20 18 17 22 22 C 1.53779 * 113.61409 * 274.13687 * 21 20 18 23 23 C 1.53955 * 87.01831 * 220.04641 * 22 21 20 24 24 F 1.39902 * 113.53683 * 270.81235 * 23 22 21 25 25 F 1.39899 * 113.66784 * 139.93045 * 23 22 21 26 26 C 1.53774 * 113.61472 * 176.52718 * 21 20 18 27 27 H 1.09000 * 109.47194 * 297.54657 * 1 2 3 28 28 H 1.09001 * 109.47578 * 57.55102 * 1 2 3 29 29 H 1.09003 * 109.46933 * 177.54830 * 1 2 3 30 30 H 1.08997 * 109.46961 * 182.44877 * 3 2 1 31 31 H 1.09003 * 109.46792 * 302.45175 * 3 2 1 32 32 H 1.08997 * 109.46833 * 62.45143 * 3 2 1 33 33 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 34 34 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 35 35 H 0.97004 * 120.00521 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.88266 * 120.47537 * 14 5 4 37 37 H 1.09000 * 109.88221 * 241.64354 * 14 5 4 38 38 H 0.97004 * 119.99991 * 93.54445 * 17 15 14 39 39 H 1.08995 * 109.46892 * 299.99499 * 20 18 17 40 40 H 1.09002 * 109.47042 * 59.99548 * 20 18 17 41 41 H 1.09007 * 112.84994 * 45.33107 * 21 20 18 42 42 H 1.08997 * 113.61601 * 334.56768 * 22 21 20 43 43 H 1.08999 * 113.61303 * 105.47084 * 22 21 20 44 44 H 1.09002 * 113.61897 * 254.52850 * 26 21 20 45 45 H 1.08999 * 113.61782 * 25.43619 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 3.4280 -1.2429 0.7759 6 6 4.4639 -1.5649 1.6117 7 1 4.3315 -1.5086 2.6821 8 6 5.6840 -1.9637 1.0833 9 7 5.8451 -2.0328 -0.2212 10 14 7.0971 -2.4023 2.2235 11 1 6.6961 -3.5356 3.0953 12 1 8.2808 -2.7938 1.4168 13 1 7.4375 -1.2269 3.0646 14 6 3.4707 -1.2757 -0.6934 15 6 2.0901 -0.8107 -1.2023 16 1 2.1972 -0.1737 -2.0803 17 7 1.2331 -1.9609 -1.5003 18 6 1.2909 -2.5483 -2.7119 19 8 2.0520 -2.1245 -3.5557 20 6 0.4097 -3.7319 -3.0184 21 6 0.6695 -4.2040 -4.4503 22 6 -0.1590 -3.4533 -5.5062 23 6 -0.3425 -4.8101 -6.2102 24 9 0.6646 -5.0994 -7.1372 25 9 -1.6287 -5.0066 -6.7243 26 6 -0.1217 -5.4648 -4.8363 27 1 -0.3633 0.4753 0.9112 28 1 -0.3634 0.5514 -0.8672 29 1 -0.3633 -1.0268 -0.0440 30 1 3.1649 1.4021 -0.0439 31 1 1.6907 1.9655 -0.8672 32 1 1.7619 1.9383 0.9111 33 1 1.4520 -1.6704 1.4023 34 1 2.1542 -0.1726 2.0841 35 1 6.6978 -2.3112 -0.5905 36 1 4.2461 -0.6014 -1.0569 37 1 3.6693 -2.2913 -1.0359 38 1 0.6241 -2.2997 -0.8256 39 1 0.6330 -4.5407 -2.3227 40 1 -0.6361 -3.4425 -2.9156 41 1 1.7311 -4.2642 -4.6901 42 1 -1.0867 -3.0345 -5.1165 43 1 0.4205 -2.7346 -6.0857 44 1 0.4877 -6.3677 -4.8758 45 1 -1.0393 -5.5971 -4.2631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974752008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = -96.403836 kcal Electronic energy + Delta-G solvation = -27509.551649 eV Core-core repulsion = 23391.940677 eV Total energy + Delta-G solvation = -4117.610972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.92774 -47.27171 -39.95676 -38.58640 -37.31279 -33.87209 -33.00148 -30.73674 -30.31788 -27.92042 -26.75620 -26.43826 -25.63939 -23.92529 -22.90965 -20.66291 -20.03574 -19.78263 -18.73728 -17.52646 -16.94828 -16.70517 -16.64429 -16.32786 -15.71712 -15.33996 -14.77670 -14.23959 -14.14624 -13.95165 -13.89090 -13.68233 -13.56980 -13.43100 -13.17961 -12.75552 -12.56997 -12.48291 -12.03413 -11.98205 -11.70658 -11.49316 -11.33802 -11.28009 -11.09196 -11.01680 -10.97857 -10.76981 -10.56935 -10.40020 -10.26065 -9.99590 -9.89585 -9.64743 -9.44206 -8.63031 -8.43736 -6.82850 -5.68922 -3.04019 3.00668 3.32130 3.40261 3.44548 3.46680 3.47182 3.66134 4.11659 4.18156 4.29092 4.50021 4.89748 4.95758 5.07106 5.18670 5.23697 5.25669 5.28050 5.33299 5.42205 5.52828 5.54812 5.60536 5.65045 5.70192 5.79173 5.88272 6.01425 6.13836 6.14497 6.18408 6.22414 6.38371 6.56917 6.59570 6.66156 6.74802 6.94784 7.55209 7.64803 7.82433 7.94964 8.26084 8.63243 9.22187 9.82915 10.48296 11.41421 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003341 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.459006 B = 8377.863594 C = 9617.488988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.232 4.232 7 H 0.076 0.924 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.177 3.823 15 C 0.124 3.876 16 H 0.085 0.915 17 N -0.712 5.712 18 C 0.510 3.490 19 O -0.538 6.538 20 C -0.129 4.129 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.250 3.750 24 F -0.180 7.180 25 F -0.195 7.195 26 C -0.162 4.162 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.014 0.986 34 H 0.040 0.960 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.394 0.606 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 -2.133 -6.102 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.051 3.949 15 C 0.019 3.981 16 H 0.103 0.897 17 N -0.363 5.363 18 C 0.296 3.704 19 O -0.415 6.415 20 C -0.169 4.169 21 C -0.104 4.104 22 C -0.195 4.195 23 C 0.214 3.786 24 F -0.161 7.161 25 F -0.176 7.176 26 C -0.200 4.200 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.229 0.771 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.732 -1.911 -6.781 17.237 hybrid contribution 0.514 -0.577 0.753 1.079 sum -15.217 -2.489 -6.028 16.556 Atomic orbital electron populations 1.21672 0.94785 1.01010 1.01354 1.22055 0.94360 0.96027 0.96670 1.21591 1.02428 0.93756 1.00531 1.21611 0.87810 0.94512 0.94285 1.44428 1.07590 1.79013 1.01870 1.18972 0.89473 1.38729 0.88842 0.90582 1.24804 0.97795 1.01714 0.95942 1.69953 1.24232 1.53093 1.09214 0.86230 0.81989 0.78213 0.79478 1.21268 1.21622 1.21199 1.21505 0.89711 1.00435 0.83247 1.22491 0.92446 0.86260 0.96862 0.89669 1.46049 1.42744 1.33130 1.14355 1.20400 0.83507 0.84327 0.82195 1.90710 1.39460 1.64389 1.46957 1.21597 1.00438 0.97654 0.97236 1.22144 1.01068 0.93618 0.93593 1.24183 1.02472 0.95387 0.97428 1.22193 0.71615 0.99984 0.84791 1.93023 1.59704 1.94526 1.68806 1.92994 1.38937 1.96166 1.89519 1.24188 1.03004 0.99994 0.92851 0.92653 0.92883 0.93063 0.91284 0.93420 0.92844 0.96797 0.94199 0.93641 0.92989 0.93406 0.77064 0.88203 0.88841 0.86623 0.87316 0.88436 0.88691 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.36 37.16 0.31 -1.25 16 2 C -0.09 -1.42 0.84 -152.20 -0.13 -1.55 16 3 C -0.13 -1.95 8.61 37.16 0.32 -1.63 16 4 C 0.14 2.77 6.13 -2.53 -0.02 2.75 16 5 N -0.60 -14.75 3.38 -170.08 -0.58 -15.33 16 6 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -27.15 10.31 55.49 0.57 -26.57 16 10 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.18 4.25 4.73 -3.06 -0.01 4.23 16 15 C 0.12 2.27 2.51 -65.94 -0.17 2.10 16 16 H 0.09 1.64 7.60 -51.93 -0.39 1.24 16 17 N -0.71 -10.82 4.56 -51.88 -0.24 -11.05 16 18 C 0.51 7.79 7.83 -10.98 -0.09 7.70 16 19 O -0.54 -10.49 15.51 5.56 0.09 -10.40 16 20 C -0.13 -1.31 5.52 -27.88 -0.15 -1.46 16 21 C -0.09 -0.90 3.09 -89.81 -0.28 -1.17 16 22 C -0.16 -1.57 7.43 -25.83 -0.19 -1.76 16 23 C 0.25 2.65 3.28 -25.83 -0.08 2.56 16 24 F -0.18 -2.28 17.38 2.25 0.04 -2.24 16 25 F -0.20 -2.21 17.41 2.25 0.04 -2.17 16 26 C -0.16 -1.37 7.43 -25.92 -0.19 -1.56 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.55 6.19 -51.93 -0.32 0.23 16 30 H 0.07 1.28 7.82 -51.93 -0.41 0.87 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 34 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.05 1.43 7.38 -51.93 -0.38 1.05 16 37 H 0.05 1.33 7.40 -51.93 -0.38 0.94 16 38 H 0.39 5.02 6.85 -40.82 -0.28 4.74 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 41 H 0.12 1.50 7.73 -51.93 -0.40 1.10 16 42 H 0.11 0.89 7.92 -51.93 -0.41 0.47 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.50 365.06 -7.68 -40.18 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.15 Total: 2.86 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.93 Total: 2.21 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.24 Total: -52.96 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.50 -7.68 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974752008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.222 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds