Wall clock time and date at job start Tue Mar 31 2020 11:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 110.63798 * 2 1 4 4 C 1.54315 * 110.72074 * 236.66444 * 2 1 3 5 5 N 1.47017 * 107.27451 * 219.44474 * 4 2 1 6 6 C 1.36941 * 125.65253 * 178.97780 * 5 4 2 7 7 H 1.07992 * 119.99933 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00015 * 179.97438 * 6 5 4 9 9 N 1.31625 * 120.00003 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00086 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46794 * 59.99718 * 10 8 6 12 12 H 1.48493 * 109.47167 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.46948 * 300.00230 * 10 8 6 14 14 C 1.47471 * 108.71970 * 358.97486 * 5 4 2 15 15 C 1.54906 * 104.81210 * 24.07007 * 14 5 4 16 16 H 1.09002 * 111.00655 * 204.94912 * 15 14 5 17 17 N 1.46504 * 111.00267 * 81.13587 * 15 14 5 18 18 C 1.34773 * 119.99779 * 89.57865 * 17 15 14 19 19 O 1.21286 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00032 * 179.97438 * 18 17 15 21 21 C 1.52995 * 109.47418 * 180.02562 * 20 18 17 22 22 C 1.53787 * 113.61288 * 272.49931 * 21 20 18 23 23 C 1.53782 * 87.07881 * 220.01957 * 22 21 20 24 24 F 1.39907 * 113.61359 * 270.88051 * 23 22 21 25 25 F 1.39904 * 113.69009 * 139.99534 * 23 22 21 26 26 C 1.53774 * 87.08350 * 25.43078 * 23 22 21 27 27 H 1.08999 * 109.46995 * 296.85650 * 1 2 3 28 28 H 1.09000 * 109.46730 * 56.85836 * 1 2 3 29 29 H 1.08996 * 109.47047 * 176.85672 * 1 2 3 30 30 H 1.09001 * 109.46454 * 183.13873 * 3 2 1 31 31 H 1.08989 * 109.47344 * 303.14218 * 3 2 1 32 32 H 1.09004 * 109.46914 * 63.14367 * 3 2 1 33 33 H 1.08998 * 109.88341 * 338.86406 * 4 2 1 34 34 H 1.09007 * 109.88217 * 100.02646 * 4 2 1 35 35 H 0.97004 * 119.99336 * 179.97438 * 9 8 6 36 36 H 1.09008 * 110.34870 * 265.25136 * 14 5 4 37 37 H 1.09001 * 110.40581 * 142.92172 * 14 5 4 38 38 H 0.96998 * 119.99833 * 269.58084 * 17 15 14 39 39 H 1.09003 * 109.47205 * 300.00903 * 20 18 17 40 40 H 1.08998 * 109.46902 * 60.00406 * 20 18 17 41 41 H 1.08999 * 112.85016 * 43.80328 * 21 20 18 42 42 H 1.08999 * 113.61374 * 334.56498 * 22 21 20 43 43 H 1.08992 * 113.61206 * 105.46990 * 22 21 20 44 44 H 1.08999 * 113.61738 * 220.01689 * 26 23 22 45 45 H 1.09003 * 113.69024 * 89.13101 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5519 -0.7364 6 6 4.0043 -2.3994 -1.4977 7 1 3.7616 -2.5545 -2.5386 8 6 5.0871 -3.0584 -0.9319 9 7 5.3837 -2.8683 0.3363 10 14 6.1232 -4.2151 -1.9703 11 1 6.7141 -3.4645 -3.1072 12 1 7.2107 -4.7881 -1.1373 13 1 5.2685 -5.3116 -2.4921 14 6 3.4632 -1.2494 0.6903 15 6 2.0790 -0.7934 1.2152 16 1 2.1850 -0.1483 2.0874 17 7 1.2266 -1.9457 1.5183 18 6 1.2503 -2.4963 2.7482 19 8 1.9768 -2.0375 3.6042 20 6 0.3731 -3.6813 3.0603 21 6 0.5897 -4.1076 4.5136 22 6 1.7471 -5.1034 4.6975 23 6 0.8558 -5.8296 5.7188 24 9 0.9962 -5.3506 7.0258 25 9 0.9325 -7.2244 5.6403 26 6 -0.3496 -5.2358 4.9712 27 1 -0.3633 0.4643 0.9168 28 1 -0.3633 0.5618 -0.8605 29 1 -0.3633 -1.0261 -0.0563 30 1 3.1577 1.4101 -0.0563 31 1 1.6717 1.9699 -0.8604 32 1 1.7629 1.9355 0.9169 33 1 1.3130 -1.4784 -1.5750 34 1 2.3741 -0.1057 -1.9975 35 1 6.1402 -3.3292 0.7317 36 1 4.1936 -0.4477 0.8002 37 1 3.7953 -2.1415 1.2214 38 1 0.6453 -2.3124 0.8338 39 1 -0.6720 -3.4083 2.9139 40 1 0.6291 -4.5075 2.3970 41 1 0.6252 -3.2629 5.2016 42 1 1.9608 -5.6939 3.8066 43 1 2.6403 -4.6584 5.1359 44 1 -1.1491 -4.8979 5.6306 45 1 -0.7104 -5.8617 4.1550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974752010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:12 Heat of formation + Delta-G solvation = -96.937613 kcal Electronic energy + Delta-G solvation = -27771.133863 eV Core-core repulsion = 23653.499745 eV Total energy + Delta-G solvation = -4117.634118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.83401 -47.17037 -39.87322 -38.54894 -37.25277 -33.82929 -33.01128 -30.73709 -30.24351 -27.97750 -26.74312 -26.32284 -25.62755 -23.85222 -22.85953 -20.66551 -19.93891 -19.71040 -18.68834 -17.43523 -16.88769 -16.65989 -16.59084 -16.24154 -15.77632 -15.22197 -14.53320 -14.43095 -14.05009 -13.94154 -13.83563 -13.50187 -13.47877 -13.23489 -13.20563 -12.82001 -12.61344 -12.43499 -12.07931 -11.92960 -11.77415 -11.37183 -11.30730 -11.19462 -11.16849 -11.01791 -10.88288 -10.78038 -10.46107 -10.41969 -10.24171 -9.96356 -9.82449 -9.70120 -9.36184 -8.69164 -8.34169 -6.82796 -5.64501 -3.07769 3.09738 3.38335 3.41711 3.43157 3.45081 3.58191 3.76667 4.20978 4.29960 4.37370 4.47179 4.96363 5.02109 5.17393 5.23295 5.27623 5.30430 5.33044 5.39137 5.50439 5.52133 5.61319 5.64509 5.75890 5.79189 5.84238 5.86176 6.01330 6.08850 6.17025 6.21994 6.24537 6.40191 6.47259 6.59843 6.68689 6.75765 6.99383 7.48758 7.60716 7.86806 8.04293 8.37634 8.72780 9.20646 9.82160 10.46346 11.37831 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.004235 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.167633 B = 6609.592855 C = 8426.585326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.075 0.925 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.124 3.876 16 H 0.085 0.915 17 N -0.703 5.703 18 C 0.512 3.488 19 O -0.543 6.543 20 C -0.129 4.129 21 C -0.084 4.084 22 C -0.157 4.157 23 C 0.250 3.750 24 F -0.182 7.182 25 F -0.195 7.195 26 C -0.162 4.162 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.019 0.981 37 H 0.113 0.887 38 H 0.396 0.604 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 -0.193 5.748 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.103 0.897 17 N -0.353 5.353 18 C 0.298 3.702 19 O -0.421 6.421 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.195 4.195 23 C 0.214 3.786 24 F -0.162 7.162 25 F -0.175 7.175 26 C -0.200 4.200 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.130 0.870 38 H 0.230 0.770 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.759 -0.022 6.414 15.181 hybrid contribution 0.428 -0.903 -0.849 1.312 sum -13.331 -0.926 5.564 14.475 Atomic orbital electron populations 1.21712 0.94669 1.01158 1.01219 1.21841 0.94805 0.95723 0.96520 1.21686 1.01931 0.94160 1.00839 1.21395 0.90282 0.92921 0.93648 1.44469 1.30639 1.50198 1.07414 1.18978 1.06508 1.17078 0.92881 0.90675 1.24781 0.98694 1.00578 0.96339 1.69804 1.29931 1.45973 1.10789 0.86207 0.79894 0.80665 0.79022 1.21255 1.21600 1.21257 1.22307 0.89264 1.01276 0.85030 1.22497 0.93309 0.86274 0.96073 0.89684 1.45807 1.44057 1.32998 1.12411 1.20351 0.83157 0.84312 0.82376 1.90689 1.41307 1.63073 1.47026 1.21591 1.00672 0.97983 0.96701 1.22122 0.94329 0.96730 0.97130 1.24173 0.99552 0.97127 0.98656 1.22177 1.01314 0.75119 0.80003 1.93009 1.96665 1.87462 1.39107 1.92999 1.97149 1.31197 1.96192 1.24183 0.96847 0.98198 1.00748 0.92875 0.92803 0.92931 0.91788 0.92748 0.93087 0.96122 0.95951 0.93650 0.96346 0.86970 0.76997 0.88668 0.88444 0.86882 0.86961 0.88335 0.88930 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.07 37.16 0.30 -1.31 16 2 C -0.09 -1.40 0.80 -152.67 -0.12 -1.52 16 3 C -0.13 -1.89 8.41 37.16 0.31 -1.58 16 4 C 0.14 2.78 6.42 -3.07 -0.02 2.76 16 5 N -0.60 -14.62 3.40 -170.04 -0.58 -15.20 16 6 C -0.23 -6.11 10.27 -15.06 -0.15 -6.27 16 7 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 10 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.15 3.51 5.28 -2.50 -0.01 3.50 16 15 C 0.12 2.29 2.61 -65.78 -0.17 2.12 16 16 H 0.09 1.63 7.53 -51.93 -0.39 1.23 16 17 N -0.70 -11.33 4.62 -51.73 -0.24 -11.56 16 18 C 0.51 8.25 7.83 -10.99 -0.09 8.16 16 19 O -0.54 -10.85 15.45 5.55 0.09 -10.77 16 20 C -0.13 -1.44 5.54 -27.89 -0.15 -1.59 16 21 C -0.08 -0.95 3.13 -89.81 -0.28 -1.23 16 22 C -0.16 -1.96 7.42 -25.91 -0.19 -2.15 16 23 C 0.25 2.97 3.27 -25.92 -0.08 2.89 16 24 F -0.18 -2.43 17.38 2.25 0.04 -2.39 16 25 F -0.19 -2.53 17.41 2.25 0.04 -2.49 16 26 C -0.16 -1.46 7.43 -25.92 -0.19 -1.65 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.61 6.41 -51.93 -0.33 0.28 16 30 H 0.06 1.08 7.59 -51.93 -0.39 0.69 16 31 H 0.05 0.71 8.14 -51.94 -0.42 0.28 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 34 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.02 0.49 7.81 -51.92 -0.41 0.08 16 37 H 0.11 3.12 5.88 -51.93 -0.31 2.82 16 38 H 0.40 5.61 7.03 -40.82 -0.29 5.32 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.02 7.84 -51.93 -0.41 0.61 16 41 H 0.11 1.42 7.67 -51.93 -0.40 1.02 16 42 H 0.11 1.34 7.90 -51.93 -0.41 0.93 16 43 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.11 0.83 8.10 -51.93 -0.42 0.40 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -31.74 363.69 -7.66 -39.40 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.07 Total: 4.96 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.96 Total: 1.81 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.26 Total: -52.85 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.74 -7.66 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974752010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.534 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds