Wall clock time and date at job start Tue Mar 31 2020 11:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 112.84441 * 2 1 4 4 O 1.21276 * 120.00179 * 230.32636 * 3 2 1 5 5 N 1.34777 * 119.99687 * 50.33504 * 3 2 1 6 6 C 1.46505 * 119.99714 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.88496 * 322.57202 * 6 5 3 8 8 C 1.54908 * 111.00088 * 86.45479 * 6 5 3 9 9 N 1.47425 * 104.92961 * 81.00982 * 8 6 5 10 10 C 1.36938 * 125.65179 * 204.15650 * 9 8 6 11 11 H 1.07995 * 120.00281 * 180.02562 * 10 9 8 12 12 C 1.38810 * 119.99650 * 0.02562 * 10 9 8 13 13 N 1.31621 * 120.00025 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00113 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47166 * 59.99694 * 14 12 10 16 16 H 1.48493 * 109.47565 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47135 * 300.00010 * 14 12 10 18 18 C 1.47290 * 108.55742 * 24.15407 * 9 8 6 19 19 C 1.54325 * 107.30599 * 358.92448 * 18 9 8 20 20 C 1.53003 * 110.72022 * 219.45263 * 19 18 9 21 21 C 1.53001 * 110.87121 * 96.25437 * 19 18 9 22 22 C 1.53776 * 113.61669 * 131.19444 * 2 1 3 23 23 C 1.53963 * 87.01809 * 89.23184 * 22 2 1 24 24 F 1.39899 * 113.53654 * 270.81287 * 23 22 2 25 25 F 1.39904 * 113.74124 * 139.93960 * 23 22 2 26 26 C 1.53773 * 113.61761 * 228.80953 * 2 1 3 27 27 H 1.09001 * 109.47011 * 69.67170 * 1 2 3 28 28 H 1.09005 * 109.46786 * 189.66459 * 1 2 3 29 29 H 1.08997 * 109.47431 * 309.66267 * 1 2 3 30 30 H 0.97002 * 120.00110 * 359.97438 * 5 3 2 31 31 H 1.09002 * 110.36632 * 199.90378 * 8 6 5 32 32 H 1.08995 * 110.36781 * 322.11615 * 8 6 5 33 33 H 0.97001 * 119.99611 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.85762 * 239.50064 * 18 9 8 35 35 H 1.08995 * 110.00297 * 118.43011 * 18 9 8 36 36 H 1.08995 * 109.46983 * 173.52221 * 20 19 18 37 37 H 1.09001 * 109.47276 * 293.52685 * 20 19 18 38 38 H 1.09004 * 109.46998 * 53.52573 * 20 19 18 39 39 H 1.09003 * 109.46715 * 306.38940 * 21 19 18 40 40 H 1.08999 * 109.47419 * 66.38594 * 21 19 18 41 41 H 1.08996 * 109.47162 * 186.39389 * 21 19 18 42 42 H 1.08999 * 113.62052 * 203.75129 * 22 2 1 43 43 H 1.09001 * 113.61341 * 334.65700 * 22 2 1 44 44 H 1.09001 * 113.61852 * 25.33913 * 26 2 1 45 45 H 1.08995 * 113.61793 * 156.16699 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3889 0.0000 4 8 2.9684 1.6874 -0.8084 5 7 1.6901 2.2991 0.8985 6 6 2.2593 3.6490 0.8989 7 1 3.3250 3.6215 0.6717 8 6 1.5040 4.5702 -0.0914 9 7 0.2966 5.0013 0.6364 10 6 -0.8742 5.4202 0.0627 11 1 -1.7048 5.7172 0.6857 12 6 -0.9932 5.4632 -1.3196 13 7 0.0191 5.1009 -2.0789 14 14 -2.5899 6.0353 -2.1023 15 1 -2.8804 7.4272 -1.6737 16 1 -2.4605 5.9900 -3.5809 17 1 -3.6981 5.1442 -1.6743 18 6 0.5614 4.9055 2.0821 19 6 1.9963 4.3631 2.2510 20 6 2.0658 3.3680 3.4112 21 6 2.9903 5.5070 2.4614 22 6 2.1461 -0.9280 1.0602 23 6 2.0951 -2.0419 -0.0013 24 9 0.8944 -2.7599 -0.0006 25 9 3.2231 -2.8696 -0.0039 26 6 2.1461 -0.9279 -1.0603 27 1 -0.3633 0.3570 -0.9637 28 1 -0.3633 -1.0131 0.1725 29 1 -0.3634 0.6559 0.7911 30 1 1.0074 2.0604 1.5449 31 1 2.1183 5.4323 -0.3513 32 1 1.2285 4.0171 -0.9892 33 1 -0.0640 5.1313 -3.0448 34 1 -0.1503 4.2215 2.5444 35 1 0.4810 5.8904 2.5420 36 1 3.0555 2.9125 3.4403 37 1 1.8783 3.8902 4.3495 38 1 1.3129 2.5925 3.2703 39 1 2.8858 6.2321 1.6542 40 1 2.7875 5.9938 3.4154 41 1 4.0055 5.1103 2.4643 42 1 3.1586 -0.6477 1.3507 43 1 1.4940 -1.1079 1.9149 44 1 1.4940 -1.1079 -1.9150 45 1 3.1580 -0.6467 -1.3517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977446122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:01 Heat of formation + Delta-G solvation = -90.865396 kcal Electronic energy + Delta-G solvation = -28601.068841 eV Core-core repulsion = 24483.698034 eV Total energy + Delta-G solvation = -4117.370807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.94864 -47.26658 -40.31921 -38.65827 -36.76817 -33.86703 -33.08997 -30.72461 -29.49434 -28.05577 -26.87649 -26.39772 -25.64367 -24.49174 -23.20127 -21.34001 -20.08377 -19.23231 -18.50615 -17.92068 -16.87937 -16.74455 -16.48761 -15.83756 -15.76519 -14.85145 -14.47263 -14.21157 -14.15484 -13.88326 -13.85180 -13.68168 -13.57089 -13.41437 -13.19204 -12.73598 -12.45834 -12.31519 -12.18059 -11.95734 -11.82009 -11.70797 -11.35548 -11.28607 -11.17861 -11.07580 -10.96419 -10.78188 -10.55530 -10.43361 -10.25428 -9.97682 -9.83225 -9.70656 -9.34624 -8.69434 -8.38860 -6.83138 -5.64162 -3.07525 2.90502 3.28623 3.38528 3.43284 3.45159 3.53251 3.68724 4.09994 4.17815 4.37856 4.47049 4.92709 5.01264 5.06326 5.19814 5.24294 5.26652 5.32078 5.38112 5.50344 5.59056 5.63080 5.75575 5.80116 5.82422 5.84020 5.94791 5.99137 6.06864 6.14586 6.21312 6.23477 6.37589 6.45866 6.57693 6.67276 6.72449 6.95695 7.46965 7.60174 7.85556 7.98981 8.37891 8.64488 9.20588 9.81948 10.46357 11.38088 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.004713 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.667165 B = 5939.146826 C = 7244.811762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C 0.534 3.466 4 O -0.537 6.537 5 N -0.696 5.696 6 C 0.124 3.876 7 H 0.085 0.915 8 C 0.146 3.854 9 N -0.600 5.600 10 C -0.225 4.225 11 H 0.075 0.925 12 C -0.008 4.008 13 N -0.917 5.917 14 Si 0.911 3.089 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.143 3.857 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.147 4.147 23 C 0.255 3.745 24 F -0.178 7.178 25 F -0.191 7.191 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.019 0.981 32 H 0.114 0.886 33 H 0.253 0.747 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -11.198 9.277 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C 0.318 3.682 4 O -0.414 6.414 5 N -0.345 5.345 6 C 0.018 3.982 7 H 0.103 0.897 8 C 0.020 3.980 9 N -0.326 5.326 10 C -0.354 4.354 11 H 0.093 0.907 12 C -0.204 4.204 13 N -0.565 5.565 14 Si 0.742 3.258 15 H -0.213 1.213 16 H -0.216 1.216 17 H -0.212 1.212 18 C 0.017 3.983 19 C -0.088 4.088 20 C -0.189 4.189 21 C -0.186 4.186 22 C -0.186 4.186 23 C 0.219 3.781 24 F -0.158 7.158 25 F -0.171 7.171 26 C -0.176 4.176 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.037 0.963 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.223 -10.961 8.477 14.808 hybrid contribution -1.269 0.133 -0.105 1.280 sum 3.954 -10.828 8.371 14.246 Atomic orbital electron populations 1.21751 0.90105 1.03308 1.04257 1.21846 0.98005 0.93145 0.97397 1.19676 0.82216 0.85334 0.80927 1.90694 1.32638 1.80000 1.38063 1.45766 1.41933 1.11935 1.34909 1.22536 0.97799 0.81469 0.96368 0.89746 1.22301 0.85980 0.94383 0.95286 1.44498 1.11880 1.77476 0.98780 1.18966 0.89776 1.36852 0.89780 0.90674 1.24776 0.97749 1.01813 0.96030 1.69793 1.29418 1.53418 1.03838 0.86210 0.82744 0.78474 0.78367 1.21269 1.21608 1.21249 1.21442 0.91733 0.97276 0.87851 1.21836 0.97100 0.95686 0.94208 1.21726 1.01175 0.98467 0.97514 1.21684 0.97506 0.97600 1.01801 1.24143 1.04599 0.92308 0.97500 1.22052 0.71627 0.83058 1.01407 1.92990 1.45073 1.80496 1.97277 1.93006 1.51044 1.75818 1.97269 1.24052 1.05641 0.90715 0.97227 0.90603 0.90762 0.91139 0.76888 0.96301 0.86823 0.93639 0.96114 0.95871 0.92795 0.92672 0.92991 0.91748 0.92700 0.93067 0.86690 0.88103 0.88297 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.95 37.16 0.33 -1.36 16 2 C -0.10 -1.30 1.25 -154.85 -0.19 -1.49 16 3 C 0.53 8.94 6.91 -10.98 -0.08 8.86 16 4 O -0.54 -11.00 15.65 5.56 0.09 -10.91 16 5 N -0.70 -11.33 4.58 -51.73 -0.24 -11.57 16 6 C 0.12 2.27 2.56 -65.78 -0.17 2.10 16 7 H 0.08 1.59 7.63 -51.93 -0.40 1.19 16 8 C 0.15 3.48 5.27 -2.53 -0.01 3.47 16 9 N -0.60 -14.53 3.40 -169.86 -0.58 -15.10 16 10 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 11 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 12 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 13 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 14 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.14 2.75 6.43 -2.92 -0.02 2.73 16 19 C -0.09 -1.37 0.80 -152.67 -0.12 -1.49 16 20 C -0.13 -1.60 8.07 37.16 0.30 -1.30 16 21 C -0.13 -1.86 8.41 37.16 0.31 -1.55 16 22 C -0.15 -1.52 7.01 -25.83 -0.18 -1.70 16 23 C 0.25 2.95 3.27 -25.82 -0.08 2.86 16 24 F -0.18 -2.14 15.52 2.25 0.03 -2.10 16 25 F -0.19 -2.39 17.42 2.25 0.04 -2.35 16 26 C -0.14 -1.72 6.78 -25.92 -0.18 -1.90 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 29 H 0.07 0.85 7.11 -51.93 -0.37 0.48 16 30 H 0.40 5.72 5.87 -40.82 -0.24 5.48 16 31 H 0.02 0.49 7.81 -51.93 -0.41 0.09 16 32 H 0.11 3.17 5.86 -51.93 -0.30 2.86 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.02 0.39 7.77 -51.93 -0.40 -0.01 16 35 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 39 H 0.06 1.07 7.59 -51.93 -0.39 0.68 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 43 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 44 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 45 H 0.12 1.64 7.45 -51.93 -0.39 1.26 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.95 357.63 -6.95 -37.90 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.88 Total: 5.31 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.34 Total: 2.70 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.26 Total: -52.75 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.95 -6.95 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977446122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.970 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds